Wall clock time and date at job start Tue Mar 31 2020 17:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38251 * 120.00210 * 2 1 4 4 C 1.38221 * 120.00017 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99626 * 179.97438 * 4 3 2 6 6 O 1.43756 * 109.62920 * 103.91247 * 5 4 3 7 7 C 1.44589 * 104.91548 * 215.70406 * 6 5 4 8 8 C 1.54917 * 101.63665 * 36.26930 * 7 6 5 9 9 O 1.43368 * 109.63613 * 344.68966 * 5 4 3 10 10 C 1.38247 * 119.99961 * 0.02634 * 4 3 2 11 11 C 1.50705 * 120.00076 * 179.97438 * 10 4 3 12 12 C 1.38219 * 120.00047 * 359.69562 * 10 4 3 13 13 C 1.38211 * 119.99846 * 179.97438 * 2 1 3 14 14 C 1.50701 * 119.99983 * 359.97438 * 13 2 1 15 15 N 1.46900 * 109.47034 * 80.00268 * 14 13 2 16 16 C 1.47964 * 110.99873 * 189.99925 * 15 14 13 17 17 C 1.53936 * 86.17896 * 222.41598 * 16 15 14 18 18 O 1.42894 * 113.73695 * 269.25386 * 17 16 15 19 19 C 1.50710 * 113.72850 * 138.07690 * 17 16 15 20 20 H 1.07993 * 120.00160 * 6.89305 * 19 17 16 21 21 C 1.37874 * 119.99500 * 186.88767 * 19 17 16 22 22 N 1.31522 * 119.99594 * 178.34163 * 21 19 17 23 23 Si 1.86798 * 120.00325 * 358.34373 * 21 19 17 24 24 H 1.48495 * 109.47265 * 269.99805 * 23 21 19 25 25 H 1.48505 * 109.47143 * 29.99904 * 23 21 19 26 26 H 1.48499 * 109.47179 * 149.99934 * 23 21 19 27 27 C 1.48192 * 111.06814 * 90.56898 * 15 14 13 28 28 H 1.09006 * 109.47303 * 270.02620 * 1 2 3 29 29 H 1.09002 * 109.47145 * 30.01918 * 1 2 3 30 30 H 1.08996 * 109.47839 * 150.02325 * 1 2 3 31 31 H 1.07998 * 119.99953 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.62351 * 224.29456 * 5 4 3 33 33 H 1.09002 * 111.09034 * 278.15702 * 7 6 5 34 34 H 1.08993 * 110.97561 * 154.32638 * 7 6 5 35 35 H 1.09004 * 110.69329 * 205.96149 * 8 7 6 36 36 H 1.08994 * 110.69641 * 82.75187 * 8 7 6 37 37 H 1.08996 * 109.47182 * 89.99682 * 11 10 4 38 38 H 1.08997 * 109.46721 * 209.99502 * 11 10 4 39 39 H 1.08996 * 109.46570 * 329.99549 * 11 10 4 40 40 H 1.07999 * 119.99881 * 180.30326 * 12 10 4 41 41 H 1.09007 * 109.47051 * 320.00131 * 14 13 2 42 42 H 1.09000 * 109.47364 * 200.00569 * 14 13 2 43 43 H 1.09002 * 113.75665 * 108.09615 * 16 15 14 44 44 H 1.08998 * 113.85836 * 336.74819 * 16 15 14 45 45 H 0.96694 * 114.00278 * 162.48386 * 18 17 16 46 46 H 0.96996 * 120.00167 * 358.20463 * 22 21 19 47 47 H 1.08996 * 113.75836 * 23.23806 * 27 15 14 48 48 H 1.09005 * 113.81861 * 251.80777 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3339 2.5023 0.0000 6 8 4.8568 2.7587 1.3143 7 6 4.7617 4.1919 1.4796 8 6 3.4363 4.5044 0.7410 9 8 3.4470 3.5705 -0.3577 10 6 4.2716 -0.0001 0.0005 11 6 5.7787 -0.0001 0.0005 12 6 3.5805 -1.1971 0.0063 13 6 2.1980 -1.1970 0.0005 14 6 1.4444 -2.5020 0.0017 15 7 0.9908 -2.8068 -1.3619 16 6 0.0496 -3.9484 -1.3649 17 6 0.8110 -4.4400 -2.6092 18 8 0.2685 -3.9618 -3.8416 19 6 1.0660 -5.9253 -2.6166 20 1 0.6273 -6.5524 -1.8546 21 6 1.8593 -6.4836 -3.5964 22 7 2.1085 -7.7749 -3.5841 23 14 2.5803 -5.4059 -4.9411 24 1 1.6374 -5.3467 -6.0867 25 1 2.8029 -4.0364 -4.4118 26 1 3.8738 -5.9780 -5.3937 27 6 1.9998 -3.6100 -2.0919 28 1 -0.3634 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5134 31 1 1.6583 2.1326 0.0004 32 1 5.1537 2.4515 -0.7167 33 1 5.6020 4.6982 1.0045 34 1 4.6932 4.4593 2.5340 35 1 3.4327 5.5308 0.3739 36 1 2.5808 4.3239 1.3917 37 1 6.1420 -0.0001 1.0281 38 1 6.1419 -0.8902 -0.5132 39 1 6.1420 0.8898 -0.5134 40 1 4.1205 -2.1323 0.0113 41 1 0.5812 -2.4226 0.6626 42 1 2.0991 -3.2993 0.3536 43 1 -0.9836 -3.6652 -1.5657 44 1 0.1501 -4.6050 -0.5006 45 1 0.8735 -4.0350 -4.5923 46 1 1.7558 -8.3302 -2.8713 47 1 2.6734 -4.1663 -1.4402 48 1 2.5219 -3.0567 -2.8727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434528256.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:39 Heat of formation + Delta-G solvation = -67.204805 kcal Electronic energy + Delta-G solvation = -29385.630527 eV Core-core repulsion = 25407.114396 eV Total energy + Delta-G solvation = -3978.516131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.93563 -39.76946 -38.77130 -35.36205 -35.10393 -33.91763 -32.50506 -32.17914 -30.26938 -29.18998 -28.29932 -26.01071 -25.43974 -25.11778 -23.94584 -23.59192 -21.91975 -21.64734 -19.47614 -19.06996 -17.83457 -17.69031 -17.12190 -16.27029 -15.95422 -15.71939 -15.43514 -15.10903 -14.91508 -14.68652 -14.48729 -13.83198 -13.59697 -13.56875 -13.28760 -13.11442 -13.05734 -12.93254 -12.77921 -12.65240 -12.33115 -12.09035 -11.92340 -11.81580 -11.71407 -11.65129 -11.25057 -11.15176 -10.80849 -10.71407 -10.57707 -10.45168 -10.20490 -9.89455 -9.55737 -9.36889 -8.74543 -8.68547 -8.47397 -8.19198 -8.06616 -6.57558 -4.34145 1.32208 1.53090 3.13562 3.22739 3.26010 3.41921 3.60999 3.85591 4.19617 4.29987 4.46419 4.61373 4.63903 4.75242 4.84759 4.90099 4.98506 5.01867 5.05703 5.08774 5.22214 5.28742 5.39236 5.49359 5.50664 5.60473 5.63903 5.65521 5.70835 5.77005 5.81021 5.88956 5.89037 5.97503 6.09705 6.19182 6.23985 6.40989 6.44693 6.52153 6.58935 6.60747 6.79889 6.83082 6.90007 6.99352 7.13751 7.70522 7.73855 8.17191 8.64204 8.73968 9.40787 10.76369 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.002924 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.518460 B = 9574.262078 C =10110.501001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.075 4.075 3 C -0.086 4.086 4 C -0.122 4.122 5 C 0.281 3.719 6 O -0.368 6.368 7 C 0.014 3.986 8 C 0.019 3.981 9 O -0.378 6.378 10 C -0.068 4.068 11 C -0.114 4.114 12 C -0.115 4.115 13 C -0.048 4.048 14 C 0.052 3.948 15 N -0.469 5.469 16 C 0.023 3.977 17 C 0.203 3.797 18 O -0.554 6.554 19 C -0.607 4.607 20 H 0.065 0.935 21 C 0.034 3.966 22 N -0.900 5.900 23 Si 1.036 2.964 24 H -0.276 1.276 25 H -0.268 1.268 26 H -0.285 1.285 27 C -0.030 4.030 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.122 0.878 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.349 0.651 46 H 0.270 0.730 47 H 0.071 0.929 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.383 23.339 10.739 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.076 4.076 3 C -0.104 4.104 4 C -0.122 4.122 5 C 0.186 3.814 6 O -0.289 6.289 7 C -0.062 4.062 8 C -0.058 4.058 9 O -0.298 6.298 10 C -0.068 4.068 11 C -0.170 4.170 12 C -0.133 4.133 13 C -0.048 4.048 14 C -0.076 4.076 15 N -0.191 5.191 16 C -0.106 4.106 17 C 0.162 3.838 18 O -0.363 6.363 19 C -0.645 4.645 20 H 0.083 0.917 21 C -0.172 4.172 22 N -0.533 5.533 23 Si 0.865 3.135 24 H -0.203 1.203 25 H -0.194 1.194 26 H -0.211 1.211 27 C -0.159 4.159 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.141 0.859 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.140 0.860 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.199 0.801 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.558 23.891 9.475 26.295 hybrid contribution -0.070 -0.753 1.606 1.775 sum 5.488 23.138 11.081 26.235 Atomic orbital electron populations 1.20824 0.91102 1.03795 1.01533 1.19686 0.96237 0.92024 0.99635 1.20735 0.92972 0.97629 0.99041 1.19582 0.94050 0.92895 1.05721 1.22652 0.88571 0.85939 0.84227 1.89293 1.83535 1.22103 1.33940 1.24363 0.97167 0.81812 1.02863 1.24213 0.98074 0.94562 0.88915 1.88930 1.67000 1.34116 1.39788 1.19536 0.95787 0.92147 0.99314 1.20802 0.91309 1.02497 1.02424 1.20899 0.93608 0.97290 1.01526 1.19719 0.93138 0.94628 0.97325 1.21648 0.98491 0.93522 0.93905 1.68596 1.09291 1.30853 1.10401 1.23944 0.97910 0.90840 0.97888 1.20450 0.88801 0.92382 0.82139 1.86452 1.44869 1.86806 1.18212 1.22392 1.34239 0.91664 1.16220 0.91680 1.25802 0.94297 0.97679 0.99466 1.70793 1.43476 1.04870 1.34164 0.84242 0.77455 0.75426 0.76351 1.20269 1.19441 1.21115 1.25192 0.96866 0.95121 0.98685 0.92001 0.92030 0.89684 0.85875 0.88903 0.90579 0.87356 0.88153 0.90563 0.90927 0.91385 0.91906 0.86007 0.90517 0.93214 0.90226 0.91197 0.80094 0.91944 0.91080 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 9.26 36.00 0.33 -1.21 16 2 C -0.08 -1.13 5.88 -104.63 -0.62 -1.75 16 3 C -0.09 -1.22 9.02 -39.58 -0.36 -1.58 16 4 C -0.12 -1.69 5.50 -104.62 -0.58 -2.26 16 5 C 0.28 3.27 3.52 36.01 0.13 3.40 16 6 O -0.37 -4.04 11.30 -59.05 -0.67 -4.71 16 7 C 0.01 0.10 7.95 38.17 0.30 0.40 16 8 C 0.02 0.14 8.07 38.17 0.31 0.45 16 9 O -0.38 -4.27 9.84 -59.05 -0.58 -4.85 16 10 C -0.07 -0.94 5.88 -104.62 -0.62 -1.56 16 11 C -0.11 -1.26 9.59 36.01 0.35 -0.92 16 12 C -0.11 -1.74 9.33 -39.58 -0.37 -2.11 16 13 C -0.05 -0.76 5.44 -104.62 -0.57 -1.33 16 14 C 0.05 0.87 4.06 -4.98 -0.02 0.85 16 15 N -0.47 -9.16 5.48 -239.47 -1.31 -10.47 16 16 C 0.02 0.47 7.34 -2.76 -0.02 0.45 16 17 C 0.20 4.88 1.06 -90.83 -0.10 4.79 16 18 O -0.55 -13.67 13.26 -35.23 -0.47 -14.14 16 19 C -0.61 -16.71 9.05 -34.44 -0.31 -17.02 16 20 H 0.07 1.91 8.04 -52.49 -0.42 1.49 16 21 C 0.03 0.95 5.47 -17.82 -0.10 0.86 16 22 N -0.90 -26.91 13.70 55.43 0.76 -26.15 16 23 Si 1.04 24.01 24.77 -169.99 -4.21 19.79 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.27 -5.67 4.71 56.52 0.27 -5.40 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C -0.03 -0.64 6.21 -2.63 -0.02 -0.66 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 30 H 0.08 1.27 6.35 -51.93 -0.33 0.94 16 31 H 0.12 1.61 7.15 -52.49 -0.38 1.23 16 32 H 0.09 1.00 6.64 -51.93 -0.34 0.66 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.06 0.62 6.22 -51.93 -0.32 0.30 16 40 H 0.12 1.75 8.04 -52.49 -0.42 1.33 16 41 H 0.08 1.16 7.22 -51.92 -0.38 0.78 16 42 H 0.05 0.82 7.25 -51.93 -0.38 0.45 16 43 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 44 H 0.07 1.40 7.88 -51.93 -0.41 0.99 16 45 H 0.35 8.02 4.33 45.56 0.20 8.22 16 46 H 0.27 8.04 8.71 -40.82 -0.36 7.68 16 47 H 0.07 1.53 7.44 -51.93 -0.39 1.14 16 48 H 0.08 1.66 6.55 -51.93 -0.34 1.32 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -32.14 374.87 -10.07 -42.21 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -6.99 Total: 11.86 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.25 Total: -19.19 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.55 Total: -36.62 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -1.72 Total: -23.70 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -4.21 Total: 19.79 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.14 -10.07 -42.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434528256.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.998 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds