Wall clock time and date at job start Tue Mar 31 2020 17:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38251 * 120.00210 * 2 1 4 4 C 1.38221 * 120.00017 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99626 * 179.97438 * 4 3 2 6 6 O 1.43756 * 109.62920 * 103.91247 * 5 4 3 7 7 C 1.44589 * 104.91548 * 215.70406 * 6 5 4 8 8 C 1.54917 * 101.63665 * 36.26930 * 7 6 5 9 9 O 1.43368 * 109.63613 * 344.68966 * 5 4 3 10 10 C 1.38247 * 119.99961 * 0.02634 * 4 3 2 11 11 C 1.50705 * 120.00076 * 179.97438 * 10 4 3 12 12 C 1.38219 * 120.00047 * 359.69562 * 10 4 3 13 13 C 1.38211 * 119.99846 * 179.97438 * 2 1 3 14 14 C 1.50701 * 119.99983 * 359.97438 * 13 2 1 15 15 N 1.46900 * 109.47034 * 80.00268 * 14 13 2 16 16 C 1.47964 * 110.99873 * 189.99925 * 15 14 13 17 17 C 1.53936 * 86.17896 * 222.41598 * 16 15 14 18 18 O 1.42894 * 113.73695 * 269.25386 * 17 16 15 19 19 C 1.50710 * 113.72850 * 138.07690 * 17 16 15 20 20 H 1.07993 * 120.00160 * 6.89305 * 19 17 16 21 21 C 1.37874 * 119.99500 * 186.88767 * 19 17 16 22 22 N 1.31522 * 119.99594 * 178.34163 * 21 19 17 23 23 Si 1.86798 * 120.00325 * 358.34373 * 21 19 17 24 24 H 1.48495 * 109.47265 * 269.99805 * 23 21 19 25 25 H 1.48505 * 109.47143 * 29.99904 * 23 21 19 26 26 H 1.48499 * 109.47179 * 149.99934 * 23 21 19 27 27 C 1.48192 * 111.06814 * 90.56898 * 15 14 13 28 28 H 1.09006 * 109.47303 * 270.02620 * 1 2 3 29 29 H 1.09002 * 109.47145 * 30.01918 * 1 2 3 30 30 H 1.08996 * 109.47839 * 150.02325 * 1 2 3 31 31 H 1.07998 * 119.99953 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.62351 * 224.29456 * 5 4 3 33 33 H 1.09002 * 111.09034 * 278.15702 * 7 6 5 34 34 H 1.08993 * 110.97561 * 154.32638 * 7 6 5 35 35 H 1.09004 * 110.69329 * 205.96149 * 8 7 6 36 36 H 1.08994 * 110.69641 * 82.75187 * 8 7 6 37 37 H 1.08996 * 109.47182 * 89.99682 * 11 10 4 38 38 H 1.08997 * 109.46721 * 209.99502 * 11 10 4 39 39 H 1.08996 * 109.46570 * 329.99549 * 11 10 4 40 40 H 1.07999 * 119.99881 * 180.30326 * 12 10 4 41 41 H 1.09007 * 109.47051 * 320.00131 * 14 13 2 42 42 H 1.09000 * 109.47364 * 200.00569 * 14 13 2 43 43 H 1.09002 * 113.75665 * 108.09615 * 16 15 14 44 44 H 1.08998 * 113.85836 * 336.74819 * 16 15 14 45 45 H 0.96694 * 114.00278 * 162.48386 * 18 17 16 46 46 H 0.96996 * 120.00167 * 358.20463 * 22 21 19 47 47 H 1.08996 * 113.75836 * 23.23806 * 27 15 14 48 48 H 1.09005 * 113.81861 * 251.80777 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3339 2.5023 0.0000 6 8 4.8568 2.7587 1.3143 7 6 4.7617 4.1919 1.4796 8 6 3.4363 4.5044 0.7410 9 8 3.4470 3.5705 -0.3577 10 6 4.2716 -0.0001 0.0005 11 6 5.7787 -0.0001 0.0005 12 6 3.5805 -1.1971 0.0063 13 6 2.1980 -1.1970 0.0005 14 6 1.4444 -2.5020 0.0017 15 7 0.9908 -2.8068 -1.3619 16 6 0.0496 -3.9484 -1.3649 17 6 0.8110 -4.4400 -2.6092 18 8 0.2685 -3.9618 -3.8416 19 6 1.0660 -5.9253 -2.6166 20 1 0.6273 -6.5524 -1.8546 21 6 1.8593 -6.4836 -3.5964 22 7 2.1085 -7.7749 -3.5841 23 14 2.5803 -5.4059 -4.9411 24 1 1.6374 -5.3467 -6.0867 25 1 2.8029 -4.0364 -4.4118 26 1 3.8738 -5.9780 -5.3937 27 6 1.9998 -3.6100 -2.0919 28 1 -0.3634 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5134 31 1 1.6583 2.1326 0.0004 32 1 5.1537 2.4515 -0.7167 33 1 5.6020 4.6982 1.0045 34 1 4.6932 4.4593 2.5340 35 1 3.4327 5.5308 0.3739 36 1 2.5808 4.3239 1.3917 37 1 6.1420 -0.0001 1.0281 38 1 6.1419 -0.8902 -0.5132 39 1 6.1420 0.8898 -0.5134 40 1 4.1205 -2.1323 0.0113 41 1 0.5812 -2.4226 0.6626 42 1 2.0991 -3.2993 0.3536 43 1 -0.9836 -3.6652 -1.5657 44 1 0.1501 -4.6050 -0.5006 45 1 0.8735 -4.0350 -4.5923 46 1 1.7558 -8.3302 -2.8713 47 1 2.6734 -4.1663 -1.4402 48 1 2.5219 -3.0567 -2.8727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434528256.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:38 Heat of formation + Delta-G solvation = -90.836793 kcal Electronic energy + Delta-G solvation = -29386.655287 eV Core-core repulsion = 25407.114396 eV Total energy + Delta-G solvation = -3979.540891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.78280 -41.18685 -40.02270 -36.75912 -36.10190 -35.12181 -34.65622 -33.28249 -31.19396 -30.16591 -29.63244 -27.59597 -27.14434 -26.14718 -25.18512 -24.20759 -23.28975 -22.82333 -20.91260 -20.59735 -19.88949 -18.44726 -17.88096 -17.67403 -17.12146 -17.03975 -16.62652 -16.53962 -16.23189 -15.91348 -15.40405 -15.14155 -14.84778 -14.72155 -14.64512 -14.29074 -14.14835 -14.03097 -13.84328 -13.75614 -13.72040 -13.55998 -13.35783 -13.06397 -12.82095 -12.75546 -12.53059 -12.37056 -12.19787 -12.08140 -11.89747 -11.77389 -11.53851 -11.20445 -11.18189 -10.82250 -10.73076 -10.46844 -9.81914 -9.65595 -9.29165 -8.78989 -6.58957 0.23557 0.44152 1.35582 1.44258 1.58178 2.36920 2.38582 2.72221 2.85248 2.93037 3.10440 3.56599 3.64810 3.73291 3.77793 3.88796 3.96457 3.99900 4.05733 4.09476 4.14905 4.20293 4.25085 4.34281 4.44661 4.55380 4.60234 4.61738 4.66060 4.71508 4.74138 4.77363 4.80366 4.82595 4.85274 4.90240 4.95857 5.10807 5.11931 5.16715 5.28458 5.39254 5.51384 5.59464 5.68433 5.74949 5.87375 6.04406 6.04875 6.14003 6.38120 6.83625 7.25132 8.51907 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.002924 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.518460 B = 9574.262078 C =10110.501001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.127 4.127 5 C 0.284 3.716 6 O -0.387 6.387 7 C 0.011 3.989 8 C 0.012 3.988 9 O -0.397 6.397 10 C -0.075 4.075 11 C -0.111 4.111 12 C -0.127 4.127 13 C -0.068 4.068 14 C 0.057 3.943 15 N -0.461 5.461 16 C 0.028 3.972 17 C 0.186 3.814 18 O -0.561 6.561 19 C -0.612 4.612 20 H 0.031 0.969 21 C -0.015 4.015 22 N -0.931 5.931 23 Si 1.071 2.929 24 H -0.257 1.257 25 H -0.238 1.238 26 H -0.285 1.285 27 C -0.018 4.018 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.356 0.644 46 H 0.256 0.744 47 H 0.068 0.932 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.190 26.748 10.969 29.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.085 4.085 3 C -0.110 4.110 4 C -0.128 4.128 5 C 0.189 3.811 6 O -0.308 6.308 7 C -0.064 4.064 8 C -0.063 4.063 9 O -0.318 6.318 10 C -0.075 4.075 11 C -0.167 4.167 12 C -0.146 4.146 13 C -0.068 4.068 14 C -0.071 4.071 15 N -0.184 5.184 16 C -0.100 4.100 17 C 0.146 3.854 18 O -0.371 6.371 19 C -0.650 4.650 20 H 0.049 0.951 21 C -0.215 4.215 22 N -0.566 5.566 23 Si 0.893 3.107 24 H -0.183 1.183 25 H -0.162 1.162 26 H -0.212 1.212 27 C -0.147 4.147 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.141 0.859 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.207 0.793 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.346 27.319 9.733 29.688 hybrid contribution -0.362 -1.753 1.658 2.440 sum 5.983 25.566 11.391 28.621 Atomic orbital electron populations 1.20803 0.90135 1.03401 1.02507 1.19898 0.97089 0.92011 0.99531 1.20899 0.93422 0.97709 0.99018 1.19969 0.94265 0.94135 1.04421 1.22577 0.88529 0.85159 0.84852 1.89263 1.83444 1.24614 1.33478 1.24647 0.97511 0.79850 1.04400 1.24478 0.98439 0.95109 0.88289 1.88909 1.67071 1.34583 1.41267 1.19837 0.97250 0.91766 0.98674 1.20825 0.89473 1.03323 1.03085 1.21047 0.93598 0.97999 1.01938 1.19701 0.93518 0.94392 0.99226 1.21624 0.99148 0.94063 0.92219 1.68551 1.08083 1.29396 1.12335 1.23885 0.98404 0.91301 0.96434 1.20558 0.91245 0.90522 0.83110 1.86430 1.45507 1.86492 1.18646 1.22572 1.33536 0.93727 1.15181 0.95115 1.27239 0.94461 0.97954 1.01799 1.70920 1.45264 1.06032 1.34414 0.83845 0.77102 0.75314 0.74481 1.18277 1.16220 1.21169 1.24963 0.96170 0.94744 0.98859 0.90347 0.90990 0.91389 0.84968 0.88161 0.88853 0.85275 0.85588 0.90424 0.90253 0.90966 0.90666 0.85927 0.89091 0.93484 0.89511 0.90914 0.79327 0.93508 0.91412 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.78 9.26 71.23 0.66 -2.12 16 2 C -0.08 -2.42 5.88 -19.87 -0.12 -2.54 16 3 C -0.09 -2.49 9.02 22.27 0.20 -2.29 16 4 C -0.13 -3.32 5.50 -19.87 -0.11 -3.43 16 5 C 0.28 6.02 3.52 71.24 0.25 6.27 16 6 O -0.39 -7.60 11.30 -126.21 -1.43 -9.02 16 7 C 0.01 0.12 7.95 72.64 0.58 0.70 16 8 C 0.01 0.15 8.07 72.64 0.59 0.73 16 9 O -0.40 -8.09 9.84 -126.21 -1.24 -9.33 16 10 C -0.08 -1.98 5.88 -19.86 -0.12 -2.10 16 11 C -0.11 -2.25 9.59 71.24 0.68 -1.57 16 12 C -0.13 -3.73 9.33 22.27 0.21 -3.52 16 13 C -0.07 -2.08 5.44 -19.87 -0.11 -2.19 16 14 C 0.06 1.84 4.06 85.56 0.35 2.19 16 15 N -0.46 -17.46 5.48 -914.75 -5.02 -22.47 16 16 C 0.03 1.16 7.34 86.41 0.63 1.80 16 17 C 0.19 8.86 1.06 -10.89 -0.01 8.85 16 18 O -0.56 -26.87 13.26 -148.98 -1.98 -28.84 16 19 C -0.61 -34.38 9.05 25.60 0.23 -34.14 16 20 H 0.03 1.88 8.04 -2.91 -0.02 1.86 16 21 C -0.02 -0.86 5.47 84.65 0.46 -0.40 16 22 N -0.93 -57.28 13.70 21.45 0.29 -56.99 16 23 Si 1.07 47.62 24.77 68.60 1.70 49.32 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.24 -9.31 4.71 99.48 0.47 -8.84 16 26 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 27 C -0.02 -0.76 6.21 86.37 0.54 -0.23 16 28 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.07 1.61 8.09 -2.39 -0.02 1.59 16 30 H 0.07 1.93 6.35 -2.39 -0.02 1.91 16 31 H 0.13 3.22 7.15 -2.91 -0.02 3.20 16 32 H 0.10 1.94 6.64 -2.38 -0.02 1.93 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 39 H 0.07 1.33 6.22 -2.39 -0.01 1.31 16 40 H 0.12 3.45 8.04 -2.91 -0.02 3.42 16 41 H 0.09 2.63 7.22 -2.38 -0.02 2.62 16 42 H 0.05 1.53 7.25 -2.39 -0.02 1.52 16 43 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 44 H 0.07 2.91 7.88 -2.39 -0.02 2.89 16 45 H 0.36 15.59 4.33 -74.06 -0.32 15.27 16 46 H 0.26 15.94 8.71 -92.71 -0.81 15.13 16 47 H 0.07 2.88 7.44 -2.39 -0.02 2.86 16 48 H 0.08 3.27 6.55 -2.38 -0.02 3.26 16 Total: -1.00 -69.99 374.87 -2.37 -72.36 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: 0.38 Total: 38.98 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 4.92 Total: -33.99 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -4.72 Total: -79.46 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -4.64 Total: -47.20 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.70 Total: 49.32 kcal Total: -69.99 -2.37 -72.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434528256.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.480 kcal (2) G-P(sol) polarization free energy of solvation -69.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds