Wall clock time and date at job start Tue Mar 31 2020 18:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00173 * 2 1 4 4 C 1.52997 * 109.47651 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.51312 * 60.10315 * 4 3 2 6 6 C 1.53290 * 109.56051 * 180.23254 * 4 3 2 7 7 N 1.47223 * 108.40745 * 172.25741 * 6 4 3 8 8 C 1.34778 * 121.03085 * 129.46571 * 7 6 4 9 9 O 1.21280 * 120.00077 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99743 * 180.02562 * 8 7 6 11 11 H 1.09003 * 109.46963 * 299.99277 * 10 8 7 12 12 C 1.50695 * 109.47755 * 59.99539 * 10 8 7 13 13 H 1.08006 * 119.99718 * 24.89004 * 12 10 8 14 14 C 1.37871 * 120.00194 * 204.89879 * 12 10 8 15 15 N 1.31513 * 120.00320 * 5.56659 * 14 12 10 16 16 Si 1.86807 * 119.99879 * 185.57116 * 14 12 10 17 17 H 1.48504 * 109.47135 * 89.99779 * 16 14 12 18 18 H 1.48500 * 109.46898 * 209.99475 * 16 14 12 19 19 H 1.48499 * 109.47252 * 329.99815 * 16 14 12 20 20 C 1.50702 * 109.46955 * 179.97438 * 10 8 7 21 21 C 1.38224 * 120.00083 * 293.15991 * 20 10 8 22 22 C 1.38237 * 120.00140 * 179.74293 * 21 20 10 23 23 C 1.38237 * 119.99868 * 0.53298 * 22 21 20 24 24 C 1.38237 * 119.99875 * 359.74353 * 23 22 21 25 25 C 1.38235 * 120.00007 * 359.97438 * 24 23 22 26 26 C 1.47154 * 117.98697 * 309.48098 * 7 6 4 27 27 C 1.53292 * 108.41451 * 50.52031 * 26 7 6 28 28 O 1.42964 * 109.22188 * 307.68102 * 27 26 7 29 29 H 1.08998 * 109.46752 * 299.99195 * 1 2 3 30 30 H 1.09003 * 109.47206 * 59.99901 * 1 2 3 31 31 H 1.09007 * 109.46827 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46680 * 60.00323 * 3 2 1 33 33 H 1.09002 * 109.47592 * 300.00443 * 3 2 1 34 34 H 1.09008 * 109.46901 * 299.90344 * 5 4 3 35 35 H 1.09002 * 109.46768 * 59.89646 * 5 4 3 36 36 H 1.08997 * 109.47506 * 179.90635 * 5 4 3 37 37 H 1.09005 * 109.68234 * 291.97802 * 6 4 3 38 38 H 1.09006 * 109.68413 * 52.48556 * 6 4 3 39 39 H 0.97002 * 120.00204 * 180.02562 * 15 14 12 40 40 H 1.07995 * 120.00172 * 0.02562 * 21 20 10 41 41 H 1.07997 * 120.00393 * 180.29548 * 22 21 20 42 42 H 1.07997 * 119.99926 * 179.76626 * 23 22 21 43 43 H 1.07998 * 119.99993 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00084 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.68110 * 290.78332 * 26 7 6 46 46 H 1.08999 * 109.68374 * 170.26688 * 26 7 6 47 47 H 1.08997 * 109.50910 * 67.60334 * 27 26 7 48 48 H 1.09001 * 109.51351 * 187.70406 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9877 0.4280 -1.2512 6 6 4.1610 2.5841 0.0052 7 7 5.6144 2.4429 0.1927 8 6 6.4845 3.0606 -0.6307 9 8 6.0738 3.7462 -1.5429 10 6 7.9676 2.8995 -0.4177 11 1 8.2347 3.2687 0.5725 12 6 8.3354 1.4422 -0.5265 13 1 7.7150 0.7701 -1.1009 14 6 9.4638 0.9668 0.1073 15 7 10.1583 1.7583 0.8952 16 14 10.0063 -0.8017 -0.1533 17 1 10.9313 -0.8700 -1.3130 18 1 10.7020 -1.2905 1.0642 19 1 8.8169 -1.6504 -0.4182 20 6 8.7138 3.6850 -1.4652 21 6 8.6461 3.3051 -2.7925 22 6 9.3263 4.0288 -3.7541 23 6 10.0829 5.1258 -3.3869 24 6 10.1552 5.5024 -2.0588 25 6 9.4704 4.7821 -1.0979 26 6 6.0890 1.6062 1.3064 27 6 5.3695 0.2544 1.2372 28 8 3.9588 0.4751 1.1660 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.5461 -0.5686 -1.2524 35 1 3.6645 0.9696 -2.1403 36 1 5.0744 0.3438 -1.2519 37 1 3.9601 3.0801 -0.9444 38 1 3.7404 3.1710 0.8218 39 1 10.9523 1.4239 1.3408 40 1 8.0583 2.4457 -3.0790 41 1 9.2696 3.7349 -4.7918 42 1 10.6173 5.6890 -4.1377 43 1 10.7467 6.3592 -1.7718 44 1 9.5265 5.0765 -0.0603 45 1 5.8629 2.0943 2.2544 46 1 7.1648 1.4545 1.2191 47 1 5.6983 -0.2880 0.3508 48 1 5.6031 -0.3284 2.1282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361592237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:29 Heat of formation + Delta-G solvation = -108.507109 kcal Electronic energy + Delta-G solvation = -30463.201233 eV Core-core repulsion = 26482.894099 eV Total energy + Delta-G solvation = -3980.307133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.64377 -40.24597 -39.14872 -38.34385 -35.90199 -35.29169 -34.07814 -32.81748 -31.53198 -29.97594 -29.48420 -28.38569 -27.55788 -26.25613 -25.38614 -24.17651 -23.19868 -22.40438 -20.92105 -19.86038 -18.72708 -18.01366 -17.91506 -17.44981 -17.20687 -16.86058 -16.59236 -16.30947 -16.16225 -15.97204 -15.62156 -15.41292 -15.29390 -15.04249 -14.43676 -14.36072 -14.03243 -14.00242 -13.86287 -13.43053 -13.29758 -13.12303 -13.01065 -12.96519 -12.77945 -12.68407 -12.48195 -12.36465 -12.19073 -11.98018 -11.94379 -11.65332 -11.41869 -11.26329 -11.00684 -10.66485 -10.58954 -10.36459 -9.55640 -9.40037 -9.25428 -8.20341 -6.27853 0.76223 0.80527 1.41627 1.46533 1.52572 1.84682 2.10857 2.42031 2.69090 2.84768 3.09159 3.24667 3.72344 3.79929 3.90966 4.05451 4.18292 4.24962 4.29728 4.30178 4.39152 4.41481 4.45361 4.50895 4.52588 4.58760 4.61605 4.63190 4.66150 4.76597 4.87347 4.88730 4.90740 4.96843 5.00007 5.09332 5.14715 5.22957 5.36123 5.44452 5.63560 5.69706 5.78811 5.83391 5.93724 6.15573 6.23790 6.28987 6.38841 6.53214 6.72801 7.34312 7.41551 8.87249 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.004325 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.938491 B = 6472.177764 C = 7771.897923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.083 3.917 4 C 0.108 3.892 5 C -0.163 4.163 6 C 0.090 3.910 7 N -0.605 5.605 8 C 0.530 3.470 9 O -0.589 6.589 10 C 0.059 3.941 11 H 0.063 0.937 12 C -0.505 4.505 13 H 0.051 0.949 14 C 0.045 3.955 15 N -0.897 5.897 16 Si 0.938 3.062 17 H -0.286 1.286 18 H -0.278 1.278 19 H -0.264 1.264 20 C -0.035 4.035 21 C -0.109 4.109 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.131 4.131 25 C -0.139 4.139 26 C 0.064 3.936 27 C 0.053 3.947 28 O -0.373 6.373 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.268 0.732 40 H 0.094 0.906 41 H 0.134 0.866 42 H 0.146 0.854 43 H 0.139 0.861 44 H 0.106 0.894 45 H 0.071 0.929 46 H 0.123 0.877 47 H 0.048 0.952 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.601 -0.247 -0.401 11.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C 0.006 3.994 4 C 0.068 3.932 5 C -0.220 4.220 6 C -0.033 4.033 7 N -0.338 5.338 8 C 0.322 3.678 9 O -0.470 6.470 10 C 0.038 3.962 11 H 0.081 0.919 12 C -0.543 4.543 13 H 0.070 0.930 14 C -0.158 4.158 15 N -0.533 5.533 16 Si 0.764 3.236 17 H -0.212 1.212 18 H -0.203 1.203 19 H -0.188 1.188 20 C -0.036 4.036 21 C -0.127 4.127 22 C -0.155 4.155 23 C -0.161 4.161 24 C -0.149 4.149 25 C -0.158 4.158 26 C -0.058 4.058 27 C -0.024 4.024 28 O -0.292 6.292 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.152 0.848 42 H 0.163 0.837 43 H 0.156 0.844 44 H 0.124 0.876 45 H 0.089 0.911 46 H 0.140 0.860 47 H 0.066 0.934 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.681 -0.119 -0.589 11.696 hybrid contribution 0.653 -0.687 -0.113 0.955 sum -11.027 -0.806 -0.703 11.079 Atomic orbital electron populations 1.22938 0.79437 1.03776 1.00929 1.87914 1.21337 1.27440 1.95570 1.22411 0.89207 0.85569 1.02212 1.21858 0.94058 0.90819 0.86485 1.22183 1.01023 1.01451 0.97392 1.22150 0.80872 0.96672 1.03624 1.47937 1.05352 1.49445 1.31021 1.21435 0.90042 0.76561 0.79810 1.90539 1.80903 1.42115 1.33477 1.17971 0.85949 0.96770 0.95533 0.91927 1.20535 1.10169 0.91175 1.32432 0.93034 1.25388 0.95973 1.00532 0.93891 1.69980 1.17442 1.37240 1.28649 0.85847 0.78872 0.81222 0.77638 1.21226 1.20331 1.18773 1.20095 0.95790 0.92968 0.94766 1.20835 0.99432 0.99151 0.93316 1.21318 0.98220 0.96530 0.99420 1.21258 1.00590 0.97891 0.96394 1.21294 0.99901 1.00288 0.93376 1.21123 0.99267 0.96121 0.99259 1.22801 1.03734 0.90991 0.88254 1.22963 0.80331 0.95973 1.03162 1.87974 1.22910 1.76381 1.41933 0.93118 0.92929 0.88707 0.91274 0.90043 0.91145 0.91458 0.93802 0.89278 0.89840 0.92284 0.88727 0.84818 0.83672 0.84366 0.87572 0.91098 0.85958 0.93362 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.40 -10.05 9.93 -139.88 -1.39 -11.44 16 3 C 0.08 1.94 5.07 71.98 0.36 2.30 16 4 C 0.11 3.19 0.89 -10.70 -0.01 3.18 16 5 C -0.16 -5.13 7.94 71.98 0.57 -4.56 16 6 C 0.09 2.88 5.31 86.34 0.46 3.33 16 7 N -0.60 -23.23 2.54 -817.16 -2.07 -25.31 16 8 C 0.53 24.06 6.99 87.66 0.61 24.67 16 9 O -0.59 -29.00 14.93 -3.03 -0.05 -29.05 16 10 C 0.06 2.82 1.52 -13.03 -0.02 2.80 16 11 H 0.06 3.22 7.16 -2.39 -0.02 3.20 16 12 C -0.51 -24.57 5.04 25.60 0.13 -24.44 16 13 H 0.05 2.58 7.81 -2.91 -0.02 2.55 16 14 C 0.05 2.21 5.23 84.65 0.44 2.65 16 15 N -0.90 -45.97 12.92 21.44 0.28 -45.69 16 16 Si 0.94 39.71 29.54 68.60 2.03 41.74 16 17 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 20 C -0.04 -1.67 4.29 -19.87 -0.09 -1.76 16 21 C -0.11 -4.96 8.35 22.27 0.19 -4.77 16 22 C -0.14 -5.23 10.05 22.27 0.22 -5.00 16 23 C -0.14 -4.97 10.05 22.27 0.22 -4.74 16 24 C -0.13 -4.83 10.05 22.27 0.22 -4.61 16 25 C -0.14 -6.14 9.67 22.27 0.22 -5.93 16 26 C 0.06 2.31 6.15 86.35 0.53 2.84 16 27 C 0.05 1.70 6.60 72.08 0.48 2.18 16 28 O -0.37 -11.93 10.12 -139.88 -1.42 -13.34 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 2.15 7.69 -2.38 -0.02 2.13 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 1.60 6.11 -2.39 -0.01 1.59 16 37 H 0.09 2.98 7.08 -2.38 -0.02 2.97 16 38 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 40 H 0.09 4.46 7.87 -2.91 -0.02 4.44 16 41 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 42 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 43 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 44 H 0.11 4.62 7.96 -2.91 -0.02 4.59 16 45 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.12 5.10 4.42 -2.39 -0.01 5.09 16 47 H 0.05 1.70 6.25 -2.39 -0.01 1.69 16 48 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -61.68 383.61 4.11 -57.56 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: 0.94 Total: 35.73 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 5.79 Total: -10.20 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -1.80 Total: -71.00 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -2.85 Total: -53.83 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -61.68 4.11 -57.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361592237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.944 kcal (2) G-P(sol) polarization free energy of solvation -61.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds