Wall clock time and date at job start Tue Mar 31 2020 18:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47333 * 2 1 4 4 N 1.30837 * 125.95754 * 305.02804 * 3 2 1 5 5 C 1.33245 * 109.82533 * 179.97438 * 4 3 2 6 6 C 1.50704 * 125.52463 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47077 * 89.99782 * 6 5 4 8 8 C 1.34773 * 120.00026 * 180.02562 * 7 6 5 9 9 O 1.21595 * 119.99822 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00158 * 179.97438 * 8 7 6 11 11 C 1.40196 * 120.00000 * 180.02562 * 10 8 7 12 12 C 1.40396 * 125.97439 * 0.27024 * 11 10 8 13 13 C 1.35244 * 107.86945 * 180.17767 * 12 11 10 14 14 C 1.50703 * 126.07226 * 179.88542 * 13 12 11 15 15 N 1.34968 * 107.85703 * 359.61998 * 13 12 11 16 16 C 1.46496 * 125.97396 * 180.24284 * 15 13 12 17 17 C 1.50702 * 109.47079 * 90.00325 * 16 15 13 18 18 H 1.08002 * 120.00024 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00327 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99450 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00465 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46776 * 59.99591 * 21 19 17 23 23 H 1.48491 * 109.47249 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46668 * 299.99903 * 21 19 17 25 25 N 1.31217 * 125.97157 * 180.02562 * 11 10 8 26 26 N 1.30705 * 108.94632 * 0.25911 * 5 4 3 27 27 N 1.34422 * 125.96319 * 125.00204 * 3 2 1 28 28 H 0.97003 * 126.82063 * 0.02562 * 27 3 2 29 29 H 1.09000 * 109.46786 * 300.00557 * 1 2 3 30 30 H 1.09005 * 109.46989 * 59.99856 * 1 2 3 31 31 H 1.08990 * 109.47352 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47049 * 240.00367 * 2 1 3 33 33 H 1.08992 * 109.47125 * 120.00012 * 2 1 3 34 34 H 1.08998 * 109.46710 * 329.99876 * 6 5 4 35 35 H 1.08998 * 109.46948 * 209.99841 * 6 5 4 36 36 H 0.97004 * 120.00070 * 359.97438 * 7 6 5 37 37 H 0.97004 * 119.99938 * 0.02562 * 10 8 7 38 38 H 1.08001 * 126.06931 * 0.03580 * 12 11 10 39 39 H 1.09002 * 109.47152 * 269.68666 * 14 13 12 40 40 H 1.09001 * 109.46980 * 149.68766 * 14 13 12 41 41 H 1.09004 * 109.47113 * 29.68747 * 14 13 12 42 42 H 1.08997 * 109.47352 * 209.99655 * 16 15 13 43 43 H 1.09001 * 109.47699 * 330.00018 * 16 15 13 44 44 H 0.97001 * 120.00075 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7154 2.3478 -0.8672 5 6 2.3420 3.4839 -0.5637 6 6 2.2296 4.7773 -1.3289 7 7 1.1267 5.5728 -0.7839 8 6 0.8373 6.7769 -1.3156 9 8 1.4920 7.2033 -2.2474 10 7 -0.1777 7.5085 -0.8146 11 6 -0.4790 8.7609 -1.3680 12 6 0.1874 9.3690 -2.4437 13 6 -0.3984 10.5666 -2.6712 14 6 -0.0037 11.5601 -3.7334 15 7 -1.4032 10.7115 -1.7817 16 6 -2.3021 11.8636 -1.6790 17 6 -3.5072 11.6402 -2.5560 18 1 -3.5944 10.7311 -3.1326 19 6 -4.4984 12.5964 -2.6224 20 7 -4.3923 13.7031 -1.9199 21 14 -5.9917 12.3199 -3.7099 22 1 -6.7047 11.0940 -3.2694 23 1 -6.9036 13.4871 -3.6048 24 1 -5.5541 12.1583 -5.1198 25 7 -1.4360 9.5675 -0.9741 26 7 3.0739 3.2931 0.5023 27 7 2.8840 1.9570 0.8912 28 1 3.2896 1.5091 1.6500 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0275 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0375 4.5621 -2.3800 35 1 3.1608 5.3361 -1.2367 36 1 0.6042 5.2325 -0.0408 37 1 -0.6997 7.1686 -0.0710 38 1 1.0215 8.9552 -2.9910 39 1 0.7400 12.2472 -3.3299 40 1 -0.8826 12.1213 -4.0507 41 1 0.4171 11.0302 -4.5881 42 1 -2.6231 11.9829 -0.6443 43 1 -1.7787 12.7631 -2.0031 44 1 -5.0898 14.3757 -1.9663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413542592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:02 Heat of formation + Delta-G solvation = 106.928073 kcal Electronic energy + Delta-G solvation = -26954.574290 eV Core-core repulsion = 22944.654286 eV Total energy + Delta-G solvation = -4009.920004 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.33300 -42.29208 -40.93298 -36.78644 -36.11177 -35.30752 -34.96693 -33.67484 -32.92907 -32.56968 -31.27166 -28.91077 -28.00554 -27.77503 -25.25746 -24.98010 -23.14002 -22.26894 -21.57561 -21.26011 -21.10429 -19.32435 -18.87167 -18.72483 -17.84469 -17.27764 -16.91009 -16.81080 -16.27233 -16.09423 -15.81525 -15.70114 -15.43676 -15.09652 -14.62552 -14.39591 -14.16498 -14.11497 -13.77402 -13.74447 -13.55851 -13.51925 -13.12932 -13.00361 -12.81296 -12.65777 -12.47606 -12.22854 -12.10718 -12.01518 -11.59516 -11.35804 -11.34577 -11.19177 -11.12959 -10.71616 -10.65458 -10.34373 -9.54133 -9.06481 -8.30488 -6.48273 0.34979 1.00501 1.06442 1.39434 1.41177 1.49880 1.58341 1.65866 1.68083 2.18104 2.36983 2.38555 2.79560 2.98679 3.14500 3.41801 3.69999 3.88621 4.18415 4.23731 4.32036 4.42057 4.50908 4.55035 4.70090 4.79381 4.80931 4.89581 4.98335 4.99867 5.02851 5.05521 5.10046 5.14073 5.15283 5.21399 5.35695 5.43527 5.55673 5.78698 5.83617 5.98479 6.09967 6.29976 6.62705 6.69145 6.95407 7.11661 7.22422 7.35434 8.74914 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.001949 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.469776 B =14360.505968 C =15231.041121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C 0.292 3.708 4 N -0.554 5.554 5 C 0.206 3.794 6 C 0.241 3.759 7 N -0.717 5.717 8 C 0.720 3.280 9 O -0.593 6.593 10 N -0.634 5.634 11 C 0.293 3.707 12 C -0.297 4.297 13 C 0.088 3.912 14 C -0.085 4.085 15 N -0.343 5.343 16 C 0.276 3.724 17 C -0.553 4.553 18 H 0.049 0.951 19 C 0.022 3.978 20 N -0.918 5.918 21 Si 0.971 3.029 22 H -0.276 1.276 23 H -0.273 1.273 24 H -0.265 1.265 25 N -0.360 5.360 26 N -0.316 5.316 27 N -0.466 5.466 28 H 0.458 0.542 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.410 0.590 37 H 0.420 0.580 38 H 0.168 0.832 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.024 0.976 43 H 0.052 0.948 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.521 -28.206 5.304 32.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 C 0.014 3.986 4 N -0.284 5.284 5 C -0.077 4.077 6 C 0.115 3.885 7 N -0.375 5.375 8 C 0.419 3.581 9 O -0.470 6.470 10 N -0.286 5.286 11 C 0.037 3.963 12 C -0.328 4.328 13 C -0.043 4.043 14 C -0.143 4.143 15 N -0.126 5.126 16 C 0.157 3.843 17 C -0.591 4.591 18 H 0.068 0.932 19 C -0.179 4.179 20 N -0.556 5.556 21 Si 0.794 3.206 22 H -0.201 1.201 23 H -0.198 1.198 24 H -0.190 1.190 25 N -0.191 5.191 26 N -0.147 5.147 27 N -0.187 5.187 28 H 0.307 0.693 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.245 0.755 37 H 0.258 0.742 38 H 0.185 0.815 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.262 -26.871 5.372 30.892 hybrid contribution -0.582 -0.609 0.533 0.997 sum 13.680 -27.481 5.905 31.260 Atomic orbital electron populations 1.21685 0.93027 1.03534 1.02074 1.20444 0.97295 0.83643 1.06741 1.25189 0.89244 0.98454 0.85691 1.70366 1.28816 0.99832 1.29348 1.23963 0.94554 0.95765 0.93441 1.19167 0.90324 0.83017 0.95969 1.44623 1.36893 1.17066 1.38911 1.15521 0.79956 0.80647 0.81939 1.90858 1.53478 1.71633 1.31036 1.41301 1.34638 1.15236 1.37422 1.18913 0.94915 0.87296 0.95130 1.21418 1.09590 0.96437 1.05309 1.21744 0.90122 0.97965 0.94432 1.20499 1.02304 0.96460 0.95052 1.48759 1.25177 1.14442 1.24195 1.19236 0.87455 0.79989 0.97652 1.21417 1.05345 1.04648 1.27697 0.93242 1.25736 1.00986 0.94247 0.96913 1.69997 1.35765 1.08653 1.41173 0.85417 0.78180 0.77821 0.79140 1.20129 1.19751 1.18993 1.77167 1.23473 0.97120 1.21341 1.77998 1.24759 0.95488 1.16491 1.48028 1.36673 1.07964 1.25990 0.69288 0.93091 0.93130 0.89313 0.86927 0.86100 0.88555 0.88702 0.75452 0.74239 0.81452 0.88889 0.91437 0.87933 0.95784 0.92973 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.87 71.98 0.71 -0.13 16 2 C -0.04 -0.14 6.56 29.85 0.20 0.06 16 3 C 0.29 3.45 7.51 138.23 1.04 4.49 16 4 N -0.55 -10.43 11.16 -179.72 -2.01 -12.44 16 5 C 0.21 4.09 7.51 138.63 1.04 5.13 16 6 C 0.24 5.02 6.30 85.63 0.54 5.56 16 7 N -0.72 -15.80 5.55 -482.29 -2.68 -18.48 16 8 C 0.72 21.80 8.53 179.06 1.53 23.33 16 9 O -0.59 -21.72 13.47 -4.02 -0.05 -21.77 16 10 N -0.63 -20.41 5.45 -321.23 -1.75 -22.16 16 11 C 0.29 12.34 8.11 133.31 1.08 13.42 16 12 C -0.30 -12.56 9.52 22.10 0.21 -12.35 16 13 C 0.09 3.80 6.93 41.39 0.29 4.09 16 14 C -0.09 -2.92 9.89 71.24 0.70 -2.21 16 15 N -0.34 -17.02 3.59 -338.45 -1.22 -18.23 16 16 C 0.28 14.84 5.81 85.63 0.50 15.33 16 17 C -0.55 -31.44 9.39 25.60 0.24 -31.20 16 18 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 19 C 0.02 1.23 5.46 84.66 0.46 1.69 16 20 N -0.92 -52.36 13.29 21.45 0.28 -52.08 16 21 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 25 N -0.36 -17.39 12.59 -54.43 -0.69 -18.08 16 26 N -0.32 -5.92 12.80 -51.33 -0.66 -6.58 16 27 N -0.47 -5.11 7.45 -50.70 -0.38 -5.49 16 28 H 0.46 1.43 8.96 -213.09 -1.91 -0.48 16 29 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16 34 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.41 7.31 8.48 -92.71 -0.79 6.52 16 37 H 0.42 10.88 8.84 -92.71 -0.82 10.06 16 38 H 0.17 6.87 5.91 -2.91 -0.02 6.85 16 39 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.07 2.52 7.71 -2.39 -0.02 2.50 16 41 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 42 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 2.77 7.65 -2.39 -0.02 2.75 16 44 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -78.13 382.67 -1.02 -79.14 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -2.44 Total: 23.34 kcal Atomic # 6 Polarization: 18.67 SS G_CDS: 8.54 Total: 27.20 kcal Atomic # 7 Polarization: -144.44 SS G_CDS: -9.09 Total: -153.53 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -78.13 -1.02 -79.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413542592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.071 kcal (2) G-P(sol) polarization free energy of solvation -78.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds