Wall clock time and date at job start Tue Mar 31 2020 17:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30837 * 125.89965 * 2 1 4 4 N 1.40091 * 108.20322 * 180.02562 * 3 2 1 5 5 C 1.46494 * 126.03223 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47304 * 90.02275 * 5 4 3 7 7 H 1.07993 * 119.99641 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99974 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00506 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00116 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.46960 * 90.00232 * 10 8 6 12 12 H 1.48499 * 109.47029 * 210.00688 * 10 8 6 13 13 H 1.48506 * 109.46846 * 330.00304 * 10 8 6 14 14 C 1.34943 * 107.92530 * 359.75682 * 4 3 2 15 15 C 1.50699 * 126.12512 * 180.23998 * 14 4 3 16 16 C 1.35311 * 107.74928 * 0.39029 * 14 4 3 17 17 C 1.50701 * 126.04261 * 179.87298 * 16 14 4 18 18 C 1.52997 * 109.47212 * 269.71507 * 17 16 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 16 20 20 O 1.21288 * 120.00038 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00369 * 180.02562 * 19 18 17 22 22 C 1.46504 * 119.99736 * 359.97438 * 21 19 18 23 23 C 1.39897 * 120.00325 * 180.02562 * 21 19 18 24 24 N 1.33369 * 126.24800 * 359.68939 * 23 21 19 25 25 N 1.28580 * 109.89014 * 179.81695 * 24 23 21 26 26 N 1.28944 * 109.62476 * 0.45158 * 25 24 23 27 27 H 0.96996 * 126.48215 * 179.74484 * 26 25 24 28 28 N 1.31651 * 126.25712 * 179.97438 * 23 21 19 29 29 H 1.08992 * 109.47376 * 269.97432 * 1 2 3 30 30 H 1.09003 * 109.46949 * 29.97771 * 1 2 3 31 31 H 1.09001 * 109.47332 * 149.97579 * 1 2 3 32 32 H 1.09006 * 109.46820 * 210.02240 * 5 4 3 33 33 H 1.08996 * 109.47479 * 330.02113 * 5 4 3 34 34 H 0.96996 * 120.00710 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47581 * 270.17846 * 15 14 4 36 36 H 1.08996 * 109.47395 * 30.17544 * 15 14 4 37 37 H 1.09003 * 109.47313 * 150.17721 * 15 14 4 38 38 H 1.09002 * 109.47060 * 29.71562 * 17 16 14 39 39 H 1.09001 * 109.47380 * 149.71650 * 17 16 14 40 40 H 1.09002 * 109.47153 * 299.99998 * 18 17 16 41 41 H 1.08998 * 109.47533 * 59.99628 * 18 17 16 42 42 H 1.08996 * 109.46784 * 90.00263 * 22 21 19 43 43 H 1.09003 * 109.47146 * 209.99886 * 22 21 19 44 44 H 1.08994 * 109.47096 * 330.00470 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.1956 1.7965 1.4207 7 1 4.6304 1.3801 2.2413 8 6 6.2888 2.5977 1.6729 9 7 6.9775 3.1044 0.6735 10 14 6.7922 2.9638 3.4342 11 1 7.7535 1.9318 3.8989 12 1 7.4330 4.3019 3.4979 13 1 5.5899 2.9488 4.3058 14 6 3.6142 -0.7154 0.0045 15 6 4.8350 -1.5990 0.0109 16 6 2.3272 -1.1331 -0.0006 17 6 1.8599 -2.5658 -0.0003 18 6 1.7014 -3.0509 -1.4427 19 6 1.2347 -4.4837 -1.4425 20 8 1.0469 -5.0602 -0.3920 21 7 1.0261 -5.1247 -2.6096 22 6 1.2524 -4.4283 -3.8784 23 6 0.5923 -6.4548 -2.6094 24 7 0.3531 -7.2061 -1.5337 25 7 -0.0348 -8.3773 -1.8956 26 7 -0.0573 -8.4475 -3.1829 27 1 -0.3091 -9.2190 -3.7141 28 7 0.3508 -7.1951 -3.6708 29 1 -0.3634 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 5.6091 0.9985 -0.5150 33 1 4.5561 2.4336 -0.5130 34 1 7.7464 3.6684 0.8508 35 1 5.1338 -1.8133 -1.0152 36 1 5.6489 -1.0904 0.5276 37 1 4.6053 -2.5323 0.5249 38 1 2.5935 -3.1872 0.5134 39 1 0.9012 -2.6353 0.5137 40 1 0.9678 -2.4295 -1.9564 41 1 2.6600 -2.9814 -1.9568 42 1 2.2858 -4.5735 -4.1932 43 1 0.5814 -4.8296 -4.6379 44 1 1.0585 -3.3637 -3.7481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363055495.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:34 Heat of formation + Delta-G solvation = 143.339623 kcal Electronic energy + Delta-G solvation = -27922.720493 eV Core-core repulsion = 23914.379412 eV Total energy + Delta-G solvation = -4008.341081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.31365 -42.13029 -41.10212 -37.23135 -36.08686 -34.96462 -34.25673 -34.13726 -33.38096 -31.66670 -30.45706 -28.29283 -28.24146 -27.58565 -25.87472 -25.23857 -24.36356 -23.20333 -21.17152 -20.26695 -20.09058 -19.54521 -18.80027 -18.01207 -17.99109 -17.74710 -17.18337 -16.73018 -16.21879 -15.98263 -15.29729 -15.11802 -14.91021 -14.60623 -14.40648 -14.27310 -13.99237 -13.85383 -13.65008 -13.49417 -13.38434 -13.21011 -13.20567 -13.00577 -12.83108 -12.69065 -12.59992 -12.56182 -12.47627 -12.20682 -12.00363 -11.88720 -11.83756 -11.69477 -11.13870 -10.98784 -10.73566 -10.00527 -9.79465 -9.00149 -8.33614 -6.51046 -0.18247 0.71006 0.88605 1.22187 1.36187 1.37596 1.48710 1.73634 1.77996 1.97926 2.00427 2.34077 2.95697 3.03360 3.34876 3.66889 3.91198 3.98315 4.18210 4.22169 4.25807 4.31265 4.36597 4.55567 4.65433 4.68856 4.76266 4.79571 4.81970 4.89102 4.90560 4.92200 4.99777 5.10059 5.19597 5.20967 5.35712 5.46862 5.52323 5.60619 5.72023 5.82424 5.87638 6.09598 6.35047 6.65045 6.87991 7.13614 7.16384 7.20465 8.72021 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.023067 B = 0.002225 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.556704 B =12580.049083 C =12844.252361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.057 3.943 3 N -0.351 5.351 4 N -0.356 5.356 5 C 0.276 3.724 6 C -0.552 4.552 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.917 5.917 10 Si 0.968 3.032 11 H -0.264 1.264 12 H -0.274 1.274 13 H -0.277 1.277 14 C 0.081 3.919 15 C -0.089 4.089 16 C -0.255 4.255 17 C -0.007 4.007 18 C -0.113 4.113 19 C 0.516 3.484 20 O -0.518 6.518 21 N -0.520 5.520 22 C 0.067 3.933 23 C 0.416 3.584 24 N -0.327 5.327 25 N 0.012 4.988 26 N -0.264 5.264 27 H 0.490 0.510 28 N -0.317 5.317 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.020 0.980 34 H 0.273 0.727 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.746 -20.712 -13.285 27.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.108 4.108 3 N -0.174 5.174 4 N -0.136 5.136 5 C 0.157 3.843 6 C -0.591 4.591 7 H 0.064 0.936 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.792 3.208 11 H -0.189 1.189 12 H -0.199 1.199 13 H -0.202 1.202 14 C -0.048 4.048 15 C -0.147 4.147 16 C -0.267 4.267 17 C -0.047 4.047 18 C -0.152 4.152 19 C 0.306 3.694 20 O -0.388 6.388 21 N -0.255 5.255 22 C -0.073 4.073 23 C 0.045 3.955 24 N -0.208 5.208 25 N 0.015 4.985 26 N -0.118 5.118 27 H 0.350 0.650 28 N -0.170 5.170 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.634 -19.896 -12.525 26.690 hybrid contribution 0.582 -0.220 0.296 0.689 sum -12.052 -20.116 -12.229 26.447 Atomic orbital electron populations 1.20219 0.84738 1.03981 1.03285 1.22775 0.98056 0.90166 0.99847 1.77222 0.87830 1.25086 1.27274 1.48996 1.05291 1.05169 1.54145 1.19106 0.79066 0.88832 0.97332 1.21439 1.13313 1.32328 0.91971 0.93578 1.25718 0.95530 0.94530 1.02099 1.69994 1.19371 1.33299 1.32893 0.85398 0.78330 0.78228 0.78798 1.18922 1.19851 1.20233 1.21444 0.98188 0.84619 1.00565 1.20499 0.92382 0.97763 1.04028 1.19602 0.90264 0.96201 1.20629 1.19415 1.01724 0.88615 0.94896 1.21755 1.05142 0.88124 1.00220 1.21820 0.75944 0.89988 0.81658 1.90836 1.48316 1.68139 1.31537 1.45384 1.64322 1.04818 1.11017 1.22465 1.04318 0.98934 0.81561 1.22071 0.96185 0.90030 0.87168 1.75758 1.21209 0.97612 1.26254 1.78410 1.09338 1.13759 0.96988 1.50787 1.44976 1.12361 1.03719 0.65008 1.78733 1.27265 0.92483 1.18519 0.90587 0.91104 0.88116 0.93435 0.96233 0.91762 0.88583 0.92489 0.88309 0.91546 0.90839 0.85691 0.86321 0.89485 0.88905 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.57 10.12 71.24 0.72 -0.85 16 2 C 0.06 1.99 7.22 43.10 0.31 2.30 16 3 N -0.35 -15.90 12.58 -47.38 -0.60 -16.49 16 4 N -0.36 -16.54 3.60 -338.41 -1.22 -17.76 16 5 C 0.28 14.49 5.81 85.64 0.50 14.99 16 6 C -0.55 -31.16 9.39 25.60 0.24 -30.92 16 7 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 8 C 0.02 1.22 5.46 84.65 0.46 1.69 16 9 N -0.92 -51.96 13.29 21.45 0.28 -51.67 16 10 Si 0.97 43.51 29.54 68.60 2.03 45.53 16 11 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 C 0.08 3.07 6.93 41.40 0.29 3.35 16 15 C -0.09 -2.71 9.68 71.24 0.69 -2.02 16 16 C -0.26 -8.22 5.35 -20.14 -0.11 -8.33 16 17 C -0.01 -0.18 4.45 29.85 0.13 -0.05 16 18 C -0.11 -1.93 4.23 29.85 0.13 -1.80 16 19 C 0.52 11.12 7.64 87.66 0.67 11.79 16 20 O -0.52 -15.77 14.71 -3.05 -0.04 -15.81 16 21 N -0.52 -9.34 3.10 -665.98 -2.06 -11.40 16 22 C 0.07 0.57 10.12 127.77 1.29 1.87 16 23 C 0.42 9.09 8.40 260.70 2.19 11.28 16 24 N -0.33 -8.71 10.56 -58.77 -0.62 -9.33 16 25 N 0.01 0.25 13.43 37.02 0.50 0.75 16 26 N -0.26 -3.32 8.45 37.02 0.31 -3.01 16 27 H 0.49 1.06 8.96 -340.37 -3.05 -1.99 16 28 N -0.32 -5.34 12.27 -58.76 -0.72 -6.06 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.10 1.80 7.92 -2.39 -0.02 1.78 16 32 H 0.05 2.47 7.68 -2.38 -0.02 2.45 16 33 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.06 2.04 7.74 -2.39 -0.02 2.02 16 37 H 0.10 2.52 7.14 -2.39 -0.02 2.50 16 38 H 0.07 1.72 7.10 -2.39 -0.02 1.70 16 39 H 0.07 1.81 7.88 -2.39 -0.02 1.79 16 40 H 0.13 1.56 7.40 -2.39 -0.02 1.54 16 41 H 0.12 1.66 8.11 -2.39 -0.02 1.64 16 42 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.09 0.68 7.70 -2.39 -0.02 0.66 16 44 H 0.12 0.50 6.44 -2.39 -0.02 0.49 16 Total: -1.00 -80.54 378.52 3.37 -77.16 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -2.00 Total: 4.80 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 7.51 Total: 3.30 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -4.12 Total: -114.98 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.04 Total: -15.81 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -80.54 3.37 -77.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363055495.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.504 kcal (2) G-P(sol) polarization free energy of solvation -80.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds