Wall clock time and date at job start Tue Mar 31 2020 18:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35240 * 126.07441 * 2 1 4 4 C 1.40399 * 107.87214 * 180.15584 * 3 2 1 5 5 N 1.40193 * 125.97686 * 179.82580 * 4 3 2 6 6 C 1.34778 * 119.99852 * 359.71516 * 5 4 3 7 7 O 1.21598 * 119.99865 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00282 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99702 * 355.32568 * 8 6 5 10 10 C 1.46497 * 120.00297 * 175.32745 * 8 6 5 11 11 C 1.50700 * 109.46776 * 275.40706 * 10 8 6 12 12 N 1.30518 * 126.34611 * 94.45830 * 11 10 8 13 13 N 1.28603 * 109.67524 * 180.02562 * 12 11 10 14 14 C 1.30522 * 109.67094 * 359.72371 * 13 12 11 15 15 N 1.35493 * 126.34824 * 274.49451 * 11 10 8 16 16 C 1.46498 * 126.97968 * 359.97223 * 15 11 10 17 17 N 1.31212 * 108.05042 * 359.56699 * 4 3 2 18 18 N 1.34966 * 126.06738 * 179.67366 * 2 1 3 19 19 C 1.46495 * 125.98019 * 359.97438 * 18 2 1 20 20 C 1.50703 * 109.47083 * 269.99562 * 19 18 2 21 21 H 1.08001 * 119.99890 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00168 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99794 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00231 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46724 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47281 * 119.99593 * 24 22 20 27 27 H 1.48493 * 109.47149 * 239.99926 * 24 22 20 28 28 H 1.09006 * 109.47486 * 270.32144 * 1 2 3 29 29 H 1.09005 * 109.47355 * 30.32319 * 1 2 3 30 30 H 1.09001 * 109.47367 * 150.32640 * 1 2 3 31 31 H 1.08007 * 126.06649 * 359.97438 * 3 2 1 32 32 H 0.97000 * 120.00152 * 179.71478 * 5 4 3 33 33 H 1.08996 * 109.47711 * 269.99513 * 9 8 6 34 34 H 1.09006 * 109.47508 * 29.99942 * 9 8 6 35 35 H 1.09004 * 109.47271 * 149.99346 * 9 8 6 36 36 H 1.08996 * 109.47456 * 155.40966 * 10 8 6 37 37 H 1.08994 * 109.47182 * 35.40554 * 10 8 6 38 38 H 1.07999 * 126.34917 * 180.30210 * 14 13 12 39 39 H 1.09000 * 109.47261 * 85.05849 * 16 15 11 40 40 H 1.08997 * 109.47319 * 325.05878 * 16 15 11 41 41 H 1.08998 * 109.47055 * 205.05364 * 16 15 11 42 42 H 1.09000 * 109.47046 * 29.99189 * 19 18 2 43 43 H 1.09006 * 109.47229 * 149.99683 * 19 18 2 44 44 H 0.97005 * 119.99897 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0036 5 7 4.7737 1.4750 -0.0083 6 6 4.6370 2.8158 -0.0154 7 8 3.5277 3.3138 -0.0173 8 7 5.7298 3.6047 -0.0193 9 6 7.0638 3.0086 0.0875 10 6 5.5836 5.0581 -0.1303 11 6 5.4682 5.4417 -1.5831 12 7 4.3608 5.6168 -2.2513 13 7 4.6342 5.9376 -3.4663 14 6 5.9286 5.9874 -3.6268 15 7 6.4948 5.6681 -2.4379 16 6 7.9262 5.5900 -2.1363 17 7 3.6336 -0.6576 0.0037 18 7 2.3015 -1.0910 0.0062 19 6 1.8500 -2.4846 0.0147 20 6 1.6958 -2.9540 1.4384 21 1 1.9129 -2.2816 2.2552 22 6 1.2776 -4.2418 1.6982 23 7 1.0127 -5.0604 0.7035 24 14 1.0857 -4.8235 3.4630 25 1 1.4417 -3.7190 4.3896 26 1 -0.3221 -5.2326 3.6991 27 1 1.9845 -5.9809 3.7032 28 1 -0.3634 0.0058 1.0277 29 1 -0.3634 0.8871 -0.5189 30 1 -0.3634 -0.8929 -0.5088 31 1 1.9720 2.1211 -0.0004 32 1 5.6587 1.0777 -0.0064 33 1 7.3455 2.9342 1.1378 34 1 7.0539 2.0136 -0.3575 35 1 7.7846 3.6346 -0.4385 36 1 6.4556 5.5454 0.3059 37 1 4.6864 5.3747 0.4014 38 1 6.4514 6.2348 -4.5389 39 1 8.2634 4.5585 -2.2390 40 1 8.1016 5.9296 -1.1156 41 1 8.4788 6.2235 -2.8301 42 1 0.8911 -2.5589 -0.4982 43 1 2.5845 -3.1076 -0.4958 44 1 0.7181 -5.9664 0.8863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365047591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:15 Heat of formation + Delta-G solvation = 127.491656 kcal Electronic energy + Delta-G solvation = -28269.908892 eV Core-core repulsion = 24260.880592 eV Total energy + Delta-G solvation = -4009.028300 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.07021 -42.35040 -41.09297 -37.18539 -36.36185 -35.82945 -35.31541 -33.21435 -32.65312 -32.11833 -29.05327 -28.67838 -28.04580 -27.87560 -27.14323 -24.94774 -23.30812 -23.00826 -21.73782 -21.28750 -20.52769 -18.93429 -18.73573 -18.15341 -17.92195 -17.52337 -17.10611 -16.89798 -16.36888 -16.17284 -15.94176 -15.80941 -15.16929 -15.10024 -14.65873 -14.42320 -14.31001 -14.09327 -13.86140 -13.68804 -13.62497 -13.50799 -13.17294 -13.15383 -13.04815 -12.82123 -12.67454 -12.47047 -12.26269 -12.08906 -11.59635 -11.35284 -11.26914 -11.13605 -11.02386 -10.73406 -10.38645 -10.01090 -9.57282 -9.08891 -8.32261 -6.50087 0.64853 1.01303 1.18276 1.37500 1.38659 1.51654 1.57234 1.70050 1.84697 2.11527 2.34868 2.36162 2.84005 2.97132 3.33566 3.71355 3.83134 3.91003 3.94586 4.09053 4.14575 4.35707 4.41820 4.44587 4.61372 4.62803 4.71123 4.71303 4.77808 4.84911 4.88834 4.91704 4.96835 5.00951 5.13969 5.16084 5.19994 5.42822 5.54403 5.64127 5.81281 5.95380 6.00559 6.26452 6.55450 6.63619 7.06411 7.20831 7.36326 7.79113 8.73872 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.002411 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.378192 B =11609.604742 C =12086.526034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.087 3.913 3 C -0.298 4.298 4 C 0.291 3.709 5 N -0.634 5.634 6 C 0.706 3.294 7 O -0.583 6.583 8 N -0.617 5.617 9 C 0.063 3.937 10 C 0.224 3.776 11 C 0.151 3.849 12 N -0.329 5.329 13 N -0.361 5.361 14 C 0.162 3.838 15 N -0.465 5.465 16 C 0.055 3.945 17 N -0.358 5.358 18 N -0.343 5.343 19 C 0.275 3.725 20 C -0.551 4.551 21 H 0.049 0.951 22 C 0.022 3.978 23 N -0.919 5.919 24 Si 0.973 3.027 25 H -0.273 1.273 26 H -0.268 1.268 27 H -0.273 1.273 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.162 0.838 32 H 0.419 0.581 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.158 0.842 37 H 0.098 0.902 38 H 0.260 0.740 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.051 0.949 43 H 0.025 0.975 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.333 22.791 -3.175 30.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.329 4.329 4 C 0.036 3.964 5 N -0.288 5.288 6 C 0.407 3.593 7 O -0.458 6.458 8 N -0.355 5.355 9 C -0.078 4.078 10 C 0.098 3.902 11 C -0.120 4.120 12 N -0.170 5.170 13 N -0.200 5.200 14 C -0.127 4.127 15 N -0.156 5.156 16 C -0.085 4.085 17 N -0.188 5.188 18 N -0.125 5.125 19 C 0.156 3.844 20 C -0.589 4.589 21 H 0.068 0.932 22 C -0.179 4.179 23 N -0.557 5.557 24 Si 0.797 3.203 25 H -0.198 1.198 26 H -0.193 1.193 27 H -0.198 1.198 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.179 0.821 32 H 0.258 0.742 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.175 0.825 37 H 0.116 0.884 38 H 0.276 0.724 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.069 0.931 43 H 0.043 0.957 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.765 21.895 -3.529 29.051 hybrid contribution 1.000 -0.404 0.592 1.231 sum 19.764 21.490 -2.936 29.344 Atomic orbital electron populations 1.20458 0.85436 1.04059 1.03995 1.21695 0.96610 0.86458 0.99525 1.21383 0.90198 0.99773 1.21555 1.18946 0.88058 0.88963 1.00423 1.41537 1.06963 1.03827 1.76507 1.15871 0.85278 0.80321 0.77865 1.90908 1.25032 1.73558 1.56336 1.46972 1.05722 1.05737 1.77059 1.22283 0.81541 0.99539 1.04475 1.19784 1.07179 0.78502 0.84703 1.25699 0.84032 1.04209 0.98028 1.74301 1.25358 1.17507 0.99797 1.74207 1.14623 1.20201 1.10989 1.27272 0.91065 1.01644 0.92701 1.46486 1.10356 1.49797 1.08943 1.22699 0.73591 1.05853 1.06357 1.77137 1.00030 1.09508 1.32164 1.48759 1.01645 1.07452 1.54688 1.19254 0.94873 0.72335 0.97891 1.21455 1.47404 0.98370 0.91663 0.93234 1.25752 0.93931 0.95864 1.02366 1.70017 1.45160 1.07429 1.33130 0.85279 0.78467 0.78096 0.78455 1.19807 1.19265 1.19835 0.89632 0.87973 0.91176 0.82111 0.74175 0.89475 0.91564 0.87255 0.82453 0.88392 0.72396 0.88673 0.86639 0.86028 0.93144 0.95715 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.97 10.11 71.23 0.72 -2.25 16 2 C 0.09 3.96 6.92 41.38 0.29 4.25 16 3 C -0.30 -13.36 9.52 22.10 0.21 -13.15 16 4 C 0.29 12.64 8.11 133.31 1.08 13.72 16 5 N -0.63 -20.63 5.34 -321.22 -1.71 -22.34 16 6 C 0.71 21.67 8.20 179.05 1.47 23.14 16 7 O -0.58 -23.03 13.11 -4.02 -0.05 -23.09 16 8 N -0.62 -11.07 2.87 -869.32 -2.50 -13.56 16 9 C 0.06 0.45 10.29 127.77 1.31 1.76 16 10 C 0.22 3.39 5.71 85.63 0.49 3.88 16 11 C 0.15 3.12 7.57 137.98 1.04 4.16 16 12 N -0.33 -10.60 12.21 -50.16 -0.61 -11.21 16 13 N -0.36 -10.57 12.21 -59.99 -0.73 -11.30 16 14 C 0.16 2.61 12.74 180.11 2.29 4.91 16 15 N -0.47 -5.52 3.15 -542.08 -1.71 -7.23 16 16 C 0.06 -0.08 10.07 127.77 1.29 1.21 16 17 N -0.36 -17.47 12.59 -54.44 -0.69 -18.16 16 18 N -0.34 -17.38 3.59 -338.46 -1.22 -18.59 16 19 C 0.28 15.01 5.99 85.64 0.51 15.52 16 20 C -0.55 -31.50 9.39 25.60 0.24 -31.26 16 21 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 22 C 0.02 1.20 5.46 84.65 0.46 1.66 16 23 N -0.92 -52.62 13.29 21.45 0.28 -52.33 16 24 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 28 H 0.09 2.97 8.14 -2.38 -0.02 2.96 16 29 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 30 H 0.07 2.57 7.07 -2.39 -0.02 2.56 16 31 H 0.16 7.25 5.91 -2.91 -0.02 7.23 16 32 H 0.42 10.62 6.48 -92.71 -0.60 10.02 16 33 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.07 0.59 6.19 -2.38 -0.01 0.57 16 35 H 0.11 -0.06 6.17 -2.38 -0.01 -0.08 16 36 H 0.16 0.47 7.34 -2.39 -0.02 0.46 16 37 H 0.10 2.03 7.53 -2.39 -0.02 2.01 16 38 H 0.26 1.33 8.06 -2.91 -0.02 1.30 16 39 H 0.09 -0.29 7.30 -2.39 -0.02 -0.31 16 40 H 0.12 -0.70 7.44 -2.39 -0.02 -0.72 16 41 H 0.12 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.05 2.73 7.04 -2.39 -0.02 2.72 16 43 H 0.02 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 Total: -1.00 -93.44 372.64 4.96 -88.48 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.46 Total: 16.16 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 11.41 Total: 27.55 kcal Atomic # 7 Polarization: -145.85 SS G_CDS: -8.88 Total: -154.73 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -93.44 4.96 -88.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365047591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.972 kcal (2) G-P(sol) polarization free energy of solvation -93.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds