Wall clock time and date at job start Tue Mar 31 2020 18:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.30712 * 125.52347 * 299.69131 * 4 2 1 6 6 N 1.40447 * 106.79115 * 179.86008 * 5 4 2 7 7 H 0.96998 * 126.82161 * 180.16483 * 6 5 4 8 8 C 1.34430 * 106.35370 * 0.39838 * 6 5 4 9 9 C 1.50693 * 125.96034 * 179.77926 * 8 6 5 10 10 N 1.46504 * 109.47422 * 94.97739 * 9 8 6 11 11 C 1.34766 * 120.00188 * 180.02562 * 10 9 8 12 12 O 1.21593 * 120.00452 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99841 * 180.02562 * 11 10 9 14 14 C 1.40199 * 120.00044 * 179.97438 * 13 11 10 15 15 C 1.40408 * 125.97148 * 359.71663 * 14 13 11 16 16 C 1.35241 * 107.86497 * 179.82489 * 15 14 13 17 17 N 1.34962 * 107.85974 * 0.43281 * 16 15 14 18 18 C 1.46508 * 125.97761 * 179.70836 * 17 16 15 19 19 C 1.50693 * 109.47230 * 124.99776 * 18 17 16 20 20 H 1.08001 * 120.00473 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99740 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99846 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99885 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47496 * 89.99704 * 23 21 19 25 25 H 1.48503 * 109.46963 * 210.00138 * 23 21 19 26 26 H 1.48505 * 109.46934 * 329.99237 * 23 21 19 27 27 N 1.31215 * 125.97321 * 180.02562 * 14 13 11 28 28 N 1.30830 * 108.07545 * 359.75741 * 8 6 5 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.46934 * 214.97504 * 9 8 6 37 37 H 1.09001 * 109.47572 * 334.97778 * 9 8 6 38 38 H 0.97000 * 119.99504 * 359.97438 * 10 9 8 39 39 H 0.97004 * 120.00541 * 0.02562 * 13 11 10 40 40 H 1.08001 * 126.06078 * 359.97438 * 15 14 13 41 41 H 1.07998 * 126.06664 * 180.15275 * 16 15 14 42 42 H 1.09007 * 109.46705 * 244.99997 * 18 17 16 43 43 H 1.08998 * 109.46507 * 4.99054 * 18 17 16 44 44 H 0.96995 * 119.99484 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7887 -0.3561 2.4648 6 7 2.4401 -1.2871 3.2903 7 1 2.4480 -1.2985 4.2602 8 6 3.0546 -2.1562 2.4693 9 6 3.8888 -3.3369 2.8946 10 7 3.0551 -4.5413 2.9171 11 6 3.5916 -5.7258 3.2710 12 8 4.7679 -5.7951 3.5712 13 7 2.8246 -6.8339 3.2912 14 6 3.3829 -8.0662 3.6588 15 6 4.7206 -8.2901 4.0221 16 6 4.8582 -9.6047 4.3086 17 7 3.6590 -10.1960 4.1255 18 6 3.3618 -11.6176 4.3186 19 6 2.2127 -11.7642 5.2824 20 1 1.7502 -10.8863 5.7089 21 6 1.7525 -13.0191 5.6207 22 7 2.3161 -14.0882 5.1017 23 14 0.3277 -13.2009 6.8149 24 1 -0.9520 -13.2065 6.0616 25 1 0.4678 -14.4765 7.5622 26 1 0.3347 -12.0641 7.7704 27 7 2.7480 -9.2130 3.7181 28 7 2.8016 -1.7984 1.2366 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 4.7084 -3.4755 2.1895 37 1 4.2931 -3.1563 3.8906 38 1 2.1166 -4.4860 2.6780 39 1 1.8865 -6.7789 3.0506 40 1 5.5004 -7.5444 4.0673 41 1 5.7676 -10.0950 4.6232 42 1 3.0932 -12.0658 3.3620 43 1 4.2407 -12.1209 4.7215 44 1 1.9920 -14.9709 5.3394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434710006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:54 Heat of formation + Delta-G solvation = 111.032642 kcal Electronic energy + Delta-G solvation = -26698.119015 eV Core-core repulsion = 22688.376999 eV Total energy + Delta-G solvation = -4009.742017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.38048 -42.20240 -40.88761 -37.08102 -36.32683 -35.84738 -35.25240 -33.36834 -32.87883 -31.91310 -30.90329 -28.78587 -28.05039 -27.82873 -25.01631 -24.77589 -23.18143 -22.21259 -21.95681 -21.29256 -20.67342 -19.55871 -18.90587 -18.67123 -18.20982 -17.39497 -16.88246 -16.75492 -16.23450 -16.01058 -15.87747 -15.81152 -15.56356 -15.15954 -14.71587 -14.45707 -14.32284 -14.12624 -13.97949 -13.77300 -13.62320 -13.12674 -13.05051 -12.92268 -12.73227 -12.45930 -12.27821 -12.20703 -12.05649 -11.92774 -11.64835 -11.39703 -11.25294 -11.18589 -11.15285 -10.71434 -10.69527 -10.38722 -9.70734 -9.04266 -8.31542 -6.45574 0.24142 1.07130 1.12845 1.38753 1.39594 1.50535 1.53531 1.69348 1.70869 2.17847 2.37136 2.40357 2.71688 3.00030 3.13295 3.44617 3.56413 3.99515 4.06366 4.18795 4.29679 4.31206 4.47153 4.49585 4.78152 4.79647 4.88995 4.92083 4.94471 4.97231 5.00407 5.02465 5.05029 5.13771 5.24258 5.30628 5.32775 5.42934 5.57969 5.71440 5.85739 5.98351 6.00202 6.31802 6.62714 6.70222 6.93856 7.13866 7.24289 7.34861 8.75808 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.021040 B = 0.001782 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.477930 B =15707.842417 C =16403.005601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.006 4.006 3 C -0.137 4.137 4 C 0.223 3.777 5 N -0.318 5.318 6 N -0.459 5.459 7 H 0.456 0.544 8 C 0.274 3.726 9 C 0.227 3.773 10 N -0.721 5.721 11 C 0.722 3.278 12 O -0.591 6.591 13 N -0.635 5.635 14 C 0.284 3.716 15 C -0.290 4.290 16 C 0.056 3.944 17 N -0.345 5.345 18 C 0.272 3.728 19 C -0.547 4.547 20 H 0.053 0.947 21 C 0.018 3.982 22 N -0.920 5.920 23 Si 0.971 3.029 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.272 1.272 27 N -0.349 5.349 28 N -0.545 5.545 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.412 0.588 39 H 0.420 0.580 40 H 0.171 0.829 41 H 0.201 0.799 42 H 0.021 0.979 43 H 0.059 0.941 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.073 29.618 -7.037 30.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.059 4.059 5 N -0.148 5.148 6 N -0.180 5.180 7 H 0.305 0.695 8 C -0.005 4.005 9 C 0.100 3.900 10 N -0.379 5.379 11 C 0.421 3.579 12 O -0.468 6.468 13 N -0.286 5.286 14 C 0.029 3.971 15 C -0.321 4.321 16 C -0.093 4.093 17 N -0.127 5.127 18 C 0.154 3.846 19 C -0.585 4.585 20 H 0.071 0.929 21 C -0.182 4.182 22 N -0.559 5.559 23 Si 0.796 3.204 24 H -0.199 1.199 25 H -0.198 1.198 26 H -0.197 1.197 27 N -0.180 5.180 28 N -0.274 5.274 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.248 0.752 39 H 0.257 0.743 40 H 0.188 0.812 41 H 0.217 0.783 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.302 29.148 -7.045 29.989 hybrid contribution -0.700 -0.311 1.137 1.371 sum -1.002 28.837 -5.908 29.453 Atomic orbital electron populations 1.21796 0.92356 1.02096 1.03391 1.19726 0.96797 0.95714 0.90497 1.21790 1.00863 0.93510 1.03401 1.24780 0.94602 0.92101 0.94434 1.77967 1.20304 1.13915 1.02571 1.48037 1.37982 1.20611 1.11336 0.69452 1.24149 0.95712 0.94513 0.86172 1.19550 0.90029 0.75864 1.04517 1.44620 1.14525 1.05132 1.73627 1.15475 0.84239 0.79911 0.78239 1.90872 1.15495 1.84891 1.55537 1.41306 1.14036 1.03082 1.70209 1.19056 0.92474 0.85813 0.99776 1.21703 0.96841 0.96266 1.17300 1.23175 0.91547 0.93917 1.00633 1.48806 1.05802 1.08360 1.49756 1.19328 0.97896 0.70751 0.96670 1.21414 1.17263 0.92905 1.26943 0.92897 1.25735 0.99602 0.94893 0.97991 1.69997 1.42677 0.98655 1.44575 0.85352 0.78800 0.77765 0.78508 1.19887 1.19750 1.19720 1.77249 1.17138 0.95839 1.27780 1.70421 1.20057 1.15682 1.21277 0.89389 0.92572 0.93227 0.88037 0.89370 0.92569 0.93104 0.87506 0.86622 0.75214 0.74255 0.81175 0.78253 0.96132 0.92319 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.18 71.98 0.66 -0.82 16 2 C -0.01 -0.08 3.39 -11.54 -0.04 -0.12 16 3 C -0.14 -1.40 9.17 71.98 0.66 -0.74 16 4 C 0.22 3.99 6.65 138.63 0.92 4.92 16 5 N -0.32 -5.61 12.80 -51.33 -0.66 -6.27 16 6 N -0.46 -5.87 7.45 -50.71 -0.38 -6.25 16 7 H 0.46 2.98 8.96 -213.10 -1.91 1.07 16 8 C 0.27 4.00 7.60 138.22 1.05 5.05 16 9 C 0.23 2.96 6.30 85.63 0.54 3.50 16 10 N -0.72 -11.47 5.55 -482.31 -2.68 -14.14 16 11 C 0.72 18.15 8.53 179.06 1.53 19.68 16 12 O -0.59 -18.45 13.47 -4.01 -0.05 -18.50 16 13 N -0.63 -18.00 5.46 -321.23 -1.75 -19.75 16 14 C 0.28 10.98 8.11 133.31 1.08 12.06 16 15 C -0.29 -10.96 9.61 22.11 0.21 -10.75 16 16 C 0.06 2.15 11.44 83.52 0.96 3.10 16 17 N -0.35 -16.02 3.67 -351.84 -1.29 -17.31 16 18 C 0.27 14.05 6.26 85.63 0.54 14.59 16 19 C -0.55 -30.71 9.24 25.60 0.24 -30.47 16 20 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 21 C 0.02 1.00 5.46 84.66 0.46 1.46 16 22 N -0.92 -51.96 13.29 21.45 0.28 -51.67 16 23 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 N -0.35 -15.96 12.42 -54.42 -0.68 -16.64 16 28 N -0.54 -10.43 11.19 -179.73 -2.01 -12.44 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.41 5.12 8.48 -92.71 -0.79 4.33 16 39 H 0.42 9.57 8.84 -92.71 -0.82 8.75 16 40 H 0.17 6.14 5.91 -2.91 -0.02 6.13 16 41 H 0.20 6.06 8.06 -2.91 -0.02 6.03 16 42 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.06 2.95 8.07 -2.39 -0.02 2.93 16 44 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -74.34 382.92 -0.82 -75.16 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -2.44 Total: 20.95 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 8.80 Total: 21.46 kcal Atomic # 7 Polarization: -135.33 SS G_CDS: -9.16 Total: -144.48 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.05 Total: -18.50 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -74.34 -0.82 -75.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434710006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.197 kcal (2) G-P(sol) polarization free energy of solvation -74.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds