Wall clock time and date at job start Tue Mar 31 2020 18:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.55206 * 2 1 4 4 C 1.53293 * 109.50982 * 239.87707 * 2 1 3 5 5 N 1.47152 * 108.38567 * 292.37375 * 4 2 1 6 6 C 1.34773 * 120.97870 * 129.73807 * 5 4 2 7 7 O 1.21282 * 120.00468 * 359.72398 * 6 5 4 8 8 C 1.50707 * 119.99657 * 179.71924 * 6 5 4 9 9 H 1.08996 * 109.47252 * 323.90240 * 8 6 5 10 10 C 1.50697 * 109.46931 * 83.90399 * 8 6 5 11 11 H 1.08007 * 120.00037 * 30.21530 * 10 8 6 12 12 C 1.37875 * 119.99970 * 210.21992 * 10 8 6 13 13 N 1.31520 * 120.00196 * 180.62584 * 12 10 8 14 14 Si 1.86803 * 120.00029 * 0.62882 * 12 10 8 15 15 H 1.48495 * 109.47174 * 93.61020 * 14 12 10 16 16 H 1.48496 * 109.47066 * 213.61249 * 14 12 10 17 17 H 1.48501 * 109.46994 * 333.61157 * 14 12 10 18 18 C 1.50699 * 109.46920 * 203.89884 * 8 6 5 19 19 C 1.38241 * 120.00245 * 291.58783 * 18 8 6 20 20 C 1.38234 * 120.00132 * 179.76627 * 19 18 8 21 21 C 1.38241 * 119.99485 * 0.48686 * 20 19 18 22 22 C 1.38231 * 120.00676 * 359.78947 * 21 20 19 23 23 C 1.38239 * 119.99729 * 359.95613 * 22 21 20 24 24 C 1.47147 * 118.03571 * 309.47352 * 5 4 2 25 25 C 1.53293 * 108.39002 * 50.52923 * 24 5 4 26 26 H 1.09001 * 109.51087 * 67.62121 * 25 24 5 27 27 C 1.52999 * 109.51484 * 187.77690 * 25 24 5 28 28 O 1.42898 * 109.46978 * 185.00033 * 27 25 24 29 29 O 1.42955 * 109.51175 * 120.12827 * 2 1 3 30 30 H 1.09003 * 109.47048 * 299.87648 * 1 2 3 31 31 H 1.09004 * 109.47272 * 59.86991 * 1 2 3 32 32 H 1.08993 * 109.46990 * 179.86862 * 1 2 3 33 33 H 1.08997 * 109.46779 * 180.12389 * 3 2 1 34 34 H 1.08999 * 109.47205 * 300.12883 * 3 2 1 35 35 H 1.09004 * 109.47011 * 60.13150 * 3 2 1 36 36 H 1.08999 * 109.68015 * 172.65761 * 4 2 1 37 37 H 1.09000 * 109.68583 * 52.10221 * 4 2 1 38 38 H 0.96993 * 119.99873 * 180.02562 * 13 12 10 39 39 H 1.08000 * 119.99371 * 0.02562 * 19 18 8 40 40 H 1.07994 * 120.00210 * 180.25173 * 20 19 18 41 41 H 1.08003 * 119.99288 * 179.76670 * 21 20 19 42 42 H 1.07996 * 120.00792 * 179.97438 * 22 21 20 43 43 H 1.07999 * 120.00371 * 179.97438 * 23 22 21 44 44 H 1.08999 * 109.67935 * 170.25465 * 24 5 4 45 45 H 1.09005 * 109.67773 * 290.76731 * 24 5 4 46 46 H 1.09001 * 109.46571 * 304.99598 * 27 25 24 47 47 H 1.08992 * 109.47077 * 65.00065 * 27 25 24 48 48 H 0.96697 * 113.99990 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 6 2.0420 -0.7251 -1.2498 5 7 1.6960 -2.1507 -1.1337 6 6 1.0761 -2.7983 -2.1400 7 8 0.7906 -2.2046 -3.1584 8 6 0.7376 -4.2601 -1.9999 9 1 1.5270 -4.7640 -1.4422 10 6 -0.5690 -4.4048 -1.2632 11 1 -1.3248 -3.6380 -1.3484 12 6 -0.7996 -5.5161 -0.4804 13 7 -1.9448 -5.6484 0.1527 14 14 0.5144 -6.8340 -0.3190 15 1 1.3437 -6.5616 0.8824 16 1 -0.1323 -8.1638 -0.1830 17 1 1.3765 -6.8241 -1.5281 18 6 0.6144 -4.8805 -3.3678 19 6 -0.4346 -4.5264 -4.1955 20 6 -0.5449 -5.0919 -5.4520 21 6 0.3883 -6.0190 -5.8770 22 6 1.4341 -6.3774 -5.0472 23 6 1.5473 -5.8080 -3.7926 24 6 2.0521 -2.8497 0.1112 25 6 1.5396 -2.0210 1.2947 26 1 0.4497 -2.0284 1.2994 27 6 2.0615 -2.6202 2.6022 28 8 1.4904 -1.9191 3.7087 29 8 2.0075 -0.6763 1.1654 30 1 -0.3633 0.5119 0.8911 31 1 -0.3634 0.5159 -0.8888 32 1 -0.3633 -1.0276 -0.0024 33 1 3.1320 1.4402 -0.0022 34 1 1.6776 1.9569 -0.8888 35 1 1.6814 1.9555 0.8912 36 1 3.1240 -0.6147 -1.3208 37 1 1.5704 -0.3040 -2.1377 38 1 -2.1069 -6.4300 0.7037 39 1 -1.1657 -3.8048 -3.8619 40 1 -1.3622 -4.8122 -6.1002 41 1 0.3000 -6.4636 -6.8573 42 1 2.1629 -7.1021 -5.3790 43 1 2.3641 -6.0883 -3.1440 44 1 1.5872 -3.8354 0.1246 45 1 3.1352 -2.9537 0.1768 46 1 1.7830 -3.6727 2.6561 47 1 3.1471 -2.5294 2.6357 48 1 1.7773 -2.2466 4.5722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413159217.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:17 Heat of formation + Delta-G solvation = -120.419334 kcal Electronic energy + Delta-G solvation = -30842.506312 eV Core-core repulsion = 26861.682626 eV Total energy + Delta-G solvation = -3980.823686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.79167 -40.36755 -39.17615 -37.70237 -35.96377 -35.40896 -34.74902 -33.33979 -31.63631 -31.09006 -29.75893 -28.42764 -27.66828 -26.62184 -25.12110 -23.38448 -22.92903 -22.48647 -20.86328 -20.06501 -19.09158 -18.38891 -18.24420 -17.85851 -17.48425 -16.89813 -16.59752 -16.09273 -15.96850 -15.89536 -15.64493 -15.41954 -15.07362 -14.82253 -14.47415 -14.46050 -14.21965 -14.13443 -13.79424 -13.60259 -13.40204 -13.19228 -13.06392 -12.95838 -12.87774 -12.82739 -12.70630 -12.33301 -12.13159 -12.08588 -11.94603 -11.62779 -11.53601 -11.45688 -11.14116 -10.87810 -10.79700 -10.56526 -9.62632 -9.52334 -9.36582 -8.34848 -6.44615 0.62315 0.69752 1.30331 1.39786 1.48968 1.72427 2.00249 2.30886 2.54737 2.96295 3.11608 3.18987 3.63596 3.75639 3.84345 3.96679 4.04862 4.10721 4.17165 4.20403 4.23289 4.29011 4.35600 4.41121 4.45289 4.48591 4.54915 4.56332 4.61621 4.70232 4.74534 4.81865 4.87330 4.89635 4.90540 4.97717 5.14254 5.18684 5.27475 5.32169 5.38298 5.50508 5.69341 5.74696 5.95209 6.15989 6.16848 6.27657 6.39543 6.58324 6.92777 7.19422 7.26741 8.80070 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012094 B = 0.005202 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.677005 B = 5380.836999 C = 6725.427794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.099 3.901 3 C -0.126 4.126 4 C 0.088 3.912 5 N -0.612 5.612 6 C 0.536 3.464 7 O -0.581 6.581 8 C 0.040 3.960 9 H 0.074 0.926 10 C -0.498 4.498 11 H 0.022 0.978 12 C 0.035 3.965 13 N -0.933 5.933 14 Si 0.909 3.091 15 H -0.244 1.244 16 H -0.292 1.292 17 H -0.221 1.221 18 C -0.068 4.068 19 C -0.096 4.096 20 C -0.139 4.139 21 C -0.133 4.133 22 C -0.127 4.127 23 C -0.143 4.143 24 C 0.083 3.917 25 C 0.077 3.923 26 H 0.043 0.957 27 C 0.091 3.909 28 O -0.586 6.586 29 O -0.364 6.364 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.270 0.730 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.128 0.872 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.590 3.956 0.883 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.059 3.941 3 C -0.183 4.183 4 C -0.034 4.034 5 N -0.345 5.345 6 C 0.327 3.673 7 O -0.461 6.461 8 C 0.019 3.981 9 H 0.091 0.909 10 C -0.536 4.536 11 H 0.040 0.960 12 C -0.165 4.165 13 N -0.570 5.570 14 Si 0.730 3.270 15 H -0.168 1.168 16 H -0.219 1.219 17 H -0.143 1.143 18 C -0.069 4.069 19 C -0.115 4.115 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.145 4.145 23 C -0.161 4.161 24 C -0.040 4.040 25 C 0.019 3.981 26 H 0.061 0.939 27 C 0.013 3.987 28 O -0.394 6.394 29 O -0.283 6.283 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.148 0.852 41 H 0.167 0.833 42 H 0.168 0.832 43 H 0.146 0.854 44 H 0.111 0.889 45 H 0.121 0.879 46 H 0.088 0.912 47 H 0.100 0.900 48 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 13.166 4.593 0.128 13.945 hybrid contribution -0.733 -1.006 0.677 1.417 sum 12.434 3.587 0.805 12.966 Atomic orbital electron populations 1.22306 0.96586 1.01252 1.02618 1.21998 0.92852 0.94489 0.84735 1.21691 1.02590 0.90403 1.03633 1.22391 1.01366 0.80521 0.99126 1.48012 1.59429 1.10884 1.16193 1.21120 0.74219 0.90397 0.81545 1.90545 1.54825 1.69917 1.30763 1.18283 0.98004 0.89182 0.92648 0.90869 1.20278 0.98919 1.06487 1.27908 0.95955 1.25754 0.97607 0.99386 0.93723 1.70016 1.25675 1.30161 1.31164 0.86314 0.80688 0.78165 0.81812 1.16757 1.21865 1.14319 1.20164 0.94622 0.96853 0.95217 1.20830 0.97315 0.98760 0.94564 1.21344 1.00398 0.98284 0.95667 1.21355 0.94867 0.98045 1.00809 1.21371 0.99152 1.00460 0.93527 1.21316 0.99115 0.98139 0.97497 1.22400 1.01901 0.96979 0.82760 1.22382 0.98248 0.83070 0.94448 0.93913 1.22068 0.98189 0.94533 0.83918 1.86486 1.73046 1.62122 1.17759 1.87965 1.71775 1.24924 1.43667 0.91421 0.91326 0.95061 0.90273 0.89508 0.91120 0.88949 0.89694 0.92112 0.89822 0.85183 0.83254 0.83202 0.85417 0.88943 0.87854 0.91151 0.90022 0.75114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.78 8.09 71.98 0.58 -5.20 16 2 C 0.10 2.93 1.11 -10.69 -0.01 2.91 16 3 C -0.13 -2.68 8.85 71.98 0.64 -2.04 16 4 C 0.09 2.78 5.31 86.35 0.46 3.24 16 5 N -0.61 -22.88 2.54 -817.36 -2.07 -24.96 16 6 C 0.54 24.09 6.80 87.66 0.60 24.69 16 7 O -0.58 -28.88 14.74 -3.04 -0.04 -28.93 16 8 C 0.04 1.84 1.01 -13.03 -0.01 1.83 16 9 H 0.07 3.03 3.90 -2.39 -0.01 3.02 16 10 C -0.50 -27.01 7.56 25.60 0.19 -26.82 16 11 H 0.02 1.42 8.06 -2.91 -0.02 1.40 16 12 C 0.04 1.90 5.47 84.65 0.46 2.36 16 13 N -0.93 -54.99 13.96 21.45 0.30 -54.69 16 14 Si 0.91 38.31 26.55 68.60 1.82 40.13 16 15 H -0.24 -9.08 7.11 99.48 0.71 -8.37 16 16 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.22 -8.37 4.37 99.48 0.43 -7.94 16 18 C -0.07 -3.01 4.20 -19.86 -0.08 -3.09 16 19 C -0.10 -4.40 8.07 22.27 0.18 -4.22 16 20 C -0.14 -5.17 10.05 22.27 0.22 -4.94 16 21 C -0.13 -4.15 10.05 22.27 0.22 -3.93 16 22 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 23 C -0.14 -5.32 8.45 22.27 0.19 -5.13 16 24 C 0.08 2.71 5.66 86.35 0.49 3.20 16 25 C 0.08 2.55 2.67 30.69 0.08 2.63 16 26 H 0.04 1.76 6.25 -2.39 -0.01 1.75 16 27 C 0.09 2.35 6.71 71.98 0.48 2.83 16 28 O -0.59 -15.64 13.63 -144.70 -1.97 -17.61 16 29 O -0.36 -11.43 9.84 -144.70 -1.42 -12.85 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.03 1.30 6.11 -2.39 -0.01 1.29 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 37 H 0.08 2.90 7.08 -2.39 -0.02 2.88 16 38 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 39 H 0.08 4.32 7.71 -2.91 -0.02 4.30 16 40 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 41 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 42 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.13 4.21 7.13 -2.91 -0.02 4.19 16 44 H 0.09 3.37 5.02 -2.39 -0.01 3.36 16 45 H 0.10 2.63 8.14 -2.38 -0.02 2.62 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.40 6.10 9.12 -74.06 -0.68 5.42 16 Total: -1.00 -74.48 376.07 1.55 -72.93 By element: Atomic # 1 Polarization: 41.40 SS G_CDS: 0.02 Total: 41.42 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 4.92 Total: -15.45 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -1.77 Total: -79.65 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -3.44 Total: -59.40 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 1.82 Total: 40.13 kcal Total: -74.48 1.55 -72.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413159217.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.485 kcal (2) G-P(sol) polarization free energy of solvation -74.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds