Wall clock time and date at job start Tue Mar 31 2020 18:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.55225 * 2 1 4 4 C 1.53710 * 109.66094 * 239.86714 * 2 1 3 5 5 N 1.47158 * 108.16109 * 292.57182 * 4 2 1 6 6 C 1.34777 * 120.97939 * 129.42648 * 5 4 2 7 7 O 1.21278 * 120.00186 * 359.72496 * 6 5 4 8 8 C 1.50701 * 119.99776 * 179.71875 * 6 5 4 9 9 H 1.09000 * 109.47394 * 60.00103 * 8 6 5 10 10 C 1.50704 * 109.47192 * 300.00376 * 8 6 5 11 11 H 1.07999 * 120.00388 * 125.76177 * 10 8 6 12 12 C 1.37886 * 119.99819 * 305.76637 * 10 8 6 13 13 N 1.31505 * 120.00114 * 5.08474 * 12 10 8 14 14 Si 1.86803 * 119.99727 * 185.09148 * 12 10 8 15 15 H 1.48497 * 109.47155 * 59.99739 * 14 12 10 16 16 H 1.48499 * 109.46850 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46978 * 299.99263 * 14 12 10 18 18 C 1.50701 * 109.47266 * 180.02562 * 8 6 5 19 19 C 1.38233 * 119.99660 * 295.06872 * 18 8 6 20 20 C 1.38231 * 120.00000 * 179.72174 * 19 18 8 21 21 C 1.38235 * 119.99909 * 0.26152 * 20 19 18 22 22 C 1.38240 * 120.00013 * 0.02562 * 21 20 19 23 23 C 1.38231 * 119.99715 * 359.97438 * 22 21 20 24 24 C 1.47145 * 118.03359 * 309.15694 * 5 4 2 25 25 C 1.53295 * 108.38822 * 50.78862 * 24 5 4 26 26 H 1.09001 * 109.51230 * 67.61522 * 25 24 5 27 27 C 1.52995 * 109.51326 * 187.77246 * 25 24 5 28 28 O 1.42900 * 109.47047 * 184.99575 * 27 25 24 29 29 O 1.42960 * 109.51254 * 120.12445 * 2 1 3 30 30 H 1.08997 * 109.47311 * 299.87659 * 1 2 3 31 31 H 1.08996 * 109.47248 * 59.87800 * 1 2 3 32 32 H 1.08998 * 109.46992 * 179.87451 * 1 2 3 33 33 H 1.09004 * 109.47289 * 180.12845 * 3 2 1 34 34 H 1.09003 * 109.47555 * 300.12280 * 3 2 1 35 35 H 1.08998 * 109.47791 * 60.12507 * 3 2 1 36 36 H 1.09001 * 109.84230 * 172.89059 * 4 2 1 37 37 H 1.08998 * 109.74488 * 52.19640 * 4 2 1 38 38 H 0.97002 * 120.00066 * 180.02562 * 13 12 10 39 39 H 1.08000 * 120.00015 * 0.02562 * 19 18 8 40 40 H 1.07998 * 120.00456 * 180.27497 * 20 19 18 41 41 H 1.08005 * 120.00273 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.99894 * 179.97438 * 22 21 20 43 43 H 1.08006 * 119.99418 * 179.97438 * 23 22 21 44 44 H 1.09003 * 109.68072 * 170.50913 * 24 5 4 45 45 H 1.08999 * 109.68383 * 291.06105 * 24 5 4 46 46 H 1.08996 * 109.47597 * 304.99815 * 27 25 24 47 47 H 1.08999 * 109.47447 * 65.00093 * 27 25 24 48 48 H 0.96699 * 114.00109 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0420 1.4417 0.0000 4 6 2.0471 -0.7266 -1.2519 5 7 1.6960 -2.1508 -1.1334 6 6 1.0717 -2.7972 -2.1378 7 8 0.7864 -2.2037 -3.1563 8 6 0.7281 -4.2576 -1.9954 9 1 0.0638 -4.3931 -1.1419 10 6 1.9905 -5.0520 -1.7802 11 1 2.0776 -5.7067 -0.9257 12 6 3.0345 -4.9430 -2.6743 13 7 2.9695 -4.0728 -3.6581 14 14 4.5412 -6.0315 -2.4882 15 1 4.1364 -7.4572 -2.5814 16 1 5.5122 -5.7214 -3.5681 17 1 5.1724 -5.7813 -1.1675 18 6 0.0411 -4.7366 -3.2482 19 6 -1.1943 -4.2243 -3.5980 20 6 -1.8218 -4.6594 -4.7502 21 6 -1.2165 -5.6108 -5.5498 22 6 0.0162 -6.1274 -5.1969 23 6 0.6437 -5.6923 -4.0447 24 6 2.0522 -2.8497 0.1115 25 6 1.5396 -2.0210 1.2949 26 1 0.4496 -2.0283 1.2995 27 6 2.0614 -2.6201 2.6024 28 8 1.4903 -1.9189 3.7089 29 8 2.0075 -0.6763 1.1655 30 1 -0.3634 0.5119 0.8911 31 1 -0.3633 0.5157 -0.8888 32 1 -0.3633 -1.0276 -0.0023 33 1 3.1320 1.4402 -0.0023 34 1 1.6776 1.9568 -0.8889 35 1 1.6813 1.9555 0.8911 36 1 3.1297 -0.6200 -1.3209 37 1 1.5789 -0.3059 -2.1417 38 1 3.7038 -3.9963 -4.2874 39 1 -1.6668 -3.4806 -2.9736 40 1 -2.7850 -4.2560 -5.0259 41 1 -1.7071 -5.9511 -6.4499 42 1 0.4889 -6.8710 -5.8215 43 1 1.6066 -6.0963 -3.7688 44 1 1.5873 -3.8355 0.1250 45 1 3.1353 -2.9531 0.1775 46 1 1.7830 -3.6725 2.6565 47 1 3.1470 -2.5292 2.6360 48 1 1.7772 -2.2463 4.5724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413159813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:26 Heat of formation + Delta-G solvation = -92.344400 kcal Electronic energy + Delta-G solvation = -31045.761541 eV Core-core repulsion = 27066.155275 eV Total energy + Delta-G solvation = -3979.606266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.04508 -38.59735 -37.22771 -36.58236 -34.10141 -33.61709 -33.34039 -30.93615 -29.69644 -29.67093 -27.80580 -27.22406 -25.83511 -24.97392 -23.64659 -21.59479 -21.28718 -20.58097 -19.38399 -18.35971 -17.23128 -17.11178 -16.43615 -15.83892 -15.56006 -15.10842 -15.02182 -14.56984 -14.46556 -14.27365 -14.03803 -13.75575 -13.47740 -13.13625 -12.83213 -12.76542 -12.44302 -12.26832 -12.22267 -12.05494 -11.94298 -11.62291 -11.54335 -11.44117 -11.28356 -10.98667 -10.94569 -10.82899 -10.80014 -10.41878 -10.12406 -10.10807 -9.90977 -9.78096 -9.51714 -9.39865 -8.69088 -8.32891 -7.80675 -7.56920 -7.44429 -6.22913 -4.36596 2.45382 2.55503 3.14582 3.22889 3.24105 3.77218 3.88501 4.08649 4.23857 4.43161 4.94575 5.00104 5.03045 5.13422 5.19850 5.28542 5.35235 5.49780 5.57027 5.76148 5.79571 5.81059 5.86402 5.88685 5.91750 5.97020 5.98937 6.02969 6.21540 6.27235 6.27726 6.34281 6.43450 6.51532 6.55840 6.58717 6.71909 6.80358 7.04205 7.17339 7.42562 7.47087 7.53589 7.56374 7.63800 7.66619 7.73582 8.09196 8.20342 8.48161 8.69274 9.26781 9.64858 10.78000 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011754 B = 0.004968 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.657774 B = 5634.269533 C = 6623.864951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 C -0.133 4.133 4 C 0.098 3.902 5 N -0.612 5.612 6 C 0.563 3.437 7 O -0.545 6.545 8 C 0.057 3.943 9 H 0.053 0.947 10 C -0.539 4.539 11 H 0.069 0.931 12 C 0.073 3.927 13 N -0.842 5.842 14 Si 0.884 3.116 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.018 4.018 19 C -0.114 4.114 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.148 4.148 23 C -0.059 4.059 24 C 0.102 3.898 25 C 0.071 3.929 26 H 0.068 0.932 27 C 0.087 3.913 28 O -0.567 6.567 29 O -0.366 6.366 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.268 0.732 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.136 0.864 44 H 0.111 0.889 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.457 2.895 8.815 9.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.059 3.941 3 C -0.190 4.190 4 C -0.026 4.026 5 N -0.347 5.347 6 C 0.355 3.645 7 O -0.420 6.420 8 C 0.036 3.964 9 H 0.071 0.929 10 C -0.577 4.577 11 H 0.087 0.913 12 C -0.135 4.135 13 N -0.475 5.475 14 Si 0.711 3.289 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.019 4.019 19 C -0.132 4.132 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.166 4.166 23 C -0.077 4.077 24 C -0.022 4.022 25 C 0.012 3.988 26 H 0.085 0.915 27 C 0.008 3.992 28 O -0.372 6.372 29 O -0.286 6.286 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.154 0.846 44 H 0.129 0.871 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.682 3.715 7.673 8.937 hybrid contribution 1.284 -0.949 0.098 1.600 sum -1.398 2.766 7.771 8.366 Atomic orbital electron populations 1.22289 0.95602 1.02762 1.02004 1.21955 0.93499 0.92670 0.85972 1.21680 1.01805 0.93287 1.02277 1.22066 0.99751 0.82997 0.97783 1.47743 1.61328 1.08867 1.16778 1.20919 0.74130 0.88664 0.80822 1.90524 1.54690 1.68797 1.28031 1.17917 0.96255 0.89843 0.92397 0.92860 1.20672 0.98257 1.27388 1.11385 0.91326 1.25029 0.98200 0.95140 0.95121 1.70044 1.31906 1.31435 1.14128 0.86763 0.82724 0.81310 0.78097 1.19756 1.21155 1.19930 1.19827 0.91816 0.93693 0.96592 1.20873 0.96140 0.99130 0.97104 1.20776 0.99674 0.99343 0.96234 1.20801 0.96530 0.99333 0.99428 1.21073 0.95858 1.01408 0.98293 1.21415 0.99020 0.95127 0.92095 1.22126 1.00980 0.96674 0.82437 1.22649 0.99001 0.83464 0.93699 0.91451 1.22118 0.97358 0.94481 0.85212 1.86538 1.72332 1.61908 1.16425 1.87950 1.72185 1.25067 1.43378 0.92259 0.91716 0.91967 0.91888 0.91109 0.91882 0.92292 0.88979 0.92196 0.88134 0.87970 0.88073 0.87958 0.84600 0.87063 0.91769 0.91760 0.92739 0.77894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 8.10 37.16 0.30 -2.25 16 2 C 0.10 1.56 1.12 -90.25 -0.10 1.46 16 3 C -0.13 -1.71 8.85 37.16 0.33 -1.38 16 4 C 0.10 1.82 5.34 -3.31 -0.02 1.80 16 5 N -0.61 -12.47 2.53 -172.02 -0.43 -12.90 16 6 C 0.56 13.24 5.32 -10.98 -0.06 13.18 16 7 O -0.54 -14.56 14.62 5.56 0.08 -14.48 16 8 C 0.06 1.31 1.89 -94.07 -0.18 1.13 16 9 H 0.05 1.12 7.66 -51.93 -0.40 0.73 16 10 C -0.54 -12.53 5.51 -34.43 -0.19 -12.72 16 11 H 0.07 1.52 7.73 -52.49 -0.41 1.11 16 12 C 0.07 1.76 3.19 -17.82 -0.06 1.70 16 13 N -0.84 -22.27 10.43 55.43 0.58 -21.69 16 14 Si 0.88 19.10 29.54 -169.99 -5.02 14.08 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 16 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 C -0.02 -0.43 4.50 -104.63 -0.47 -0.90 16 19 C -0.11 -2.49 8.73 -39.59 -0.35 -2.84 16 20 C -0.14 -2.82 10.05 -39.59 -0.40 -3.22 16 21 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 22 C -0.15 -3.09 10.05 -39.58 -0.40 -3.49 16 23 C -0.06 -1.37 8.00 -39.59 -0.32 -1.69 16 24 C 0.10 1.81 5.01 -3.54 -0.02 1.79 16 25 C 0.07 1.10 2.67 -26.58 -0.07 1.03 16 26 H 0.07 1.09 6.25 -51.93 -0.32 0.76 16 27 C 0.09 1.10 6.71 37.16 0.25 1.34 16 28 O -0.57 -7.11 13.63 -39.71 -0.54 -7.65 16 29 O -0.37 -6.11 9.84 -39.71 -0.39 -6.50 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.02 6.11 -51.93 -0.32 0.70 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.83 7.08 -51.93 -0.37 1.46 16 38 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 40 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 43 H 0.14 3.34 4.99 -52.48 -0.26 3.08 16 44 H 0.11 1.98 5.11 -51.93 -0.27 1.71 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.37 2.73 9.12 45.56 0.42 3.14 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -30.74 374.85 -8.77 -39.51 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -6.56 Total: 12.21 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -2.14 Total: -8.22 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.14 Total: -34.59 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.85 Total: -28.63 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.74 -8.77 -39.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413159813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.833 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds