Wall clock time and date at job start Tue Mar 31 2020 17:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30837 * 125.89965 * 2 1 4 4 N 1.40091 * 108.20322 * 180.02562 * 3 2 1 5 5 C 1.46494 * 126.03223 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47304 * 90.02275 * 5 4 3 7 7 H 1.07993 * 119.99641 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99974 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00506 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00116 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.46960 * 90.00232 * 10 8 6 12 12 H 1.48499 * 109.47029 * 210.00688 * 10 8 6 13 13 H 1.48506 * 109.46846 * 330.00304 * 10 8 6 14 14 C 1.34943 * 107.92530 * 359.75682 * 4 3 2 15 15 C 1.50699 * 126.12512 * 180.23998 * 14 4 3 16 16 C 1.35311 * 107.74928 * 0.39029 * 14 4 3 17 17 C 1.50701 * 126.04261 * 179.87298 * 16 14 4 18 18 C 1.52997 * 109.47212 * 269.71507 * 17 16 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 16 20 20 O 1.21288 * 120.00038 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00369 * 180.02562 * 19 18 17 22 22 C 1.46504 * 119.99736 * 359.97438 * 21 19 18 23 23 C 1.39897 * 120.00325 * 180.02562 * 21 19 18 24 24 N 1.33369 * 126.24800 * 359.68939 * 23 21 19 25 25 N 1.28580 * 109.89014 * 179.81695 * 24 23 21 26 26 N 1.28944 * 109.62476 * 0.45158 * 25 24 23 27 27 H 0.96996 * 126.48215 * 179.74484 * 26 25 24 28 28 N 1.31651 * 126.25712 * 179.97438 * 23 21 19 29 29 H 1.08992 * 109.47376 * 269.97432 * 1 2 3 30 30 H 1.09003 * 109.46949 * 29.97771 * 1 2 3 31 31 H 1.09001 * 109.47332 * 149.97579 * 1 2 3 32 32 H 1.09006 * 109.46820 * 210.02240 * 5 4 3 33 33 H 1.08996 * 109.47479 * 330.02113 * 5 4 3 34 34 H 0.96996 * 120.00710 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47581 * 270.17846 * 15 14 4 36 36 H 1.08996 * 109.47395 * 30.17544 * 15 14 4 37 37 H 1.09003 * 109.47313 * 150.17721 * 15 14 4 38 38 H 1.09002 * 109.47060 * 29.71562 * 17 16 14 39 39 H 1.09001 * 109.47380 * 149.71650 * 17 16 14 40 40 H 1.09002 * 109.47153 * 299.99998 * 18 17 16 41 41 H 1.08998 * 109.47533 * 59.99628 * 18 17 16 42 42 H 1.08996 * 109.46784 * 90.00263 * 22 21 19 43 43 H 1.09003 * 109.47146 * 209.99886 * 22 21 19 44 44 H 1.08994 * 109.47096 * 330.00470 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.1956 1.7965 1.4207 7 1 4.6304 1.3801 2.2413 8 6 6.2888 2.5977 1.6729 9 7 6.9775 3.1044 0.6735 10 14 6.7922 2.9638 3.4342 11 1 7.7535 1.9318 3.8989 12 1 7.4330 4.3019 3.4979 13 1 5.5899 2.9488 4.3058 14 6 3.6142 -0.7154 0.0045 15 6 4.8350 -1.5990 0.0109 16 6 2.3272 -1.1331 -0.0006 17 6 1.8599 -2.5658 -0.0003 18 6 1.7014 -3.0509 -1.4427 19 6 1.2347 -4.4837 -1.4425 20 8 1.0469 -5.0602 -0.3920 21 7 1.0261 -5.1247 -2.6096 22 6 1.2524 -4.4283 -3.8784 23 6 0.5923 -6.4548 -2.6094 24 7 0.3531 -7.2061 -1.5337 25 7 -0.0348 -8.3773 -1.8956 26 7 -0.0573 -8.4475 -3.1829 27 1 -0.3091 -9.2190 -3.7141 28 7 0.3508 -7.1951 -3.6708 29 1 -0.3634 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 5.6091 0.9985 -0.5150 33 1 4.5561 2.4336 -0.5130 34 1 7.7464 3.6684 0.8508 35 1 5.1338 -1.8133 -1.0152 36 1 5.6489 -1.0904 0.5276 37 1 4.6053 -2.5323 0.5249 38 1 2.5935 -3.1872 0.5134 39 1 0.9012 -2.6353 0.5137 40 1 0.9678 -2.4295 -1.9564 41 1 2.6600 -2.9814 -1.9568 42 1 2.2858 -4.5735 -4.1932 43 1 0.5814 -4.8296 -4.6379 44 1 1.0585 -3.3637 -3.7481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363055495.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:35 Heat of formation + Delta-G solvation = 166.136232 kcal Electronic energy + Delta-G solvation = -27921.731957 eV Core-core repulsion = 23914.379412 eV Total energy + Delta-G solvation = -4007.352546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.53786 -40.72272 -40.17862 -36.41857 -34.51341 -33.66928 -33.33691 -32.55144 -32.49881 -30.31831 -28.98386 -27.69553 -27.05644 -25.90416 -24.63194 -24.48470 -22.90803 -22.01285 -20.36511 -18.86043 -18.77057 -18.65719 -17.24408 -17.21714 -16.92590 -16.69659 -15.97188 -15.44969 -14.69176 -14.43102 -14.27848 -14.20365 -13.94379 -13.34731 -13.13862 -13.07044 -12.93390 -12.67212 -12.55545 -12.42134 -12.32976 -12.11856 -11.88787 -11.76448 -11.63846 -11.38486 -11.26648 -11.17949 -11.10341 -10.96956 -10.82803 -10.78470 -10.27635 -10.12212 -9.74860 -9.64042 -9.26619 -8.66352 -8.20690 -7.52159 -6.28047 -4.35556 0.57485 1.37190 1.74180 2.36524 2.60214 2.74148 3.20227 3.26923 3.31933 3.32774 3.58766 3.80001 4.10265 4.28520 4.45802 4.75187 4.92212 4.99095 5.05136 5.09999 5.14136 5.24689 5.30281 5.33264 5.59921 5.66350 5.81000 5.88925 5.92733 5.94866 5.98818 6.00214 6.19357 6.21531 6.33059 6.44550 6.50340 6.60761 6.84881 6.99605 7.08981 7.48306 7.64808 7.70975 7.86546 7.91407 8.03241 8.64554 8.73772 9.31239 10.79428 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.023067 B = 0.002225 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.556704 B =12580.049083 C =12844.252361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.052 3.948 3 N -0.296 5.296 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.536 4.536 7 H 0.064 0.936 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.096 3.904 15 C -0.093 4.093 16 C -0.270 4.270 17 C -0.013 4.013 18 C -0.123 4.123 19 C 0.512 3.488 20 O -0.472 6.472 21 N -0.523 5.523 22 C 0.076 3.924 23 C 0.431 3.569 24 N -0.281 5.281 25 N 0.020 4.980 26 N -0.297 5.297 27 H 0.470 0.530 28 N -0.325 5.325 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.268 0.732 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.943 -19.130 -12.284 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 N -0.120 5.120 4 N -0.104 5.104 5 C 0.139 3.861 6 C -0.575 4.575 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.197 1.197 14 C -0.035 4.035 15 C -0.151 4.151 16 C -0.282 4.282 17 C -0.052 4.052 18 C -0.163 4.163 19 C 0.300 3.700 20 O -0.339 6.339 21 N -0.259 5.259 22 C -0.066 4.066 23 C 0.061 3.939 24 N -0.162 5.162 25 N 0.023 4.977 26 N -0.146 5.146 27 H 0.325 0.675 28 N -0.177 5.177 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.820 -18.274 -11.472 24.602 hybrid contribution 0.451 -0.572 0.105 0.736 sum -11.369 -18.846 -11.367 24.771 Atomic orbital electron populations 1.20027 0.88031 1.02051 1.02226 1.21953 0.96104 0.90737 1.02486 1.77283 0.87525 1.22655 1.24526 1.49266 1.05775 1.04203 1.51183 1.19657 0.77929 0.89589 0.98909 1.21312 1.13004 1.31784 0.91372 0.91780 1.24929 0.95741 0.94984 0.98132 1.69915 1.19004 1.32993 1.31044 0.86359 0.78829 0.77804 0.83751 1.20284 1.20859 1.19653 1.20773 0.96102 0.85680 1.00966 1.20418 0.94452 0.97861 1.02362 1.19276 0.91395 0.94815 1.22737 1.19451 1.02035 0.91194 0.92529 1.21850 1.03407 0.88879 1.02212 1.21662 0.76754 0.89726 0.81847 1.90847 1.46123 1.67115 1.29784 1.45295 1.65192 1.05263 1.10168 1.22133 1.03219 0.98137 0.83130 1.21827 0.95515 0.89289 0.87235 1.75788 1.19345 0.96520 1.24588 1.78475 1.08975 1.14325 0.95961 1.50723 1.47369 1.12234 1.04241 0.67500 1.78769 1.27649 0.92190 1.19108 0.91329 0.91604 0.91456 0.93079 0.93041 0.92249 0.91224 0.89938 0.90611 0.91035 0.90951 0.88165 0.88159 0.90807 0.89649 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.12 36.01 0.36 -0.51 16 2 C 0.05 0.94 7.22 -82.40 -0.59 0.34 16 3 N -0.30 -6.60 12.58 33.67 0.42 -6.17 16 4 N -0.32 -7.34 3.60 -58.32 -0.21 -7.55 16 5 C 0.26 6.44 5.81 -5.19 -0.03 6.41 16 6 C -0.54 -14.62 9.39 -34.44 -0.32 -14.94 16 7 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 8 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -24.84 13.29 55.43 0.74 -24.11 16 10 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.10 1.83 6.93 -82.27 -0.57 1.26 16 15 C -0.09 -1.45 9.68 36.01 0.35 -1.10 16 16 C -0.27 -4.54 5.35 -105.05 -0.56 -5.11 16 17 C -0.01 -0.17 4.45 -27.88 -0.12 -0.30 16 18 C -0.12 -1.25 4.23 -27.89 -0.12 -1.37 16 19 C 0.51 6.04 7.64 -10.99 -0.08 5.96 16 20 O -0.47 -7.39 14.71 5.55 0.08 -7.31 16 21 N -0.52 -5.29 3.10 -124.43 -0.39 -5.68 16 22 C 0.08 0.45 10.12 59.85 0.61 1.05 16 23 C 0.43 5.06 8.40 -320.54 -2.69 2.36 16 24 N -0.28 -3.83 10.56 30.07 0.32 -3.51 16 25 N 0.02 0.21 13.43 60.35 0.81 1.02 16 26 N -0.30 -2.16 8.45 60.35 0.51 -1.65 16 27 H 0.47 1.08 8.96 -331.94 -2.98 -1.90 16 28 N -0.32 -3.09 12.27 30.08 0.37 -2.72 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 32 H 0.05 1.26 7.68 -51.93 -0.40 0.87 16 33 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.45 7.74 -51.93 -0.40 1.05 16 37 H 0.08 1.03 7.14 -51.93 -0.37 0.65 16 38 H 0.07 0.99 7.10 -51.93 -0.37 0.62 16 39 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 40 H 0.10 0.85 7.40 -51.93 -0.38 0.46 16 41 H 0.10 0.89 8.11 -51.93 -0.42 0.47 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.44 7.70 -51.93 -0.40 0.04 16 44 H 0.10 0.40 6.44 -51.93 -0.33 0.07 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -35.45 378.52 -9.08 -44.53 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -8.53 Total: -4.33 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -3.88 Total: -4.26 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 2.57 Total: -50.37 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.08 Total: -7.31 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.45 -9.08 -44.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363055495.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.665 kcal (2) G-P(sol) polarization free energy of solvation -35.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds