Wall clock time and date at job start Tue Mar 31 2020 17:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38045 * 126.28875 * 2 1 4 4 C 1.47429 * 126.41738 * 359.71595 * 3 2 1 5 5 O 1.21602 * 119.99684 * 322.88749 * 4 3 2 6 6 N 1.34769 * 119.99874 * 142.88312 * 4 3 2 7 7 C 1.46501 * 120.00304 * 4.69644 * 6 4 3 8 8 C 1.46503 * 120.00070 * 184.70010 * 6 4 3 9 9 C 1.53001 * 109.47279 * 89.99866 * 8 6 4 10 10 H 1.09006 * 109.47114 * 55.00174 * 9 8 6 11 11 C 1.53000 * 109.46880 * 295.00334 * 9 8 6 12 12 C 1.50693 * 109.47226 * 175.00219 * 9 8 6 13 13 N 1.33317 * 126.55045 * 60.02652 * 12 9 8 14 14 N 1.28999 * 107.35803 * 180.02562 * 13 12 9 15 15 N 1.28784 * 108.72294 * 359.97438 * 14 13 12 16 16 H 0.96999 * 125.44674 * 179.97438 * 15 14 13 17 17 N 1.28882 * 109.10080 * 359.72799 * 15 14 13 18 18 C 1.41293 * 107.16890 * 179.73594 * 3 2 1 19 19 N 1.30451 * 108.02228 * 0.02562 * 18 3 2 20 20 N 1.34261 * 126.29168 * 179.69429 * 2 1 3 21 21 C 1.46493 * 125.75423 * 0.23370 * 20 2 1 22 22 C 1.50700 * 109.46967 * 90.00363 * 21 20 2 23 23 H 1.07997 * 119.99858 * 0.02562 * 22 21 20 24 24 C 1.37884 * 120.00024 * 179.97438 * 22 21 20 25 25 N 1.31505 * 119.99946 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99799 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46852 * 60.00461 * 26 24 22 28 28 H 1.48493 * 109.46776 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47237 * 300.00572 * 26 24 22 30 30 H 1.08998 * 109.47598 * 90.02659 * 1 2 3 31 31 H 1.09006 * 109.47220 * 210.02142 * 1 2 3 32 32 H 1.09000 * 109.47224 * 330.01799 * 1 2 3 33 33 H 1.09001 * 109.46779 * 84.80301 * 7 6 4 34 34 H 1.09000 * 109.47689 * 204.80200 * 7 6 4 35 35 H 1.09002 * 109.47265 * 324.80676 * 7 6 4 36 36 H 1.08997 * 109.47385 * 209.99758 * 8 6 4 37 37 H 1.08998 * 109.46796 * 329.99935 * 8 6 4 38 38 H 1.09001 * 109.47349 * 299.99422 * 11 9 8 39 39 H 1.08996 * 109.47270 * 60.00252 * 11 9 8 40 40 H 1.08999 * 109.47023 * 179.97438 * 11 9 8 41 41 H 1.08004 * 125.98662 * 179.97438 * 18 3 2 42 42 H 1.09005 * 109.47313 * 210.00548 * 21 20 2 43 43 H 1.08997 * 109.47542 * 330.00830 * 21 20 2 44 44 H 0.97007 * 120.00183 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 -0.0059 5 8 0.9057 2.8493 -0.6462 6 7 2.5712 3.4424 0.6985 7 6 3.8093 3.0675 1.3860 8 6 2.0783 4.8198 0.7767 9 6 1.1490 4.9612 1.9839 10 1 1.6701 4.6343 2.8838 11 6 -0.0959 4.0970 1.7732 12 6 0.7394 6.4033 2.1364 13 7 0.0831 7.1412 1.2409 14 7 -0.0731 8.3160 1.7504 15 7 0.4594 8.3322 2.9229 16 1 0.4805 9.0959 3.5206 17 7 0.9550 7.1700 3.1771 18 6 3.6590 0.6499 0.0062 19 7 3.6340 -0.6543 0.0091 20 7 2.3016 -1.0821 0.0058 21 6 1.8501 -2.4757 0.0084 22 6 1.7000 -2.9578 -1.4116 23 1 1.9195 -2.2926 -2.2336 24 6 1.2835 -4.2483 -1.6612 25 7 1.0167 -5.0583 -0.6601 26 14 1.0982 -4.8459 -3.4213 27 1 2.4068 -4.7505 -4.1168 28 1 0.6403 -6.2585 -3.4187 29 1 0.0997 -4.0036 -4.1275 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3634 -0.8898 0.5142 32 1 -0.3634 0.8901 0.5135 33 1 4.6447 3.1271 0.6883 34 1 3.9828 3.7483 2.2194 35 1 3.7219 2.0481 1.7618 36 1 2.9214 5.5019 0.8854 37 1 1.5303 5.0618 -0.1339 38 1 -0.6170 4.4238 0.8733 39 1 0.2004 3.0539 1.6629 40 1 -0.7577 4.1973 2.6334 41 1 4.5448 1.2678 0.0074 42 1 2.5830 -3.0942 0.5265 43 1 0.8897 -2.5456 0.5191 44 1 0.7233 -5.9661 -0.8357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362618929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:51 Heat of formation + Delta-G solvation = 136.816222 kcal Electronic energy + Delta-G solvation = -28452.077575 eV Core-core repulsion = 24443.453619 eV Total energy + Delta-G solvation = -4008.623957 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.47140 -42.32874 -40.47411 -37.41356 -35.93731 -35.54264 -34.90681 -33.78925 -32.91421 -32.42046 -29.45673 -28.34476 -28.03985 -27.10085 -25.56760 -25.50629 -24.94042 -22.87707 -21.88447 -21.08620 -19.90355 -19.62701 -18.82664 -18.15792 -18.05844 -17.32259 -17.03736 -16.65482 -16.31742 -15.85532 -15.74653 -15.09365 -15.01623 -14.69171 -14.47862 -14.24914 -14.11169 -13.86591 -13.64491 -13.57601 -13.43698 -13.30919 -13.15114 -12.91482 -12.80734 -12.72291 -12.67423 -12.44176 -12.27768 -12.25059 -12.13764 -11.87140 -11.83796 -11.71832 -11.33957 -10.74299 -10.71305 -10.19425 -9.61132 -9.33967 -8.35988 -6.51790 0.14814 0.80671 1.02975 1.37727 1.39468 1.43232 1.48269 1.50241 1.72820 2.09969 2.33994 2.43134 2.89263 2.96101 3.27978 3.73306 3.78615 3.93382 3.97273 4.14056 4.18199 4.25792 4.43441 4.50899 4.53459 4.59811 4.61621 4.68141 4.73116 4.84064 4.88224 4.89402 4.95566 5.02127 5.06673 5.11491 5.21399 5.37934 5.51300 5.64022 5.68190 5.76659 5.78085 6.10645 6.47236 6.57480 6.90556 7.19021 7.23260 7.35458 8.71282 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.026506 B = 0.002376 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.101926 B =11783.286291 C =12183.032105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.138 3.862 3 C -0.323 4.323 4 C 0.606 3.394 5 O -0.568 6.568 6 N -0.606 5.606 7 C 0.068 3.932 8 C 0.132 3.868 9 C -0.002 4.002 10 H 0.120 0.880 11 C -0.131 4.131 12 C 0.180 3.820 13 N -0.299 5.299 14 N -0.064 5.064 15 N -0.205 5.205 16 H 0.492 0.508 17 N -0.298 5.298 18 C 0.076 3.924 19 N -0.337 5.337 20 N -0.338 5.338 21 C 0.269 3.731 22 C -0.556 4.556 23 H 0.049 0.951 24 C 0.025 3.975 25 N -0.915 5.915 26 Si 0.968 3.032 27 H -0.274 1.274 28 H -0.272 1.272 29 H -0.268 1.268 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.222 0.778 42 H 0.032 0.968 43 H 0.051 0.949 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 25.072 10.930 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.003 3.997 3 C -0.339 4.339 4 C 0.396 3.604 5 O -0.448 6.448 6 N -0.338 5.338 7 C -0.074 4.074 8 C 0.008 3.992 9 C -0.024 4.024 10 H 0.138 0.862 11 C -0.190 4.190 12 C -0.103 4.103 13 N -0.171 5.171 14 N -0.059 5.059 15 N -0.056 5.056 16 H 0.351 0.649 17 N -0.150 5.150 18 C -0.110 4.110 19 N -0.157 5.157 20 N -0.116 5.116 21 C 0.150 3.850 22 C -0.594 4.594 23 H 0.067 0.933 24 C -0.176 4.176 25 N -0.553 5.553 26 Si 0.792 3.208 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.193 1.193 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.238 0.762 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.470 24.351 10.472 26.622 hybrid contribution -0.413 -0.021 -0.344 0.538 sum 2.056 24.330 10.128 26.434 Atomic orbital electron populations 1.20431 0.86089 1.03643 1.03767 1.21826 0.95680 0.86672 0.95557 1.19894 0.93371 0.92997 1.27606 1.17200 0.81724 0.83769 0.77753 1.90745 1.28737 1.81379 1.43907 1.47533 1.26026 1.09025 1.51200 1.22266 0.84525 1.02627 0.98006 1.21370 0.98015 0.82306 0.97540 1.19926 0.97766 0.83025 1.01721 0.86212 1.21702 0.96302 0.99250 1.01712 1.25586 0.98474 0.99557 0.86706 1.75935 1.17117 0.97516 1.26556 1.78956 1.14838 1.16072 0.96038 1.47870 1.33625 1.11151 1.12948 0.64930 1.74702 1.20820 0.93703 1.25777 1.24582 0.97567 0.91366 0.97453 1.77099 0.98324 1.14372 1.25913 1.49034 1.03346 1.07630 1.51559 1.19323 0.95302 0.72486 0.97864 1.21372 1.47862 0.98391 0.91746 0.93289 1.25684 0.93898 0.95995 1.02065 1.69976 1.44814 1.07650 1.32892 0.85457 0.78777 0.77691 0.78917 1.19919 1.19685 1.19325 0.90246 0.90837 0.88670 0.90675 0.88173 0.91113 0.87814 0.90753 0.92849 0.92334 0.92259 0.76197 0.95015 0.93085 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.88 9.54 71.23 0.68 -2.20 16 2 C 0.14 5.49 7.00 42.14 0.29 5.79 16 3 C -0.32 -11.15 5.37 -20.15 -0.11 -11.26 16 4 C 0.61 18.46 5.77 86.67 0.50 18.96 16 5 O -0.57 -20.70 14.42 -4.04 -0.06 -20.76 16 6 N -0.61 -12.84 2.76 -850.67 -2.35 -15.19 16 7 C 0.07 0.95 9.03 127.77 1.15 2.10 16 8 C 0.13 2.48 4.96 86.38 0.43 2.91 16 9 C 0.00 -0.03 3.06 -11.54 -0.04 -0.07 16 10 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 11 C -0.13 -2.94 8.01 71.98 0.58 -2.36 16 12 C 0.18 3.39 6.88 138.55 0.95 4.35 16 13 N -0.30 -6.71 12.50 -51.27 -0.64 -7.35 16 14 N -0.06 -1.15 13.48 37.02 0.50 -0.65 16 15 N -0.21 -2.27 7.91 37.00 0.29 -1.98 16 16 H 0.49 0.51 8.96 -347.67 -3.12 -2.60 16 17 N -0.30 -4.53 12.36 -51.20 -0.63 -5.17 16 18 C 0.08 2.49 9.72 85.65 0.83 3.32 16 19 N -0.34 -14.23 12.50 -56.27 -0.70 -14.93 16 20 N -0.34 -15.35 3.56 -336.71 -1.20 -16.55 16 21 C 0.27 13.75 5.97 85.63 0.51 14.26 16 22 C -0.56 -30.74 9.39 25.60 0.24 -30.50 16 23 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 24 C 0.03 1.36 5.46 84.66 0.46 1.82 16 25 N -0.92 -51.11 13.29 21.45 0.28 -50.83 16 26 Si 0.97 43.05 29.54 68.60 2.03 45.07 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 28 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 29 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 30 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.07 2.57 7.05 -2.38 -0.02 2.55 16 32 H 0.09 2.97 7.64 -2.39 -0.02 2.96 16 33 H 0.07 0.82 7.32 -2.39 -0.02 0.80 16 34 H 0.10 0.81 8.03 -2.39 -0.02 0.79 16 35 H 0.07 1.21 5.86 -2.39 -0.01 1.20 16 36 H 0.10 1.39 8.07 -2.39 -0.02 1.37 16 37 H 0.07 1.82 7.36 -2.39 -0.02 1.80 16 38 H 0.05 1.42 8.08 -2.39 -0.02 1.40 16 39 H 0.06 1.48 6.15 -2.39 -0.01 1.46 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.22 4.90 6.28 -2.91 -0.02 4.88 16 42 H 0.03 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.05 2.60 7.01 -2.39 -0.02 2.58 16 44 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 Total: -1.00 -73.35 370.29 1.95 -71.40 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -2.06 Total: 9.81 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 6.49 Total: 7.12 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -4.45 Total: -112.64 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.06 Total: -20.76 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -73.35 1.95 -71.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362618929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.212 kcal (2) G-P(sol) polarization free energy of solvation -73.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds