Wall clock time and date at job start Tue Mar 31 2020 17:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38045 * 126.28875 * 2 1 4 4 C 1.47429 * 126.41738 * 359.71595 * 3 2 1 5 5 O 1.21602 * 119.99684 * 322.88749 * 4 3 2 6 6 N 1.34769 * 119.99874 * 142.88312 * 4 3 2 7 7 C 1.46501 * 120.00304 * 4.69644 * 6 4 3 8 8 C 1.46503 * 120.00070 * 184.70010 * 6 4 3 9 9 C 1.53001 * 109.47279 * 89.99866 * 8 6 4 10 10 H 1.09006 * 109.47114 * 55.00174 * 9 8 6 11 11 C 1.53000 * 109.46880 * 295.00334 * 9 8 6 12 12 C 1.50693 * 109.47226 * 175.00219 * 9 8 6 13 13 N 1.33317 * 126.55045 * 60.02652 * 12 9 8 14 14 N 1.28999 * 107.35803 * 180.02562 * 13 12 9 15 15 N 1.28784 * 108.72294 * 359.97438 * 14 13 12 16 16 H 0.96999 * 125.44674 * 179.97438 * 15 14 13 17 17 N 1.28882 * 109.10080 * 359.72799 * 15 14 13 18 18 C 1.41293 * 107.16890 * 179.73594 * 3 2 1 19 19 N 1.30451 * 108.02228 * 0.02562 * 18 3 2 20 20 N 1.34261 * 126.29168 * 179.69429 * 2 1 3 21 21 C 1.46493 * 125.75423 * 0.23370 * 20 2 1 22 22 C 1.50700 * 109.46967 * 90.00363 * 21 20 2 23 23 H 1.07997 * 119.99858 * 0.02562 * 22 21 20 24 24 C 1.37884 * 120.00024 * 179.97438 * 22 21 20 25 25 N 1.31505 * 119.99946 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99799 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46852 * 60.00461 * 26 24 22 28 28 H 1.48493 * 109.46776 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47237 * 300.00572 * 26 24 22 30 30 H 1.08998 * 109.47598 * 90.02659 * 1 2 3 31 31 H 1.09006 * 109.47220 * 210.02142 * 1 2 3 32 32 H 1.09000 * 109.47224 * 330.01799 * 1 2 3 33 33 H 1.09001 * 109.46779 * 84.80301 * 7 6 4 34 34 H 1.09000 * 109.47689 * 204.80200 * 7 6 4 35 35 H 1.09002 * 109.47265 * 324.80676 * 7 6 4 36 36 H 1.08997 * 109.47385 * 209.99758 * 8 6 4 37 37 H 1.08998 * 109.46796 * 329.99935 * 8 6 4 38 38 H 1.09001 * 109.47349 * 299.99422 * 11 9 8 39 39 H 1.08996 * 109.47270 * 60.00252 * 11 9 8 40 40 H 1.08999 * 109.47023 * 179.97438 * 11 9 8 41 41 H 1.08004 * 125.98662 * 179.97438 * 18 3 2 42 42 H 1.09005 * 109.47313 * 210.00548 * 21 20 2 43 43 H 1.08997 * 109.47542 * 330.00830 * 21 20 2 44 44 H 0.97007 * 120.00183 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 -0.0059 5 8 0.9057 2.8493 -0.6462 6 7 2.5712 3.4424 0.6985 7 6 3.8093 3.0675 1.3860 8 6 2.0783 4.8198 0.7767 9 6 1.1490 4.9612 1.9839 10 1 1.6701 4.6343 2.8838 11 6 -0.0959 4.0970 1.7732 12 6 0.7394 6.4033 2.1364 13 7 0.0831 7.1412 1.2409 14 7 -0.0731 8.3160 1.7504 15 7 0.4594 8.3322 2.9229 16 1 0.4805 9.0959 3.5206 17 7 0.9550 7.1700 3.1771 18 6 3.6590 0.6499 0.0062 19 7 3.6340 -0.6543 0.0091 20 7 2.3016 -1.0821 0.0058 21 6 1.8501 -2.4757 0.0084 22 6 1.7000 -2.9578 -1.4116 23 1 1.9195 -2.2926 -2.2336 24 6 1.2835 -4.2483 -1.6612 25 7 1.0167 -5.0583 -0.6601 26 14 1.0982 -4.8459 -3.4213 27 1 2.4068 -4.7505 -4.1168 28 1 0.6403 -6.2585 -3.4187 29 1 0.0997 -4.0036 -4.1275 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3634 -0.8898 0.5142 32 1 -0.3634 0.8901 0.5135 33 1 4.6447 3.1271 0.6883 34 1 3.9828 3.7483 2.2194 35 1 3.7219 2.0481 1.7618 36 1 2.9214 5.5019 0.8854 37 1 1.5303 5.0618 -0.1339 38 1 -0.6170 4.4238 0.8733 39 1 0.2004 3.0539 1.6629 40 1 -0.7577 4.1973 2.6334 41 1 4.5448 1.2678 0.0074 42 1 2.5830 -3.0942 0.5265 43 1 0.8897 -2.5456 0.5191 44 1 0.7233 -5.9661 -0.8357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362618929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:52 Heat of formation + Delta-G solvation = 160.011849 kcal Electronic energy + Delta-G solvation = -28451.071738 eV Core-core repulsion = 24443.453619 eV Total energy + Delta-G solvation = -4007.618119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.75654 -40.88469 -39.29726 -36.40965 -34.83275 -34.18946 -33.78655 -32.18553 -31.85819 -31.04397 -28.01518 -27.03444 -26.77851 -26.06235 -24.83106 -24.36118 -23.34536 -21.71331 -20.85625 -19.75864 -19.07547 -18.40448 -17.35929 -16.91810 -16.74072 -16.37200 -15.75821 -15.26133 -14.84828 -14.59503 -14.37221 -14.00714 -13.88335 -13.68205 -13.21078 -13.01394 -12.84715 -12.55118 -12.46794 -12.28550 -12.18619 -12.08083 -11.86843 -11.67022 -11.63023 -11.48437 -11.47953 -11.35605 -11.09760 -11.04406 -10.85996 -10.59475 -10.34335 -10.23233 -9.92329 -9.39676 -8.68915 -8.63978 -8.52442 -7.86779 -6.31929 -4.39510 0.84213 1.81308 2.00255 2.26974 2.82884 2.98881 3.22371 3.25936 3.29065 3.41712 3.68073 3.70550 4.02060 4.26398 4.69443 4.77106 4.94482 5.00811 5.06829 5.16635 5.20727 5.26863 5.36540 5.37916 5.52708 5.57026 5.67283 5.75464 5.76178 5.80110 5.94957 5.97595 6.06452 6.11758 6.29747 6.41839 6.47266 6.59746 6.82124 6.91400 7.18335 7.54829 7.58343 7.79013 7.81191 7.95589 8.40250 8.54675 8.66264 9.27432 10.76130 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.026506 B = 0.002376 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.101926 B =11783.286291 C =12183.032105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.156 3.844 3 C -0.328 4.328 4 C 0.605 3.395 5 O -0.538 6.538 6 N -0.618 5.618 7 C 0.077 3.923 8 C 0.129 3.871 9 C -0.009 4.009 10 H 0.100 0.900 11 C -0.137 4.137 12 C 0.187 3.813 13 N -0.266 5.266 14 N -0.054 5.054 15 N -0.234 5.234 16 H 0.473 0.527 17 N -0.302 5.302 18 C 0.054 3.946 19 N -0.297 5.297 20 N -0.313 5.313 21 C 0.252 3.748 22 C -0.540 4.540 23 H 0.065 0.935 24 C 0.068 3.932 25 N -0.891 5.891 26 Si 0.908 3.092 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.178 0.822 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 22.905 10.210 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.020 3.980 3 C -0.344 4.344 4 C 0.396 3.604 5 O -0.414 6.414 6 N -0.352 5.352 7 C -0.066 4.066 8 C 0.005 3.995 9 C -0.033 4.033 10 H 0.118 0.882 11 C -0.196 4.196 12 C -0.096 4.096 13 N -0.139 5.139 14 N -0.050 5.050 15 N -0.080 5.080 16 H 0.327 0.673 17 N -0.154 5.154 18 C -0.132 4.132 19 N -0.117 5.117 20 N -0.090 5.090 21 C 0.135 3.865 22 C -0.578 4.578 23 H 0.083 0.917 24 C -0.136 4.136 25 N -0.528 5.528 26 Si 0.734 3.266 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.198 1.198 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.195 0.805 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.352 22.130 9.718 24.208 hybrid contribution -0.118 0.451 -0.235 0.522 sum 1.234 22.582 9.483 24.523 Atomic orbital electron populations 1.20438 0.87076 1.02888 1.04110 1.21341 0.94697 0.86561 0.95450 1.19609 0.93368 0.92325 1.29083 1.17414 0.81721 0.83987 0.77293 1.90750 1.27349 1.81074 1.42270 1.47566 1.25801 1.09238 1.52568 1.22002 0.85616 1.02382 0.96638 1.21310 0.97069 0.82931 0.98239 1.20028 0.98678 0.83261 1.01287 0.88201 1.21815 0.95405 0.99941 1.02408 1.25630 0.98066 0.99407 0.86520 1.75937 1.15906 0.96700 1.25317 1.79004 1.14271 1.16542 0.95145 1.47805 1.35649 1.11034 1.13501 0.67342 1.74732 1.20909 0.93320 1.26402 1.23901 0.96370 0.92418 1.00519 1.77150 0.98557 1.12263 1.23716 1.49317 1.02457 1.08194 1.49062 1.19824 0.96318 0.70972 0.99385 1.21222 1.47421 0.98098 0.91063 0.91685 1.24915 0.94443 0.96006 0.98264 1.69899 1.44497 1.07278 1.31125 0.86385 0.78918 0.77718 0.83551 1.19899 1.20911 1.19810 0.89439 0.90720 0.90384 0.92617 0.91496 0.89951 0.90727 0.88386 0.90678 0.90843 0.93076 0.80519 0.92570 0.92648 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.50 9.54 36.00 0.34 -1.15 16 2 C 0.16 3.06 7.00 -81.60 -0.57 2.49 16 3 C -0.33 -5.77 5.37 -105.06 -0.56 -6.34 16 4 C 0.60 9.54 5.77 -12.52 -0.07 9.46 16 5 O -0.54 -9.79 14.42 5.28 0.08 -9.71 16 6 N -0.62 -7.31 2.76 -182.85 -0.50 -7.81 16 7 C 0.08 0.69 9.03 59.85 0.54 1.23 16 8 C 0.13 1.36 4.96 -4.04 -0.02 1.34 16 9 C -0.01 -0.09 3.06 -91.77 -0.28 -0.38 16 10 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 11 C -0.14 -1.58 8.01 37.16 0.30 -1.28 16 12 C 0.19 1.95 6.88 -156.63 -1.08 0.87 16 13 N -0.27 -3.13 12.50 32.44 0.41 -2.73 16 14 N -0.05 -0.53 13.48 60.35 0.81 0.28 16 15 N -0.23 -1.59 7.91 60.34 0.48 -1.11 16 16 H 0.47 0.91 8.96 -340.53 -3.05 -2.14 16 17 N -0.30 -2.72 12.36 32.46 0.40 -2.32 16 18 C 0.05 0.92 9.72 -16.98 -0.16 0.75 16 19 N -0.30 -6.23 12.50 30.86 0.39 -5.85 16 20 N -0.31 -6.91 3.56 -57.78 -0.21 -7.12 16 21 C 0.25 6.18 5.97 -5.20 -0.03 6.15 16 22 C -0.54 -14.50 9.39 -34.44 -0.32 -14.82 16 23 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 24 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 25 N -0.89 -24.49 13.29 55.43 0.74 -23.76 16 26 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 30 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.07 1.25 7.05 -51.93 -0.37 0.88 16 32 H 0.08 1.20 7.64 -51.93 -0.40 0.80 16 33 H 0.06 0.44 7.32 -51.93 -0.38 0.06 16 34 H 0.07 0.44 8.03 -51.93 -0.42 0.02 16 35 H 0.08 0.84 5.86 -51.93 -0.30 0.53 16 36 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 37 H 0.10 1.24 7.36 -51.93 -0.38 0.86 16 38 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 39 H 0.07 0.94 6.15 -51.93 -0.32 0.62 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.18 2.26 6.28 -52.48 -0.33 1.93 16 42 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.06 1.34 7.01 -51.93 -0.36 0.98 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -32.95 370.29 -7.26 -40.21 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -8.39 Total: -1.59 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.02 Total: 0.04 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 2.51 Total: -50.40 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.95 -7.26 -40.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362618929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.226 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds