Wall clock time and date at job start Tue Mar 31 2020 18:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00173 * 2 1 4 4 C 1.52997 * 109.47651 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.51312 * 60.10315 * 4 3 2 6 6 C 1.53290 * 109.56051 * 180.23254 * 4 3 2 7 7 N 1.47223 * 108.40745 * 172.25741 * 6 4 3 8 8 C 1.34778 * 121.03085 * 129.46571 * 7 6 4 9 9 O 1.21280 * 120.00077 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99743 * 180.02562 * 8 7 6 11 11 H 1.09003 * 109.46963 * 299.99277 * 10 8 7 12 12 C 1.50695 * 109.47755 * 59.99539 * 10 8 7 13 13 H 1.08006 * 119.99718 * 24.89004 * 12 10 8 14 14 C 1.37871 * 120.00194 * 204.89879 * 12 10 8 15 15 N 1.31513 * 120.00320 * 5.56659 * 14 12 10 16 16 Si 1.86807 * 119.99879 * 185.57116 * 14 12 10 17 17 H 1.48504 * 109.47135 * 89.99779 * 16 14 12 18 18 H 1.48500 * 109.46898 * 209.99475 * 16 14 12 19 19 H 1.48499 * 109.47252 * 329.99815 * 16 14 12 20 20 C 1.50702 * 109.46955 * 179.97438 * 10 8 7 21 21 C 1.38224 * 120.00083 * 293.15991 * 20 10 8 22 22 C 1.38237 * 120.00140 * 179.74293 * 21 20 10 23 23 C 1.38237 * 119.99868 * 0.53298 * 22 21 20 24 24 C 1.38237 * 119.99875 * 359.74353 * 23 22 21 25 25 C 1.38235 * 120.00007 * 359.97438 * 24 23 22 26 26 C 1.47154 * 117.98697 * 309.48098 * 7 6 4 27 27 C 1.53292 * 108.41451 * 50.52031 * 26 7 6 28 28 O 1.42964 * 109.22188 * 307.68102 * 27 26 7 29 29 H 1.08998 * 109.46752 * 299.99195 * 1 2 3 30 30 H 1.09003 * 109.47206 * 59.99901 * 1 2 3 31 31 H 1.09007 * 109.46827 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46680 * 60.00323 * 3 2 1 33 33 H 1.09002 * 109.47592 * 300.00443 * 3 2 1 34 34 H 1.09008 * 109.46901 * 299.90344 * 5 4 3 35 35 H 1.09002 * 109.46768 * 59.89646 * 5 4 3 36 36 H 1.08997 * 109.47506 * 179.90635 * 5 4 3 37 37 H 1.09005 * 109.68234 * 291.97802 * 6 4 3 38 38 H 1.09006 * 109.68413 * 52.48556 * 6 4 3 39 39 H 0.97002 * 120.00204 * 180.02562 * 15 14 12 40 40 H 1.07995 * 120.00172 * 0.02562 * 21 20 10 41 41 H 1.07997 * 120.00393 * 180.29548 * 22 21 20 42 42 H 1.07997 * 119.99926 * 179.76626 * 23 22 21 43 43 H 1.07998 * 119.99993 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00084 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.68110 * 290.78332 * 26 7 6 46 46 H 1.08999 * 109.68374 * 170.26688 * 26 7 6 47 47 H 1.08997 * 109.50910 * 67.60334 * 27 26 7 48 48 H 1.09001 * 109.51351 * 187.70406 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9877 0.4280 -1.2512 6 6 4.1610 2.5841 0.0052 7 7 5.6144 2.4429 0.1927 8 6 6.4845 3.0606 -0.6307 9 8 6.0738 3.7462 -1.5429 10 6 7.9676 2.8995 -0.4177 11 1 8.2347 3.2687 0.5725 12 6 8.3354 1.4422 -0.5265 13 1 7.7150 0.7701 -1.1009 14 6 9.4638 0.9668 0.1073 15 7 10.1583 1.7583 0.8952 16 14 10.0063 -0.8017 -0.1533 17 1 10.9313 -0.8700 -1.3130 18 1 10.7020 -1.2905 1.0642 19 1 8.8169 -1.6504 -0.4182 20 6 8.7138 3.6850 -1.4652 21 6 8.6461 3.3051 -2.7925 22 6 9.3263 4.0288 -3.7541 23 6 10.0829 5.1258 -3.3869 24 6 10.1552 5.5024 -2.0588 25 6 9.4704 4.7821 -1.0979 26 6 6.0890 1.6062 1.3064 27 6 5.3695 0.2544 1.2372 28 8 3.9588 0.4751 1.1660 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.5461 -0.5686 -1.2524 35 1 3.6645 0.9696 -2.1403 36 1 5.0744 0.3438 -1.2519 37 1 3.9601 3.0801 -0.9444 38 1 3.7404 3.1710 0.8218 39 1 10.9523 1.4239 1.3408 40 1 8.0583 2.4457 -3.0790 41 1 9.2696 3.7349 -4.7918 42 1 10.6173 5.6890 -4.1377 43 1 10.7467 6.3592 -1.7718 44 1 9.5265 5.0765 -0.0603 45 1 5.8629 2.0943 2.2544 46 1 7.1648 1.4545 1.2191 47 1 5.6983 -0.2880 0.3508 48 1 5.6031 -0.3284 2.1282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361592237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:30 Heat of formation + Delta-G solvation = -93.570747 kcal Electronic energy + Delta-G solvation = -30462.553543 eV Core-core repulsion = 26482.894099 eV Total energy + Delta-G solvation = -3979.659444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.18307 -38.75153 -37.74937 -37.13462 -34.22358 -33.70496 -32.76777 -31.09218 -29.93952 -28.59538 -27.89014 -27.38151 -26.22183 -25.05795 -23.71840 -22.79998 -21.59545 -20.85858 -19.52516 -18.33317 -16.95863 -16.72974 -16.46828 -16.11834 -15.89927 -15.50509 -15.20213 -15.17188 -14.53373 -14.43258 -14.17216 -14.00507 -13.85924 -13.68562 -12.94550 -12.78223 -12.69873 -12.44459 -12.37573 -12.13417 -11.80914 -11.69296 -11.63715 -11.53548 -11.30358 -11.16320 -11.03302 -10.99368 -10.87321 -10.43279 -10.29945 -10.07121 -10.00615 -9.75945 -9.57595 -9.49540 -8.82087 -8.60542 -7.95313 -7.89155 -7.62170 -6.35168 -4.39639 2.37582 2.39912 3.15721 3.23958 3.24686 3.41927 3.65400 3.82274 3.98968 4.21726 4.80168 4.91361 5.00221 5.02600 5.03851 5.21118 5.26226 5.37392 5.43510 5.53714 5.60149 5.64380 5.69838 5.71769 5.79418 5.82869 5.89611 5.92818 6.05677 6.10689 6.20066 6.25818 6.34292 6.48088 6.53921 6.57665 6.62293 6.83909 6.94770 7.07534 7.13299 7.18622 7.36762 7.43876 7.51943 7.55277 7.70502 7.93077 8.01176 8.17402 8.60458 9.10556 9.22642 10.72331 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.004325 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.938491 B = 6472.177764 C = 7771.897923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.080 3.920 4 C 0.109 3.891 5 C -0.171 4.171 6 C 0.091 3.909 7 N -0.608 5.608 8 C 0.533 3.467 9 O -0.564 6.564 10 C 0.054 3.946 11 H 0.085 0.915 12 C -0.515 4.515 13 H 0.063 0.937 14 C 0.077 3.923 15 N -0.872 5.872 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.270 1.270 20 C -0.009 4.009 21 C -0.083 4.083 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.133 4.133 25 C -0.115 4.115 26 C 0.063 3.937 27 C 0.047 3.953 28 O -0.370 6.370 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.269 0.731 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.056 0.944 46 H 0.147 0.853 47 H 0.063 0.937 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.770 -0.450 0.087 10.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.002 3.998 4 C 0.068 3.932 5 C -0.228 4.228 6 C -0.033 4.033 7 N -0.342 5.342 8 C 0.325 3.675 9 O -0.443 6.443 10 C 0.033 3.967 11 H 0.103 0.897 12 C -0.552 4.552 13 H 0.081 0.919 14 C -0.129 4.129 15 N -0.507 5.507 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.010 4.010 21 C -0.102 4.102 22 C -0.154 4.154 23 C -0.166 4.166 24 C -0.151 4.151 25 C -0.134 4.134 26 C -0.060 4.060 27 C -0.030 4.030 28 O -0.289 6.289 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.074 0.926 46 H 0.165 0.835 47 H 0.081 0.919 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.816 -0.300 -0.123 10.821 hybrid contribution 0.447 -0.667 -0.236 0.837 sum -10.369 -0.967 -0.359 10.420 Atomic orbital electron populations 1.22731 0.81557 1.02585 0.99719 1.87966 1.19012 1.27178 1.95308 1.22436 0.91431 0.85264 1.00644 1.21757 0.92074 0.92069 0.87279 1.22265 1.02926 1.01026 0.96571 1.21972 0.82659 0.95479 1.03186 1.47935 1.04263 1.50357 1.31616 1.21609 0.89967 0.76356 0.79609 1.90575 1.80605 1.40773 1.32313 1.18110 0.84986 0.97089 0.96502 0.89736 1.20601 1.10465 0.90962 1.33201 0.91876 1.24921 0.95943 0.98013 0.94013 1.69895 1.17055 1.36042 1.27685 0.86587 0.79356 0.84160 0.78126 1.20258 1.20878 1.19433 1.19979 0.94789 0.91876 0.94346 1.20809 0.98016 0.98553 0.92788 1.20950 0.99161 0.96712 0.98543 1.20795 1.01524 0.98492 0.95805 1.20895 1.00761 1.00009 0.93417 1.20971 0.98216 0.95551 0.98635 1.22845 1.04955 0.90046 0.88133 1.23005 0.80339 0.96979 1.02722 1.87968 1.23238 1.76312 1.41377 0.94202 0.94319 0.89773 0.92570 0.91910 0.91378 0.92048 0.91098 0.88679 0.91754 0.92154 0.87148 0.87648 0.87759 0.87605 0.87090 0.92611 0.83514 0.91915 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.07 9.93 -44.75 -0.44 -5.51 16 3 C 0.08 1.01 5.07 37.16 0.19 1.20 16 4 C 0.11 1.66 0.89 -90.47 -0.08 1.58 16 5 C -0.17 -2.69 7.94 37.16 0.30 -2.39 16 6 C 0.09 1.48 5.31 -3.50 -0.02 1.46 16 7 N -0.61 -11.46 2.54 -172.22 -0.44 -11.90 16 8 C 0.53 11.66 6.99 -10.98 -0.08 11.58 16 9 O -0.56 -13.45 14.93 5.56 0.08 -13.37 16 10 C 0.05 1.24 1.52 -94.08 -0.14 1.09 16 11 H 0.08 2.05 7.16 -51.93 -0.37 1.68 16 12 C -0.51 -12.04 5.04 -34.44 -0.17 -12.21 16 13 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 14 C 0.08 1.83 5.23 -17.82 -0.09 1.74 16 15 N -0.87 -21.75 12.92 55.43 0.72 -21.03 16 16 Si 0.89 19.08 29.54 -169.99 -5.02 14.06 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 C -0.01 -0.20 4.29 -104.62 -0.45 -0.65 16 21 C -0.08 -1.86 8.35 -39.59 -0.33 -2.19 16 22 C -0.14 -2.68 10.05 -39.58 -0.40 -3.07 16 23 C -0.15 -2.76 10.05 -39.58 -0.40 -3.16 16 24 C -0.13 -2.56 10.05 -39.58 -0.40 -2.96 16 25 C -0.12 -2.51 9.67 -39.58 -0.38 -2.89 16 26 C 0.06 1.11 6.15 -3.53 -0.02 1.09 16 27 C 0.05 0.76 6.60 37.31 0.25 1.00 16 28 O -0.37 -6.13 10.12 -44.75 -0.45 -6.58 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.05 7.69 -51.92 -0.40 0.65 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.26 6.11 -51.93 -0.32 0.95 16 37 H 0.09 1.60 7.08 -51.93 -0.37 1.23 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 40 H 0.11 2.49 7.87 -52.49 -0.41 2.07 16 41 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.11 2.32 7.96 -52.49 -0.42 1.91 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.15 2.95 4.42 -51.93 -0.23 2.72 16 47 H 0.06 1.09 6.25 -51.93 -0.32 0.76 16 48 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 383.61 15.07 5.78 5.78 Total: -1.00 -28.09 383.61 -8.36 -36.45 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.46 Total: 9.49 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -1.12 Total: -7.38 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.28 Total: -32.93 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.81 Total: -25.47 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.09 -8.36 -36.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361592237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.123 kcal (2) G-P(sol) polarization free energy of solvation -28.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds