Wall clock time and date at job start Tue Mar 31 2020 18:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47333 * 2 1 4 4 N 1.30837 * 125.95754 * 305.02804 * 3 2 1 5 5 C 1.33245 * 109.82533 * 179.97438 * 4 3 2 6 6 C 1.50704 * 125.52463 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47077 * 89.99782 * 6 5 4 8 8 C 1.34773 * 120.00026 * 180.02562 * 7 6 5 9 9 O 1.21595 * 119.99822 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00158 * 179.97438 * 8 7 6 11 11 C 1.40196 * 120.00000 * 180.02562 * 10 8 7 12 12 C 1.40396 * 125.97439 * 0.27024 * 11 10 8 13 13 C 1.35244 * 107.86945 * 180.17767 * 12 11 10 14 14 C 1.50703 * 126.07226 * 179.88542 * 13 12 11 15 15 N 1.34968 * 107.85703 * 359.61998 * 13 12 11 16 16 C 1.46496 * 125.97396 * 180.24284 * 15 13 12 17 17 C 1.50702 * 109.47079 * 90.00325 * 16 15 13 18 18 H 1.08002 * 120.00024 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00327 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99450 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00465 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46776 * 59.99591 * 21 19 17 23 23 H 1.48491 * 109.47249 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46668 * 299.99903 * 21 19 17 25 25 N 1.31217 * 125.97157 * 180.02562 * 11 10 8 26 26 N 1.30705 * 108.94632 * 0.25911 * 5 4 3 27 27 N 1.34422 * 125.96319 * 125.00204 * 3 2 1 28 28 H 0.97003 * 126.82063 * 0.02562 * 27 3 2 29 29 H 1.09000 * 109.46786 * 300.00557 * 1 2 3 30 30 H 1.09005 * 109.46989 * 59.99856 * 1 2 3 31 31 H 1.08990 * 109.47352 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47049 * 240.00367 * 2 1 3 33 33 H 1.08992 * 109.47125 * 120.00012 * 2 1 3 34 34 H 1.08998 * 109.46710 * 329.99876 * 6 5 4 35 35 H 1.08998 * 109.46948 * 209.99841 * 6 5 4 36 36 H 0.97004 * 120.00070 * 359.97438 * 7 6 5 37 37 H 0.97004 * 119.99938 * 0.02562 * 10 8 7 38 38 H 1.08001 * 126.06931 * 0.03580 * 12 11 10 39 39 H 1.09002 * 109.47152 * 269.68666 * 14 13 12 40 40 H 1.09001 * 109.46980 * 149.68766 * 14 13 12 41 41 H 1.09004 * 109.47113 * 29.68747 * 14 13 12 42 42 H 1.08997 * 109.47352 * 209.99655 * 16 15 13 43 43 H 1.09001 * 109.47699 * 330.00018 * 16 15 13 44 44 H 0.97001 * 120.00075 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7154 2.3478 -0.8672 5 6 2.3420 3.4839 -0.5637 6 6 2.2296 4.7773 -1.3289 7 7 1.1267 5.5728 -0.7839 8 6 0.8373 6.7769 -1.3156 9 8 1.4920 7.2033 -2.2474 10 7 -0.1777 7.5085 -0.8146 11 6 -0.4790 8.7609 -1.3680 12 6 0.1874 9.3690 -2.4437 13 6 -0.3984 10.5666 -2.6712 14 6 -0.0037 11.5601 -3.7334 15 7 -1.4032 10.7115 -1.7817 16 6 -2.3021 11.8636 -1.6790 17 6 -3.5072 11.6402 -2.5560 18 1 -3.5944 10.7311 -3.1326 19 6 -4.4984 12.5964 -2.6224 20 7 -4.3923 13.7031 -1.9199 21 14 -5.9917 12.3199 -3.7099 22 1 -6.7047 11.0940 -3.2694 23 1 -6.9036 13.4871 -3.6048 24 1 -5.5541 12.1583 -5.1198 25 7 -1.4360 9.5675 -0.9741 26 7 3.0739 3.2931 0.5023 27 7 2.8840 1.9570 0.8912 28 1 3.2896 1.5091 1.6500 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0275 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0375 4.5621 -2.3800 35 1 3.1608 5.3361 -1.2367 36 1 0.6042 5.2325 -0.0408 37 1 -0.6997 7.1686 -0.0710 38 1 1.0215 8.9552 -2.9910 39 1 0.7400 12.2472 -3.3299 40 1 -0.8826 12.1213 -4.0507 41 1 0.4171 11.0302 -4.5881 42 1 -2.6231 11.9829 -0.6443 43 1 -1.7787 12.7631 -2.0031 44 1 -5.0898 14.3757 -1.9663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413542592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:03 Heat of formation + Delta-G solvation = 132.263805 kcal Electronic energy + Delta-G solvation = -26953.475650 eV Core-core repulsion = 22944.654286 eV Total energy + Delta-G solvation = -4008.821364 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.70320 -40.69918 -39.54750 -35.74596 -34.72962 -34.41472 -33.35327 -32.89111 -31.38358 -30.85657 -30.52491 -27.64208 -26.40720 -26.19186 -24.86766 -23.08790 -21.93484 -21.43010 -20.87396 -19.85246 -19.54785 -18.49200 -17.72347 -16.64928 -16.61979 -16.10572 -15.74611 -15.43970 -15.15751 -14.89632 -14.66312 -14.45699 -14.25478 -14.00745 -13.47803 -13.28552 -13.08882 -12.91457 -12.55437 -12.42327 -12.25588 -12.15289 -12.05810 -11.72676 -11.61772 -11.35514 -11.05482 -10.78887 -10.69392 -10.52485 -10.41387 -10.21603 -10.09559 -9.92362 -9.60929 -9.50612 -9.25658 -8.60295 -7.85141 -7.34550 -6.21411 -4.28999 1.00770 2.00513 2.10592 2.68396 2.72001 3.14515 3.26461 3.29941 3.34442 3.37856 3.70986 3.89005 3.99904 4.13993 4.30297 4.40236 4.54454 4.64006 4.88885 5.11864 5.23703 5.26588 5.30448 5.41997 5.50113 5.66441 5.74485 5.77665 5.86534 6.00123 6.15546 6.18567 6.27343 6.49346 6.55356 6.62388 6.69966 7.00825 7.09619 7.16781 7.57709 7.58169 7.71428 7.93439 7.97515 8.13226 8.61286 8.72917 8.80943 9.37094 10.85597 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.001949 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.469776 B =14360.505968 C =15231.041121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C 0.286 3.714 4 N -0.522 5.522 5 C 0.214 3.786 6 C 0.239 3.761 7 N -0.739 5.739 8 C 0.719 3.281 9 O -0.563 6.563 10 N -0.642 5.642 11 C 0.283 3.717 12 C -0.288 4.288 13 C 0.091 3.909 14 C -0.088 4.088 15 N -0.319 5.319 16 C 0.259 3.741 17 C -0.535 4.535 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.906 3.094 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.274 1.274 25 N -0.324 5.324 26 N -0.294 5.294 27 N -0.480 5.480 28 H 0.441 0.559 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.398 0.602 37 H 0.406 0.594 38 H 0.161 0.839 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.108 -26.014 5.432 30.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C 0.007 3.993 4 N -0.251 5.251 5 C -0.069 4.069 6 C 0.112 3.888 7 N -0.397 5.397 8 C 0.418 3.582 9 O -0.438 6.438 10 N -0.292 5.292 11 C 0.029 3.971 12 C -0.319 4.319 13 C -0.041 4.041 14 C -0.146 4.146 15 N -0.101 5.101 16 C 0.141 3.859 17 C -0.574 4.574 18 H 0.082 0.918 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.199 1.199 25 N -0.155 5.155 26 N -0.124 5.124 27 N -0.198 5.198 28 H 0.287 0.713 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.232 0.768 37 H 0.241 0.759 38 H 0.178 0.822 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.822 -24.611 5.447 28.747 hybrid contribution -0.558 -1.123 0.422 1.323 sum 13.263 -25.734 5.869 29.539 Atomic orbital electron populations 1.21707 0.92442 1.02748 1.03570 1.20207 0.97997 0.85768 1.04482 1.24526 0.90310 0.97618 0.86823 1.70388 1.27700 0.99306 1.27748 1.24175 0.93846 0.95783 0.93093 1.19189 0.90897 0.82689 0.95988 1.44795 1.36994 1.18578 1.39296 1.15446 0.80549 0.79981 0.82249 1.90888 1.52576 1.70717 1.29645 1.41327 1.34141 1.16611 1.37100 1.18642 0.96245 0.86439 0.95748 1.21244 1.09276 0.96431 1.04965 1.21057 0.91313 0.97095 0.94594 1.20372 1.02307 0.96772 0.95199 1.48954 1.24157 1.14326 1.22667 1.19662 0.87449 0.79060 0.99693 1.21305 1.04054 1.04905 1.27141 0.91781 1.24931 0.98382 0.94700 0.95812 1.69913 1.34728 1.08038 1.40337 0.86413 0.81753 0.77771 0.80737 1.20018 1.21012 1.19912 1.77246 1.21676 0.96451 1.20090 1.78094 1.24354 0.93531 1.16388 1.48095 1.36987 1.09067 1.25644 0.71273 0.92461 0.90790 0.91238 0.88046 0.89583 0.88258 0.88759 0.76833 0.75919 0.82158 0.91139 0.89974 0.90616 0.93064 0.92814 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.87 37.16 0.37 -0.19 16 2 C -0.04 -0.14 6.56 -27.88 -0.18 -0.32 16 3 C 0.29 1.95 7.51 -155.70 -1.17 0.78 16 4 N -0.52 -5.17 11.16 -8.16 -0.09 -5.26 16 5 C 0.21 2.21 7.51 -156.85 -1.18 1.03 16 6 C 0.24 2.54 6.30 -5.19 -0.03 2.50 16 7 N -0.74 -8.41 5.55 -66.41 -0.37 -8.78 16 8 C 0.72 11.08 8.53 -86.93 -0.74 10.34 16 9 O -0.56 -10.43 13.47 5.28 0.07 -10.36 16 10 N -0.64 -10.45 5.45 -15.51 -0.08 -10.53 16 11 C 0.28 5.94 8.11 -154.36 -1.25 4.68 16 12 C -0.29 -6.12 9.52 -39.84 -0.38 -6.49 16 13 C 0.09 1.96 6.93 -82.28 -0.57 1.39 16 14 C -0.09 -1.55 9.89 36.01 0.36 -1.19 16 15 N -0.32 -7.72 3.59 -58.33 -0.21 -7.93 16 16 C 0.26 6.75 5.81 -5.20 -0.03 6.72 16 17 C -0.54 -14.92 9.39 -34.44 -0.32 -15.25 16 18 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 19 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16 21 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 25 N -0.32 -7.66 12.59 31.44 0.40 -7.26 16 26 N -0.29 -2.92 12.80 32.42 0.41 -2.50 16 27 N -0.48 -3.09 7.45 32.62 0.24 -2.85 16 28 H 0.44 1.23 8.96 -182.33 -1.63 -0.41 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.40 3.76 8.48 -40.82 -0.35 3.41 16 37 H 0.41 5.37 8.84 -40.82 -0.36 5.01 16 38 H 0.16 3.33 5.91 -52.49 -0.31 3.02 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 44 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -35.78 382.67 -10.60 -46.38 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.22 Total: 5.86 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -5.23 Total: 5.70 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: 1.04 Total: -69.65 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.78 -10.60 -46.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413542592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.642 kcal (2) G-P(sol) polarization free energy of solvation -35.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds