Wall clock time and date at job start Tue Mar 31 2020 18:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.30712 * 125.52347 * 299.69131 * 4 2 1 6 6 N 1.40447 * 106.79115 * 179.86008 * 5 4 2 7 7 H 0.96998 * 126.82161 * 180.16483 * 6 5 4 8 8 C 1.34430 * 106.35370 * 0.39838 * 6 5 4 9 9 C 1.50693 * 125.96034 * 179.77926 * 8 6 5 10 10 N 1.46504 * 109.47422 * 94.97739 * 9 8 6 11 11 C 1.34766 * 120.00188 * 180.02562 * 10 9 8 12 12 O 1.21593 * 120.00452 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99841 * 180.02562 * 11 10 9 14 14 C 1.40199 * 120.00044 * 179.97438 * 13 11 10 15 15 C 1.40408 * 125.97148 * 359.71663 * 14 13 11 16 16 C 1.35241 * 107.86497 * 179.82489 * 15 14 13 17 17 N 1.34962 * 107.85974 * 0.43281 * 16 15 14 18 18 C 1.46508 * 125.97761 * 179.70836 * 17 16 15 19 19 C 1.50693 * 109.47230 * 124.99776 * 18 17 16 20 20 H 1.08001 * 120.00473 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99740 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99846 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99885 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47496 * 89.99704 * 23 21 19 25 25 H 1.48503 * 109.46963 * 210.00138 * 23 21 19 26 26 H 1.48505 * 109.46934 * 329.99237 * 23 21 19 27 27 N 1.31215 * 125.97321 * 180.02562 * 14 13 11 28 28 N 1.30830 * 108.07545 * 359.75741 * 8 6 5 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.46934 * 214.97504 * 9 8 6 37 37 H 1.09001 * 109.47572 * 334.97778 * 9 8 6 38 38 H 0.97000 * 119.99504 * 359.97438 * 10 9 8 39 39 H 0.97004 * 120.00541 * 0.02562 * 13 11 10 40 40 H 1.08001 * 126.06078 * 359.97438 * 15 14 13 41 41 H 1.07998 * 126.06664 * 180.15275 * 16 15 14 42 42 H 1.09007 * 109.46705 * 244.99997 * 18 17 16 43 43 H 1.08998 * 109.46507 * 4.99054 * 18 17 16 44 44 H 0.96995 * 119.99484 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7887 -0.3561 2.4648 6 7 2.4401 -1.2871 3.2903 7 1 2.4480 -1.2985 4.2602 8 6 3.0546 -2.1562 2.4693 9 6 3.8888 -3.3369 2.8946 10 7 3.0551 -4.5413 2.9171 11 6 3.5916 -5.7258 3.2710 12 8 4.7679 -5.7951 3.5712 13 7 2.8246 -6.8339 3.2912 14 6 3.3829 -8.0662 3.6588 15 6 4.7206 -8.2901 4.0221 16 6 4.8582 -9.6047 4.3086 17 7 3.6590 -10.1960 4.1255 18 6 3.3618 -11.6176 4.3186 19 6 2.2127 -11.7642 5.2824 20 1 1.7502 -10.8863 5.7089 21 6 1.7525 -13.0191 5.6207 22 7 2.3161 -14.0882 5.1017 23 14 0.3277 -13.2009 6.8149 24 1 -0.9520 -13.2065 6.0616 25 1 0.4678 -14.4765 7.5622 26 1 0.3347 -12.0641 7.7704 27 7 2.7480 -9.2130 3.7181 28 7 2.8016 -1.7984 1.2366 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 4.7084 -3.4755 2.1895 37 1 4.2931 -3.1563 3.8906 38 1 2.1166 -4.4860 2.6780 39 1 1.8865 -6.7789 3.0506 40 1 5.5004 -7.5444 4.0673 41 1 5.7676 -10.0950 4.6232 42 1 3.0932 -12.0658 3.3620 43 1 4.2407 -12.1209 4.7215 44 1 1.9920 -14.9709 5.3394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434710006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:55 Heat of formation + Delta-G solvation = 135.051158 kcal Electronic energy + Delta-G solvation = -26697.077494 eV Core-core repulsion = 22688.376999 eV Total energy + Delta-G solvation = -4008.700496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.72266 -40.76842 -39.62902 -36.42960 -35.29493 -34.68105 -33.36205 -32.70049 -31.57657 -30.72270 -29.31611 -27.60222 -27.53346 -26.41148 -24.22818 -23.17376 -21.96434 -21.46426 -20.48648 -20.12323 -19.89773 -18.67026 -17.96306 -16.95189 -16.58348 -16.24776 -15.84408 -15.54001 -15.34132 -15.07252 -14.79443 -14.53117 -14.27811 -14.10315 -13.75696 -13.51342 -13.42923 -12.81769 -12.62592 -12.47837 -12.33067 -12.23199 -11.98513 -11.78290 -11.72089 -11.42160 -11.06591 -10.90926 -10.56807 -10.50586 -10.47451 -10.28903 -10.23470 -10.02238 -9.73625 -9.55718 -9.45894 -8.63877 -8.12991 -7.44631 -6.24860 -4.29866 0.93009 2.00032 2.18578 2.56830 2.61091 3.04688 3.22985 3.28829 3.31334 3.33767 3.58097 3.78626 4.02825 4.15372 4.22849 4.34158 4.57671 4.67077 4.82644 5.02234 5.10273 5.13013 5.20572 5.37512 5.39265 5.49478 5.50061 5.74749 5.76536 5.76853 5.78332 5.93701 5.98667 6.19675 6.45085 6.51022 6.52389 6.82835 6.95363 7.07757 7.44621 7.58918 7.68012 7.76830 7.91859 8.05188 8.44709 8.63995 8.79898 9.35690 10.83828 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.021040 B = 0.001782 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.477930 B =15707.842417 C =16403.005601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 C -0.143 4.143 4 C 0.233 3.767 5 N -0.302 5.302 6 N -0.471 5.471 7 H 0.444 0.556 8 C 0.268 3.732 9 C 0.223 3.777 10 N -0.742 5.742 11 C 0.719 3.281 12 O -0.563 6.563 13 N -0.640 5.640 14 C 0.274 3.726 15 C -0.286 4.286 16 C 0.052 3.948 17 N -0.319 5.319 18 C 0.258 3.742 19 C -0.529 4.529 20 H 0.069 0.931 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.908 3.092 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.273 1.273 27 N -0.306 5.306 28 N -0.518 5.518 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.401 0.599 39 H 0.408 0.592 40 H 0.161 0.839 41 H 0.168 0.832 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.420 28.098 -7.404 29.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 C -0.202 4.202 4 C -0.050 4.050 5 N -0.131 5.131 6 N -0.189 5.189 7 H 0.290 0.710 8 C -0.011 4.011 9 C 0.097 3.903 10 N -0.401 5.401 11 C 0.418 3.582 12 O -0.438 6.438 13 N -0.290 5.290 14 C 0.020 3.980 15 C -0.317 4.317 16 C -0.098 4.098 17 N -0.101 5.101 18 C 0.141 3.859 19 C -0.567 4.567 20 H 0.087 0.913 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.735 3.265 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.198 1.198 27 N -0.137 5.137 28 N -0.247 5.247 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.235 0.765 39 H 0.243 0.757 40 H 0.179 0.821 41 H 0.185 0.815 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.067 27.568 -7.410 28.546 hybrid contribution -0.859 0.012 1.298 1.557 sum -0.792 27.579 -6.111 28.259 Atomic orbital electron populations 1.21836 0.93078 1.02517 1.02785 1.19576 0.96230 0.95269 0.91316 1.21831 1.01376 0.94185 1.02780 1.24326 0.94780 0.92147 0.93728 1.78006 1.19652 1.13124 1.02271 1.48092 1.38792 1.21333 1.10725 0.71004 1.24220 0.95953 0.94525 0.86416 1.19439 0.90619 0.76920 1.03368 1.44813 1.13884 1.06130 1.75235 1.15428 0.84759 0.79468 0.78504 1.90897 1.14262 1.84385 1.54249 1.41295 1.13205 1.04167 1.70299 1.18759 0.92334 0.85112 1.01782 1.21502 0.96655 0.96214 1.17363 1.22561 0.91539 0.93670 1.02064 1.49067 1.04584 1.08956 1.47523 1.19746 0.98584 0.69085 0.98505 1.21259 1.16184 0.93126 1.26133 0.91318 1.24946 0.97281 0.95334 0.96528 1.69919 1.41521 0.98192 1.43677 0.86327 0.81968 0.77541 0.80642 1.20360 1.20983 1.19766 1.77333 1.15978 0.94843 1.25582 1.70431 1.19206 1.14926 1.20132 0.91317 0.91893 0.92336 0.88224 0.91325 0.91898 0.92401 0.87250 0.88705 0.76509 0.75749 0.82129 0.81483 0.93714 0.92494 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.18 37.16 0.34 -0.51 16 2 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 3 C -0.14 -0.81 9.17 37.15 0.34 -0.47 16 4 C 0.23 2.19 6.65 -156.85 -1.04 1.14 16 5 N -0.30 -2.82 12.80 32.42 0.41 -2.41 16 6 N -0.47 -3.38 7.45 32.62 0.24 -3.14 16 7 H 0.44 1.87 8.96 -182.34 -1.63 0.24 16 8 C 0.27 2.17 7.60 -155.70 -1.18 0.99 16 9 C 0.22 1.69 6.30 -5.19 -0.03 1.66 16 10 N -0.74 -6.65 5.55 -66.42 -0.37 -7.02 16 11 C 0.72 9.65 8.53 -86.93 -0.74 8.91 16 12 O -0.56 -9.25 13.47 5.28 0.07 -9.18 16 13 N -0.64 -9.45 5.46 -15.50 -0.08 -9.54 16 14 C 0.27 5.37 8.11 -154.35 -1.25 4.11 16 15 C -0.29 -5.54 9.61 -39.83 -0.38 -5.92 16 16 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 17 N -0.32 -7.34 3.67 -62.56 -0.23 -7.57 16 18 C 0.26 6.51 6.26 -5.19 -0.03 6.48 16 19 C -0.53 -14.61 9.24 -34.44 -0.32 -14.93 16 20 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 23 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 N -0.31 -6.94 12.42 31.45 0.39 -6.55 16 28 N -0.52 -5.24 11.19 -8.16 -0.09 -5.33 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.40 2.92 8.48 -40.82 -0.35 2.57 16 39 H 0.41 4.89 8.84 -40.82 -0.36 4.53 16 40 H 0.16 3.02 5.91 -52.49 -0.31 2.71 16 41 H 0.17 2.67 8.06 -52.49 -0.42 2.24 16 42 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 44 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -34.63 382.92 -10.34 -44.97 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.27 Total: 4.67 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -4.91 Total: 3.54 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: 1.01 Total: -65.99 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.07 Total: -9.18 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.63 -10.34 -44.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434710006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.024 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds