Wall clock time and date at job start Tue Mar 31 2020 18:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.55225 * 2 1 4 4 C 1.53710 * 109.66094 * 239.86714 * 2 1 3 5 5 N 1.47158 * 108.16109 * 292.57182 * 4 2 1 6 6 C 1.34777 * 120.97939 * 129.42648 * 5 4 2 7 7 O 1.21278 * 120.00186 * 359.72496 * 6 5 4 8 8 C 1.50701 * 119.99776 * 179.71875 * 6 5 4 9 9 H 1.09000 * 109.47394 * 60.00103 * 8 6 5 10 10 C 1.50704 * 109.47192 * 300.00376 * 8 6 5 11 11 H 1.07999 * 120.00388 * 125.76177 * 10 8 6 12 12 C 1.37886 * 119.99819 * 305.76637 * 10 8 6 13 13 N 1.31505 * 120.00114 * 5.08474 * 12 10 8 14 14 Si 1.86803 * 119.99727 * 185.09148 * 12 10 8 15 15 H 1.48497 * 109.47155 * 59.99739 * 14 12 10 16 16 H 1.48499 * 109.46850 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46978 * 299.99263 * 14 12 10 18 18 C 1.50701 * 109.47266 * 180.02562 * 8 6 5 19 19 C 1.38233 * 119.99660 * 295.06872 * 18 8 6 20 20 C 1.38231 * 120.00000 * 179.72174 * 19 18 8 21 21 C 1.38235 * 119.99909 * 0.26152 * 20 19 18 22 22 C 1.38240 * 120.00013 * 0.02562 * 21 20 19 23 23 C 1.38231 * 119.99715 * 359.97438 * 22 21 20 24 24 C 1.47145 * 118.03359 * 309.15694 * 5 4 2 25 25 C 1.53295 * 108.38822 * 50.78862 * 24 5 4 26 26 H 1.09001 * 109.51230 * 67.61522 * 25 24 5 27 27 C 1.52995 * 109.51326 * 187.77246 * 25 24 5 28 28 O 1.42900 * 109.47047 * 184.99575 * 27 25 24 29 29 O 1.42960 * 109.51254 * 120.12445 * 2 1 3 30 30 H 1.08997 * 109.47311 * 299.87659 * 1 2 3 31 31 H 1.08996 * 109.47248 * 59.87800 * 1 2 3 32 32 H 1.08998 * 109.46992 * 179.87451 * 1 2 3 33 33 H 1.09004 * 109.47289 * 180.12845 * 3 2 1 34 34 H 1.09003 * 109.47555 * 300.12280 * 3 2 1 35 35 H 1.08998 * 109.47791 * 60.12507 * 3 2 1 36 36 H 1.09001 * 109.84230 * 172.89059 * 4 2 1 37 37 H 1.08998 * 109.74488 * 52.19640 * 4 2 1 38 38 H 0.97002 * 120.00066 * 180.02562 * 13 12 10 39 39 H 1.08000 * 120.00015 * 0.02562 * 19 18 8 40 40 H 1.07998 * 120.00456 * 180.27497 * 20 19 18 41 41 H 1.08005 * 120.00273 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.99894 * 179.97438 * 22 21 20 43 43 H 1.08006 * 119.99418 * 179.97438 * 23 22 21 44 44 H 1.09003 * 109.68072 * 170.50913 * 24 5 4 45 45 H 1.08999 * 109.68383 * 291.06105 * 24 5 4 46 46 H 1.08996 * 109.47597 * 304.99815 * 27 25 24 47 47 H 1.08999 * 109.47447 * 65.00093 * 27 25 24 48 48 H 0.96699 * 114.00109 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0420 1.4417 0.0000 4 6 2.0471 -0.7266 -1.2519 5 7 1.6960 -2.1508 -1.1334 6 6 1.0717 -2.7972 -2.1378 7 8 0.7864 -2.2037 -3.1563 8 6 0.7281 -4.2576 -1.9954 9 1 0.0638 -4.3931 -1.1419 10 6 1.9905 -5.0520 -1.7802 11 1 2.0776 -5.7067 -0.9257 12 6 3.0345 -4.9430 -2.6743 13 7 2.9695 -4.0728 -3.6581 14 14 4.5412 -6.0315 -2.4882 15 1 4.1364 -7.4572 -2.5814 16 1 5.5122 -5.7214 -3.5681 17 1 5.1724 -5.7813 -1.1675 18 6 0.0411 -4.7366 -3.2482 19 6 -1.1943 -4.2243 -3.5980 20 6 -1.8218 -4.6594 -4.7502 21 6 -1.2165 -5.6108 -5.5498 22 6 0.0162 -6.1274 -5.1969 23 6 0.6437 -5.6923 -4.0447 24 6 2.0522 -2.8497 0.1115 25 6 1.5396 -2.0210 1.2949 26 1 0.4496 -2.0283 1.2995 27 6 2.0614 -2.6201 2.6024 28 8 1.4903 -1.9189 3.7089 29 8 2.0075 -0.6763 1.1655 30 1 -0.3634 0.5119 0.8911 31 1 -0.3633 0.5157 -0.8888 32 1 -0.3633 -1.0276 -0.0023 33 1 3.1320 1.4402 -0.0023 34 1 1.6776 1.9568 -0.8889 35 1 1.6813 1.9555 0.8911 36 1 3.1297 -0.6200 -1.3209 37 1 1.5789 -0.3059 -2.1417 38 1 3.7038 -3.9963 -4.2874 39 1 -1.6668 -3.4806 -2.9736 40 1 -2.7850 -4.2560 -5.0259 41 1 -1.7071 -5.9511 -6.4499 42 1 0.4889 -6.8710 -5.8215 43 1 1.6066 -6.0963 -3.7688 44 1 1.5873 -3.8355 0.1250 45 1 3.1353 -2.9531 0.1775 46 1 1.7830 -3.6725 2.6565 47 1 3.1470 -2.5292 2.6360 48 1 1.7772 -2.2463 4.5724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413159813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:25 Heat of formation + Delta-G solvation = -112.063425 kcal Electronic energy + Delta-G solvation = -31046.616622 eV Core-core repulsion = 27066.155275 eV Total energy + Delta-G solvation = -3980.461347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.52834 -40.18678 -38.84713 -37.61674 -35.81789 -35.24255 -34.64837 -32.69574 -31.34268 -30.94574 -29.46615 -28.37874 -27.32187 -26.45812 -25.34257 -22.96849 -22.77450 -22.19414 -20.81604 -19.93288 -18.86165 -18.27042 -17.74513 -17.41199 -17.24714 -16.82692 -16.46578 -16.06971 -15.77443 -15.63808 -15.56619 -15.35410 -14.85006 -14.58589 -14.31963 -14.20901 -14.07629 -13.85856 -13.61301 -13.45203 -13.16709 -13.05506 -12.96589 -12.80178 -12.78155 -12.65376 -12.59719 -12.25160 -12.17030 -12.01539 -11.81119 -11.47759 -11.37190 -11.20120 -10.99041 -10.78388 -10.55559 -10.16719 -9.45708 -9.18997 -9.11409 -8.10551 -6.26749 0.80761 0.90886 1.41604 1.45354 1.50175 2.23330 2.34914 2.49724 2.65503 3.16180 3.25223 3.33851 3.72524 3.90585 3.96315 4.07276 4.19655 4.27561 4.32893 4.33596 4.40957 4.45784 4.49640 4.55160 4.63677 4.68757 4.72426 4.74618 4.79716 4.82577 4.90316 4.95940 4.99853 5.04007 5.07593 5.13351 5.17978 5.30572 5.39964 5.53586 5.67365 5.82600 5.86550 5.93593 5.96012 6.27004 6.38262 6.49378 6.70285 6.91836 6.98288 7.38732 7.86398 8.89178 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011754 B = 0.004968 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.657774 B = 5634.269533 C = 6623.864951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.102 3.898 3 C -0.128 4.128 4 C 0.097 3.903 5 N -0.614 5.614 6 C 0.562 3.438 7 O -0.586 6.586 8 C 0.051 3.949 9 H 0.063 0.937 10 C -0.530 4.530 11 H 0.078 0.922 12 C 0.040 3.960 13 N -0.876 5.876 14 Si 0.935 3.065 15 H -0.266 1.266 16 H -0.299 1.299 17 H -0.264 1.264 18 C -0.043 4.043 19 C -0.130 4.130 20 C -0.141 4.141 21 C -0.139 4.139 22 C -0.156 4.156 23 C -0.084 4.084 24 C 0.103 3.897 25 C 0.074 3.926 26 H 0.062 0.938 27 C 0.092 3.908 28 O -0.584 6.584 29 O -0.373 6.373 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.257 0.743 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.109 0.891 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.060 0.940 48 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 2.634 9.959 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.062 3.938 3 C -0.186 4.186 4 C -0.026 4.026 5 N -0.347 5.347 6 C 0.354 3.646 7 O -0.465 6.465 8 C 0.030 3.970 9 H 0.081 0.919 10 C -0.568 4.568 11 H 0.096 0.904 12 C -0.164 4.164 13 N -0.510 5.510 14 Si 0.761 3.239 15 H -0.191 1.191 16 H -0.226 1.226 17 H -0.189 1.189 18 C -0.043 4.043 19 C -0.149 4.149 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.174 4.174 23 C -0.102 4.102 24 C -0.020 4.020 25 C 0.015 3.985 26 H 0.080 0.920 27 C 0.013 3.987 28 O -0.393 6.393 29 O -0.292 6.292 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.120 0.880 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.127 0.873 45 H 0.076 0.924 46 H 0.104 0.896 47 H 0.078 0.922 48 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.290 3.436 8.898 10.090 hybrid contribution 1.422 -0.881 -0.242 1.690 sum -1.868 2.556 8.655 9.216 Atomic orbital electron populations 1.22232 0.95032 1.01852 1.02916 1.22013 0.93908 0.93678 0.84196 1.21690 1.01921 0.91341 1.03636 1.22155 0.99152 0.82410 0.98930 1.47788 1.60255 1.09683 1.17003 1.21000 0.74035 0.88837 0.80716 1.90481 1.56650 1.69613 1.29781 1.18000 0.96432 0.89580 0.92994 0.91859 1.20884 0.98128 1.26667 1.11075 0.90361 1.25530 1.00294 0.95800 0.94783 1.70215 1.32096 1.33515 1.15219 0.85955 0.79948 0.80177 0.77824 1.19129 1.22571 1.18876 1.19966 0.92769 0.94434 0.97173 1.21028 0.96017 0.99510 0.98311 1.21183 1.00755 0.98828 0.95169 1.21213 0.95803 0.98363 1.00327 1.21372 0.96587 1.01760 0.97646 1.21375 0.98844 0.96271 0.93704 1.22183 1.00534 0.97004 0.82285 1.22645 0.98717 0.82788 0.94355 0.91960 1.22048 0.97470 0.95177 0.83960 1.86464 1.72652 1.62454 1.17687 1.87961 1.72446 1.25486 1.43328 0.90609 0.91446 0.93784 0.91755 0.89825 0.90426 0.93093 0.90782 0.93410 0.88035 0.84735 0.84279 0.85901 0.86495 0.87268 0.92418 0.89576 0.92179 0.75158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.80 8.10 71.98 0.58 -4.21 16 2 C 0.10 3.14 1.12 -10.56 -0.01 3.13 16 3 C -0.13 -3.12 8.85 71.98 0.64 -2.48 16 4 C 0.10 3.70 5.34 86.49 0.46 4.16 16 5 N -0.61 -25.57 2.53 -816.55 -2.06 -27.64 16 6 C 0.56 27.23 5.32 87.66 0.47 27.69 16 7 O -0.59 -32.55 14.62 -3.02 -0.04 -32.60 16 8 C 0.05 2.39 1.89 -13.03 -0.02 2.36 16 9 H 0.06 2.72 7.66 -2.39 -0.02 2.70 16 10 C -0.53 -24.85 5.51 25.60 0.14 -24.71 16 11 H 0.08 3.44 7.73 -2.91 -0.02 3.41 16 12 C 0.04 1.96 3.19 84.66 0.27 2.23 16 13 N -0.88 -47.82 10.43 21.45 0.22 -47.59 16 14 Si 0.94 39.54 29.54 68.60 2.03 41.57 16 15 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 16 H -0.30 -13.24 7.11 99.48 0.71 -12.54 16 17 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 18 C -0.04 -2.03 4.50 -19.87 -0.09 -2.12 16 19 C -0.13 -5.70 8.73 22.27 0.19 -5.51 16 20 C -0.14 -5.37 10.05 22.27 0.22 -5.14 16 21 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 22 C -0.16 -6.36 10.05 22.27 0.22 -6.14 16 23 C -0.08 -3.98 8.00 22.27 0.18 -3.80 16 24 C 0.10 3.66 5.01 86.36 0.43 4.10 16 25 C 0.07 2.22 2.67 30.69 0.08 2.31 16 26 H 0.06 1.96 6.25 -2.39 -0.01 1.95 16 27 C 0.09 2.13 6.71 71.98 0.48 2.61 16 28 O -0.58 -13.16 13.63 -144.70 -1.97 -15.13 16 29 O -0.37 -12.00 9.84 -144.70 -1.42 -13.42 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.44 6.11 -2.39 -0.01 1.43 16 33 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.07 3.07 7.08 -2.39 -0.02 3.06 16 38 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 41 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 42 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 43 H 0.12 5.89 4.99 -2.91 -0.01 5.88 16 44 H 0.11 3.87 5.11 -2.39 -0.01 3.86 16 45 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.40 4.66 9.12 -74.06 -0.68 3.98 16 Total: -1.00 -67.37 374.85 1.52 -65.86 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: 0.29 Total: 39.35 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 4.48 Total: -10.40 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -1.84 Total: -75.23 kcal Atomic # 8 Polarization: -57.71 SS G_CDS: -3.44 Total: -61.15 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -67.37 1.52 -65.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413159813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.208 kcal (2) G-P(sol) polarization free energy of solvation -67.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds