Wall clock time and date at job start Tue Mar 31 2020 18:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35240 * 126.07441 * 2 1 4 4 C 1.40399 * 107.87214 * 180.15584 * 3 2 1 5 5 N 1.40193 * 125.97686 * 179.82580 * 4 3 2 6 6 C 1.34778 * 119.99852 * 359.71516 * 5 4 3 7 7 O 1.21598 * 119.99865 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00282 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99702 * 355.32568 * 8 6 5 10 10 C 1.46497 * 120.00297 * 175.32745 * 8 6 5 11 11 C 1.50700 * 109.46776 * 275.40706 * 10 8 6 12 12 N 1.30518 * 126.34611 * 94.45830 * 11 10 8 13 13 N 1.28603 * 109.67524 * 180.02562 * 12 11 10 14 14 C 1.30522 * 109.67094 * 359.72371 * 13 12 11 15 15 N 1.35493 * 126.34824 * 274.49451 * 11 10 8 16 16 C 1.46498 * 126.97968 * 359.97223 * 15 11 10 17 17 N 1.31212 * 108.05042 * 359.56699 * 4 3 2 18 18 N 1.34966 * 126.06738 * 179.67366 * 2 1 3 19 19 C 1.46495 * 125.98019 * 359.97438 * 18 2 1 20 20 C 1.50703 * 109.47083 * 269.99562 * 19 18 2 21 21 H 1.08001 * 119.99890 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00168 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99794 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00231 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46724 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47281 * 119.99593 * 24 22 20 27 27 H 1.48493 * 109.47149 * 239.99926 * 24 22 20 28 28 H 1.09006 * 109.47486 * 270.32144 * 1 2 3 29 29 H 1.09005 * 109.47355 * 30.32319 * 1 2 3 30 30 H 1.09001 * 109.47367 * 150.32640 * 1 2 3 31 31 H 1.08007 * 126.06649 * 359.97438 * 3 2 1 32 32 H 0.97000 * 120.00152 * 179.71478 * 5 4 3 33 33 H 1.08996 * 109.47711 * 269.99513 * 9 8 6 34 34 H 1.09006 * 109.47508 * 29.99942 * 9 8 6 35 35 H 1.09004 * 109.47271 * 149.99346 * 9 8 6 36 36 H 1.08996 * 109.47456 * 155.40966 * 10 8 6 37 37 H 1.08994 * 109.47182 * 35.40554 * 10 8 6 38 38 H 1.07999 * 126.34917 * 180.30210 * 14 13 12 39 39 H 1.09000 * 109.47261 * 85.05849 * 16 15 11 40 40 H 1.08997 * 109.47319 * 325.05878 * 16 15 11 41 41 H 1.08998 * 109.47055 * 205.05364 * 16 15 11 42 42 H 1.09000 * 109.47046 * 29.99189 * 19 18 2 43 43 H 1.09006 * 109.47229 * 149.99683 * 19 18 2 44 44 H 0.97005 * 119.99897 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0036 5 7 4.7737 1.4750 -0.0083 6 6 4.6370 2.8158 -0.0154 7 8 3.5277 3.3138 -0.0173 8 7 5.7298 3.6047 -0.0193 9 6 7.0638 3.0086 0.0875 10 6 5.5836 5.0581 -0.1303 11 6 5.4682 5.4417 -1.5831 12 7 4.3608 5.6168 -2.2513 13 7 4.6342 5.9376 -3.4663 14 6 5.9286 5.9874 -3.6268 15 7 6.4948 5.6681 -2.4379 16 6 7.9262 5.5900 -2.1363 17 7 3.6336 -0.6576 0.0037 18 7 2.3015 -1.0910 0.0062 19 6 1.8500 -2.4846 0.0147 20 6 1.6958 -2.9540 1.4384 21 1 1.9129 -2.2816 2.2552 22 6 1.2776 -4.2418 1.6982 23 7 1.0127 -5.0604 0.7035 24 14 1.0857 -4.8235 3.4630 25 1 1.4417 -3.7190 4.3896 26 1 -0.3221 -5.2326 3.6991 27 1 1.9845 -5.9809 3.7032 28 1 -0.3634 0.0058 1.0277 29 1 -0.3634 0.8871 -0.5189 30 1 -0.3634 -0.8929 -0.5088 31 1 1.9720 2.1211 -0.0004 32 1 5.6587 1.0777 -0.0064 33 1 7.3455 2.9342 1.1378 34 1 7.0539 2.0136 -0.3575 35 1 7.7846 3.6346 -0.4385 36 1 6.4556 5.5454 0.3059 37 1 4.6864 5.3747 0.4014 38 1 6.4514 6.2348 -4.5389 39 1 8.2634 4.5585 -2.2390 40 1 8.1016 5.9296 -1.1156 41 1 8.4788 6.2235 -2.8301 42 1 0.8911 -2.5589 -0.4982 43 1 2.5845 -3.1076 -0.4958 44 1 0.7181 -5.9664 0.8863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365047591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:16 Heat of formation + Delta-G solvation = 154.255760 kcal Electronic energy + Delta-G solvation = -28268.748313 eV Core-core repulsion = 24260.880592 eV Total energy + Delta-G solvation = -4007.867722 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.34310 -40.80781 -39.76196 -36.23191 -35.19920 -34.87931 -33.36666 -31.87077 -31.13986 -30.66391 -28.48131 -27.62970 -26.98697 -26.30203 -25.96641 -23.06558 -22.61944 -21.83340 -20.68238 -19.74803 -19.20950 -17.72849 -17.48423 -17.06787 -16.65334 -16.29514 -15.98798 -15.52531 -15.42673 -14.84674 -14.54934 -14.29959 -14.17649 -14.04557 -13.89258 -13.54580 -13.22493 -12.98803 -12.78947 -12.48292 -12.42911 -12.19420 -12.12139 -11.66012 -11.59766 -11.34001 -11.05761 -10.82177 -10.52422 -10.49208 -10.39671 -10.22827 -9.98953 -9.67595 -9.48343 -9.47740 -9.13776 -8.62017 -7.85922 -7.35271 -6.22543 -4.29847 1.38868 2.11145 2.26234 2.67355 2.80367 3.11603 3.21947 3.29672 3.34776 3.42537 3.82515 4.00912 4.06036 4.08334 4.25044 4.33521 4.40667 4.46827 4.51310 4.74234 4.93654 5.11051 5.13322 5.18526 5.30771 5.44091 5.55113 5.76627 5.86555 5.93819 6.01153 6.19771 6.27898 6.51730 6.52781 6.54717 6.67944 6.96411 7.04692 7.11464 7.55846 7.70670 7.87562 7.92880 8.12474 8.55990 8.56313 8.71717 8.79941 9.36270 10.84665 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.002411 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.378192 B =11609.604742 C =12086.526034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.286 4.286 4 C 0.280 3.720 5 N -0.642 5.642 6 C 0.713 3.287 7 O -0.540 6.540 8 N -0.632 5.632 9 C 0.073 3.927 10 C 0.225 3.775 11 C 0.152 3.848 12 N -0.259 5.259 13 N -0.297 5.297 14 C 0.147 3.853 15 N -0.476 5.476 16 C 0.070 3.930 17 N -0.325 5.325 18 N -0.319 5.319 19 C 0.259 3.741 20 C -0.533 4.533 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.162 0.838 32 H 0.404 0.596 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.123 0.877 38 H 0.217 0.783 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.434 21.624 -4.083 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.317 4.317 4 C 0.027 3.973 5 N -0.294 5.294 6 C 0.414 3.586 7 O -0.412 6.412 8 N -0.371 5.371 9 C -0.070 4.070 10 C 0.099 3.901 11 C -0.117 4.117 12 N -0.099 5.099 13 N -0.136 5.136 14 C -0.140 4.140 15 N -0.168 5.168 16 C -0.073 4.073 17 N -0.156 5.156 18 N -0.101 5.101 19 C 0.141 3.859 20 C -0.572 4.572 21 H 0.083 0.917 22 C -0.139 4.139 23 N -0.531 5.531 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.207 1.207 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.179 0.821 32 H 0.240 0.760 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.141 0.859 38 H 0.234 0.766 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.772 20.696 -4.431 26.396 hybrid contribution 1.728 -0.187 0.948 1.979 sum 17.500 20.510 -3.483 27.185 Atomic orbital electron populations 1.20331 0.87900 1.02841 1.03123 1.21053 0.94900 0.87116 1.00914 1.21255 0.89633 0.99924 1.20903 1.18657 0.86547 0.89265 1.02828 1.41526 1.07623 1.03654 1.76553 1.15545 0.84323 0.80577 0.78200 1.90942 1.22688 1.72983 1.54571 1.46954 1.05566 1.05606 1.79014 1.21892 0.83532 0.99151 1.02429 1.19480 1.05545 0.79364 0.85734 1.25510 0.83893 1.04986 0.97268 1.74446 1.22122 1.14770 0.98578 1.74363 1.11321 1.17276 1.10667 1.26499 0.92130 1.04271 0.91123 1.46256 1.08775 1.51494 1.10314 1.22163 0.77017 1.04196 1.03938 1.77218 1.00039 1.08268 1.30061 1.48941 1.00857 1.07726 1.52583 1.19672 0.95943 0.71407 0.98880 1.21369 1.46454 0.97920 0.91416 0.91705 1.24933 0.94750 0.96079 0.98108 1.69936 1.45108 1.06935 1.31080 0.86307 0.77860 0.78737 0.83818 1.19582 1.20648 1.20711 0.90450 0.90741 0.90935 0.82109 0.75974 0.91522 0.91094 0.91232 0.88285 0.85938 0.76629 0.89904 0.89153 0.88703 0.92801 0.93107 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 10.11 36.00 0.36 -1.15 16 2 C 0.09 2.02 6.92 -82.29 -0.57 1.45 16 3 C -0.29 -6.24 9.52 -39.84 -0.38 -6.62 16 4 C 0.28 5.95 8.11 -154.36 -1.25 4.70 16 5 N -0.64 -10.48 5.34 -15.50 -0.08 -10.56 16 6 C 0.71 11.03 8.20 -86.92 -0.71 10.31 16 7 O -0.54 -10.35 13.11 5.28 0.07 -10.28 16 8 N -0.63 -6.33 2.87 -188.74 -0.54 -6.87 16 9 C 0.07 0.40 10.29 59.85 0.62 1.02 16 10 C 0.23 1.94 5.71 -5.19 -0.03 1.91 16 11 C 0.15 1.66 7.57 -154.99 -1.17 0.49 16 12 N -0.26 -4.03 12.21 32.80 0.40 -3.63 16 13 N -0.30 -4.25 12.21 29.69 0.36 -3.89 16 14 C 0.15 1.32 12.74 -89.94 -1.15 0.17 16 15 N -0.48 -3.53 3.15 -122.69 -0.39 -3.91 16 16 C 0.07 0.13 10.07 59.85 0.60 0.73 16 17 N -0.33 -7.71 12.59 31.44 0.40 -7.31 16 18 N -0.32 -7.80 3.59 -58.33 -0.21 -8.01 16 19 C 0.26 6.78 5.99 -5.19 -0.03 6.75 16 20 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 21 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 24 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.31 7.07 -51.93 -0.37 0.94 16 31 H 0.16 3.50 5.91 -52.48 -0.31 3.19 16 32 H 0.40 5.29 6.48 -40.82 -0.26 5.03 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.42 6.19 -51.93 -0.32 0.10 16 35 H 0.07 0.18 6.17 -51.93 -0.32 -0.14 16 36 H 0.10 0.39 7.34 -51.93 -0.38 0.01 16 37 H 0.12 1.27 7.53 -51.93 -0.39 0.88 16 38 H 0.22 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.08 0.10 7.30 -51.93 -0.38 -0.28 16 40 H 0.09 0.01 7.44 -51.93 -0.39 -0.38 16 41 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 42 H 0.05 1.40 7.04 -51.93 -0.37 1.04 16 43 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -39.62 372.64 -8.36 -47.98 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.57 Total: 2.98 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -4.13 Total: 6.22 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: 0.68 Total: -68.81 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -39.62 -8.36 -47.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365047591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.234 kcal (2) G-P(sol) polarization free energy of solvation -39.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds