Wall clock time and date at job start Tue Mar 31 2020 18:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.55206 * 2 1 4 4 C 1.53293 * 109.50982 * 239.87707 * 2 1 3 5 5 N 1.47152 * 108.38567 * 292.37375 * 4 2 1 6 6 C 1.34773 * 120.97870 * 129.73807 * 5 4 2 7 7 O 1.21282 * 120.00468 * 359.72398 * 6 5 4 8 8 C 1.50707 * 119.99657 * 179.71924 * 6 5 4 9 9 H 1.08996 * 109.47252 * 323.90240 * 8 6 5 10 10 C 1.50697 * 109.46931 * 83.90399 * 8 6 5 11 11 H 1.08007 * 120.00037 * 30.21530 * 10 8 6 12 12 C 1.37875 * 119.99970 * 210.21992 * 10 8 6 13 13 N 1.31520 * 120.00196 * 180.62584 * 12 10 8 14 14 Si 1.86803 * 120.00029 * 0.62882 * 12 10 8 15 15 H 1.48495 * 109.47174 * 93.61020 * 14 12 10 16 16 H 1.48496 * 109.47066 * 213.61249 * 14 12 10 17 17 H 1.48501 * 109.46994 * 333.61157 * 14 12 10 18 18 C 1.50699 * 109.46920 * 203.89884 * 8 6 5 19 19 C 1.38241 * 120.00245 * 291.58783 * 18 8 6 20 20 C 1.38234 * 120.00132 * 179.76627 * 19 18 8 21 21 C 1.38241 * 119.99485 * 0.48686 * 20 19 18 22 22 C 1.38231 * 120.00676 * 359.78947 * 21 20 19 23 23 C 1.38239 * 119.99729 * 359.95613 * 22 21 20 24 24 C 1.47147 * 118.03571 * 309.47352 * 5 4 2 25 25 C 1.53293 * 108.39002 * 50.52923 * 24 5 4 26 26 H 1.09001 * 109.51087 * 67.62121 * 25 24 5 27 27 C 1.52999 * 109.51484 * 187.77690 * 25 24 5 28 28 O 1.42898 * 109.46978 * 185.00033 * 27 25 24 29 29 O 1.42955 * 109.51175 * 120.12827 * 2 1 3 30 30 H 1.09003 * 109.47048 * 299.87648 * 1 2 3 31 31 H 1.09004 * 109.47272 * 59.86991 * 1 2 3 32 32 H 1.08993 * 109.46990 * 179.86862 * 1 2 3 33 33 H 1.08997 * 109.46779 * 180.12389 * 3 2 1 34 34 H 1.08999 * 109.47205 * 300.12883 * 3 2 1 35 35 H 1.09004 * 109.47011 * 60.13150 * 3 2 1 36 36 H 1.08999 * 109.68015 * 172.65761 * 4 2 1 37 37 H 1.09000 * 109.68583 * 52.10221 * 4 2 1 38 38 H 0.96993 * 119.99873 * 180.02562 * 13 12 10 39 39 H 1.08000 * 119.99371 * 0.02562 * 19 18 8 40 40 H 1.07994 * 120.00210 * 180.25173 * 20 19 18 41 41 H 1.08003 * 119.99288 * 179.76670 * 21 20 19 42 42 H 1.07996 * 120.00792 * 179.97438 * 22 21 20 43 43 H 1.07999 * 120.00371 * 179.97438 * 23 22 21 44 44 H 1.08999 * 109.67935 * 170.25465 * 24 5 4 45 45 H 1.09005 * 109.67773 * 290.76731 * 24 5 4 46 46 H 1.09001 * 109.46571 * 304.99598 * 27 25 24 47 47 H 1.08992 * 109.47077 * 65.00065 * 27 25 24 48 48 H 0.96697 * 113.99990 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 6 2.0420 -0.7251 -1.2498 5 7 1.6960 -2.1507 -1.1337 6 6 1.0761 -2.7983 -2.1400 7 8 0.7906 -2.2046 -3.1584 8 6 0.7376 -4.2601 -1.9999 9 1 1.5270 -4.7640 -1.4422 10 6 -0.5690 -4.4048 -1.2632 11 1 -1.3248 -3.6380 -1.3484 12 6 -0.7996 -5.5161 -0.4804 13 7 -1.9448 -5.6484 0.1527 14 14 0.5144 -6.8340 -0.3190 15 1 1.3437 -6.5616 0.8824 16 1 -0.1323 -8.1638 -0.1830 17 1 1.3765 -6.8241 -1.5281 18 6 0.6144 -4.8805 -3.3678 19 6 -0.4346 -4.5264 -4.1955 20 6 -0.5449 -5.0919 -5.4520 21 6 0.3883 -6.0190 -5.8770 22 6 1.4341 -6.3774 -5.0472 23 6 1.5473 -5.8080 -3.7926 24 6 2.0521 -2.8497 0.1112 25 6 1.5396 -2.0210 1.2947 26 1 0.4497 -2.0284 1.2994 27 6 2.0615 -2.6202 2.6022 28 8 1.4904 -1.9191 3.7087 29 8 2.0075 -0.6763 1.1654 30 1 -0.3633 0.5119 0.8911 31 1 -0.3634 0.5159 -0.8888 32 1 -0.3633 -1.0276 -0.0024 33 1 3.1320 1.4402 -0.0022 34 1 1.6776 1.9569 -0.8888 35 1 1.6814 1.9555 0.8912 36 1 3.1240 -0.6147 -1.3208 37 1 1.5704 -0.3040 -2.1377 38 1 -2.1069 -6.4300 0.7037 39 1 -1.1657 -3.8048 -3.8619 40 1 -1.3622 -4.8122 -6.1002 41 1 0.3000 -6.4636 -6.8573 42 1 2.1629 -7.1021 -5.3790 43 1 2.3641 -6.0883 -3.1440 44 1 1.5872 -3.8354 0.1246 45 1 3.1352 -2.9537 0.1768 46 1 1.7830 -3.6727 2.6561 47 1 3.1471 -2.5294 2.6357 48 1 1.7773 -2.2466 4.5722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413159217.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:18 Heat of formation + Delta-G solvation = -98.654584 kcal Electronic energy + Delta-G solvation = -30841.562522 eV Core-core repulsion = 26861.682626 eV Total energy + Delta-G solvation = -3979.879896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.34672 -38.88376 -37.65760 -36.60197 -34.39642 -33.78747 -33.37895 -31.54478 -30.14347 -29.81121 -28.16506 -27.23705 -26.25056 -25.22021 -23.36739 -21.87449 -21.70894 -20.99077 -19.49090 -18.55052 -17.33211 -17.11537 -16.66811 -16.48806 -16.05369 -15.42274 -15.07698 -14.67082 -14.58328 -14.52986 -14.16918 -13.99535 -13.70684 -13.20253 -13.12617 -12.84086 -12.73747 -12.66464 -12.41409 -12.20875 -12.15102 -11.94815 -11.72862 -11.63267 -11.48052 -11.18711 -11.08201 -11.00925 -10.89145 -10.53449 -10.28944 -10.21579 -9.98302 -9.94524 -9.63553 -9.59193 -8.91795 -8.80168 -8.12166 -8.07088 -7.82476 -6.34178 -4.38523 2.12623 2.20556 3.04085 3.19919 3.23028 3.34595 3.50498 3.76154 4.16659 4.27304 4.59638 4.88738 4.97864 5.04281 5.07335 5.23071 5.28598 5.37469 5.49969 5.54713 5.56123 5.59002 5.61909 5.70154 5.72496 5.76982 5.80320 5.93281 5.97037 6.01100 6.05876 6.12483 6.19013 6.21601 6.26894 6.30806 6.41985 6.57136 6.71017 6.84982 6.91665 7.15883 7.23096 7.26580 7.44567 7.59516 7.70375 7.77954 7.92122 8.20834 8.66809 8.93006 9.22053 10.76594 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012094 B = 0.005202 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.677005 B = 5380.836999 C = 6725.427794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.100 3.900 3 C -0.133 4.133 4 C 0.090 3.910 5 N -0.614 5.614 6 C 0.543 3.457 7 O -0.551 6.551 8 C 0.034 3.966 9 H 0.057 0.943 10 C -0.508 4.508 11 H 0.082 0.918 12 C 0.087 3.913 13 N -0.879 5.879 14 Si 0.849 3.151 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.244 1.244 18 C -0.039 4.039 19 C -0.063 4.063 20 C -0.134 4.134 21 C -0.140 4.140 22 C -0.135 4.135 23 C -0.131 4.131 24 C 0.085 3.915 25 C 0.077 3.923 26 H 0.085 0.915 27 C 0.088 3.912 28 O -0.563 6.563 29 O -0.365 6.365 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.269 0.731 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.052 0.948 48 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.561 5.071 1.471 10.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.060 3.940 3 C -0.190 4.190 4 C -0.033 4.033 5 N -0.348 5.348 6 C 0.334 3.666 7 O -0.428 6.428 8 C 0.013 3.987 9 H 0.075 0.925 10 C -0.545 4.545 11 H 0.100 0.900 12 C -0.118 4.118 13 N -0.514 5.514 14 Si 0.675 3.325 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.168 1.168 18 C -0.040 4.040 19 C -0.081 4.081 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.149 4.149 24 C -0.039 4.039 25 C 0.019 3.981 26 H 0.103 0.897 27 C 0.009 3.991 28 O -0.368 6.368 29 O -0.285 6.285 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 9.101 5.677 0.679 10.749 hybrid contribution 0.634 -1.452 0.554 1.678 sum 9.735 4.225 1.233 10.684 Atomic orbital electron populations 1.22354 0.94907 1.03873 1.02139 1.21842 0.94111 0.92608 0.85433 1.21690 1.01594 0.93147 1.02603 1.22191 0.99930 0.82082 0.99087 1.47964 1.60630 1.09748 1.16459 1.21171 0.73940 0.90345 0.81117 1.90579 1.53451 1.69451 1.29289 1.18408 0.99786 0.88278 0.92269 0.92468 1.20434 0.98622 1.07976 1.27510 0.90040 1.24933 0.95366 0.97105 0.94445 1.69851 1.22945 1.29094 1.29521 0.87254 0.83074 0.82421 0.79752 1.19900 1.20770 1.16809 1.20132 0.93334 0.95336 0.95248 1.20925 0.97043 0.97731 0.92440 1.21064 0.99154 0.98193 0.96772 1.20882 0.96181 0.99553 0.99240 1.20873 0.98748 1.00890 0.94754 1.21051 0.99233 0.98695 0.95950 1.22262 0.99973 0.98009 0.83633 1.22438 1.00449 0.82574 0.92685 0.89711 1.22084 0.96790 0.94815 0.85388 1.86548 1.72358 1.61540 1.16311 1.87957 1.72092 1.25109 1.43304 0.92025 0.91757 0.90915 0.91939 0.91036 0.91586 0.91653 0.88459 0.92087 0.86051 0.87108 0.87368 0.87342 0.87217 0.87150 0.91622 0.91659 0.93000 0.77809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 8.09 37.16 0.30 -2.51 16 2 C 0.10 1.50 1.11 -90.46 -0.10 1.40 16 3 C -0.13 -1.56 8.85 37.16 0.33 -1.23 16 4 C 0.09 1.44 5.31 -3.53 -0.02 1.42 16 5 N -0.61 -11.29 2.54 -172.28 -0.44 -11.73 16 6 C 0.54 11.68 6.80 -10.98 -0.07 11.61 16 7 O -0.55 -12.95 14.74 5.56 0.08 -12.87 16 8 C 0.03 0.76 1.01 -94.07 -0.09 0.66 16 9 H 0.06 1.20 3.90 -51.93 -0.20 1.00 16 10 C -0.51 -12.81 7.56 -34.44 -0.26 -13.07 16 11 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 12 C 0.09 2.22 5.47 -17.82 -0.10 2.13 16 13 N -0.88 -24.40 13.96 55.43 0.77 -23.62 16 14 Si 0.85 18.68 26.55 -169.99 -4.51 14.17 16 15 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.24 -5.07 4.37 56.52 0.25 -4.82 16 18 C -0.04 -0.87 4.20 -104.62 -0.44 -1.31 16 19 C -0.06 -1.38 8.07 -39.58 -0.32 -1.70 16 20 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 21 C -0.14 -2.43 10.05 -39.58 -0.40 -2.83 16 22 C -0.13 -2.39 10.05 -39.58 -0.40 -2.78 16 23 C -0.13 -2.61 8.45 -39.58 -0.33 -2.94 16 24 C 0.09 1.42 5.66 -3.54 -0.02 1.40 16 25 C 0.08 1.27 2.67 -26.58 -0.07 1.19 16 26 H 0.09 1.62 6.25 -51.93 -0.32 1.29 16 27 C 0.09 1.20 6.71 37.16 0.25 1.45 16 28 O -0.56 -7.85 13.63 -39.71 -0.54 -8.39 16 29 O -0.37 -5.93 9.84 -39.71 -0.39 -6.32 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.39 6.11 -51.93 -0.32 1.07 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.10 1.63 7.08 -51.93 -0.37 1.26 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.12 2.81 7.71 -52.49 -0.40 2.41 16 40 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.11 2.02 7.13 -52.49 -0.37 1.64 16 44 H 0.11 2.02 5.02 -51.93 -0.26 1.76 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.38 3.22 9.12 45.56 0.42 3.63 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -31.15 376.07 -8.13 -39.28 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -6.62 Total: 13.84 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -2.14 Total: -10.02 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.34 Total: -35.35 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.85 Total: -27.57 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -4.51 Total: 14.17 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.15 -8.13 -39.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413159217.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.374 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds