Wall clock time and date at job start Tue Mar 31 2020 17:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42901 * 114.00403 * 2 1 4 4 C 1.52992 * 109.47562 * 180.02562 * 3 2 1 5 5 C 1.53007 * 110.91761 * 56.09970 * 4 3 2 6 6 C 1.55446 * 111.11949 * 292.10366 * 4 3 2 7 7 C 1.54322 * 102.97261 * 206.46324 * 6 4 3 8 8 N 1.47022 * 107.27024 * 22.19110 * 7 6 4 9 9 C 1.34780 * 125.65266 * 181.07733 * 8 7 6 10 10 O 1.21270 * 120.00419 * 179.97438 * 9 8 7 11 11 C 1.50705 * 119.99362 * 359.97438 * 9 8 7 12 12 C 1.50699 * 109.46524 * 179.97438 * 11 9 8 13 13 C 1.38328 * 119.96651 * 90.00533 * 12 11 9 14 14 C 1.38278 * 120.13798 * 179.97438 * 13 12 11 15 15 C 1.38122 * 120.07152 * 359.97438 * 14 13 12 16 16 C 1.38869 * 119.92888 * 0.02562 * 15 14 13 17 17 O 1.35749 * 120.06594 * 180.02562 * 16 15 14 18 18 C 1.34824 * 117.00214 * 354.46141 * 17 16 15 19 19 H 1.08001 * 120.00154 * 5.05857 * 18 17 16 20 20 C 1.38660 * 120.00015 * 185.05963 * 18 17 16 21 21 N 1.31557 * 119.99829 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99974 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46994 * 60.00308 * 22 20 18 24 24 H 1.48501 * 109.46940 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47162 * 299.99981 * 22 20 18 26 26 C 1.38079 * 119.96421 * 269.72056 * 12 11 9 27 27 C 1.47424 * 108.70323 * 1.05985 * 8 7 6 28 28 H 1.09005 * 109.47364 * 300.00362 * 1 2 3 29 29 H 1.09003 * 109.47462 * 59.99915 * 1 2 3 30 30 H 1.09001 * 109.47475 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47250 * 59.99788 * 3 2 1 32 32 H 1.09000 * 109.47185 * 300.00671 * 3 2 1 33 33 H 1.08997 * 109.47222 * 183.90620 * 5 4 3 34 34 H 1.09002 * 109.46593 * 303.90046 * 5 4 3 35 35 H 1.08998 * 109.46861 * 63.90226 * 5 4 3 36 36 H 1.09000 * 110.70664 * 88.09221 * 6 4 3 37 37 H 1.08997 * 110.70720 * 324.83745 * 6 4 3 38 38 H 1.09002 * 109.88408 * 262.77796 * 7 6 4 39 39 H 1.09000 * 109.88527 * 141.60904 * 7 6 4 40 40 H 1.09004 * 109.46935 * 299.99406 * 11 9 8 41 41 H 1.08999 * 109.47522 * 59.99690 * 11 9 8 42 42 H 1.07992 * 119.92604 * 0.02562 * 13 12 11 43 43 H 1.07997 * 119.96841 * 180.02562 * 14 13 12 44 44 H 1.07998 * 120.03826 * 180.02562 * 15 14 13 45 45 H 0.97000 * 120.00128 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.03511 * 0.02562 * 26 12 11 47 47 H 1.09003 * 110.36857 * 94.70820 * 27 8 7 48 48 H 1.09000 * 110.36777 * 216.92170 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.0165 0.3471 -1.1873 6 6 4.0512 0.5962 1.3425 7 6 5.4814 1.1669 1.4442 8 7 5.5334 2.3678 0.5977 9 6 6.6176 3.1439 0.4009 10 8 6.5452 4.1148 -0.3222 11 6 7.9198 2.8051 1.0794 12 6 8.9650 3.8209 0.6962 13 6 9.1311 4.9628 1.4591 14 6 10.0894 5.8970 1.1110 15 6 10.8843 5.6921 0.0001 16 6 10.7199 4.5468 -0.7678 17 8 11.5000 4.3424 -1.8598 18 6 12.3352 5.3408 -2.2109 19 1 12.4218 6.2174 -1.5861 20 6 13.0831 5.2422 -3.3744 21 7 12.9780 4.1741 -4.1353 22 14 14.2398 6.6258 -3.8613 23 1 15.2567 6.8186 -2.7965 24 1 14.9181 6.2784 -5.1358 25 1 13.4645 7.8799 -4.0384 26 6 9.7597 3.6080 -0.4127 27 6 4.2032 2.5824 -0.0006 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 5.0971 0.2181 -1.1266 34 1 3.5322 -0.6292 -1.1630 35 1 3.7629 0.8555 -2.1174 36 1 4.0724 -0.4929 1.3033 37 1 3.4382 0.9413 2.1751 38 1 6.2008 0.4301 1.0868 39 1 5.7020 1.4323 2.4781 40 1 7.7801 2.8171 2.1604 41 1 8.2456 1.8132 0.7662 42 1 8.5117 5.1246 2.3288 43 1 10.2170 6.7873 1.7088 44 1 11.6328 6.4219 -0.2710 45 1 13.5008 4.1052 -4.9494 46 1 9.6323 2.7143 -1.0055 47 1 3.6233 3.2798 0.6039 48 1 4.3014 2.9559 -1.0199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460275214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:13 Heat of formation + Delta-G solvation = -83.195820 kcal Electronic energy + Delta-G solvation = -28121.826991 eV Core-core repulsion = 24142.617437 eV Total energy + Delta-G solvation = -3979.209554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.47773 -39.13388 -38.46789 -37.32424 -36.30458 -33.40193 -32.29867 -31.83373 -29.94715 -29.17245 -27.92724 -27.71569 -26.54067 -25.34451 -24.89635 -23.22057 -21.59215 -20.93440 -19.67433 -19.23639 -17.52732 -17.04072 -16.89975 -16.75576 -16.44398 -16.12330 -15.28394 -15.13737 -14.91235 -14.60290 -14.33700 -14.30333 -14.04543 -13.59586 -13.48596 -13.38095 -12.95512 -12.86082 -12.60515 -12.55449 -12.32874 -12.18261 -12.08213 -11.86769 -11.74596 -11.46722 -11.21490 -11.17072 -10.99407 -10.88675 -10.77549 -10.70453 -10.55196 -10.40143 -10.06477 -9.69251 -9.26811 -8.76532 -8.68923 -7.99154 -7.14180 -6.37217 -3.96133 2.15039 2.46568 2.79462 2.92780 3.17609 3.19689 3.21776 3.36080 4.02809 4.11052 4.20742 4.47725 4.60717 4.77088 4.83858 4.84976 4.94081 4.94667 4.99202 5.06512 5.10110 5.20021 5.22860 5.25846 5.27443 5.34884 5.50485 5.53978 5.56314 5.61793 5.71839 5.74792 5.77531 5.82280 5.84795 6.00329 6.08430 6.20283 6.25902 6.41331 6.72285 6.73669 6.99315 7.14236 7.34293 7.43910 7.47777 7.51801 7.90428 8.07845 8.31766 9.08426 9.79789 10.81083 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.002137 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.411719 B =13096.675679 C =13860.515868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.078 3.922 4 C -0.074 4.074 5 C -0.132 4.132 6 C -0.116 4.116 7 C 0.099 3.901 8 N -0.625 5.625 9 C 0.531 3.469 10 O -0.517 6.517 11 C -0.088 4.088 12 C -0.033 4.033 13 C -0.196 4.196 14 C -0.075 4.075 15 C -0.231 4.231 16 C 0.154 3.846 17 O -0.180 6.180 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.174 4.174 27 C 0.118 3.882 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.269 0.731 46 H 0.113 0.887 47 H 0.066 0.934 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.983 -8.698 12.389 26.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.001 3.999 4 C -0.075 4.075 5 C -0.189 4.189 6 C -0.154 4.154 7 C -0.024 4.024 8 N -0.362 5.362 9 C 0.320 3.680 10 O -0.390 6.390 11 C -0.127 4.127 12 C -0.034 4.034 13 C -0.215 4.215 14 C -0.093 4.093 15 C -0.250 4.250 16 C 0.101 3.899 17 O -0.084 6.084 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.193 4.193 27 C -0.005 4.005 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.144 0.856 45 H 0.079 0.921 46 H 0.131 0.869 47 H 0.084 0.916 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.676 -8.545 11.590 26.023 hybrid contribution 0.271 0.988 -0.177 1.040 sum -21.405 -7.558 11.413 25.407 Atomic orbital electron populations 1.22742 0.81005 1.02784 0.99991 1.87866 1.19539 1.27581 1.95404 1.22380 0.92130 0.84848 1.00540 1.21792 0.93038 0.95736 0.96903 1.21669 1.01351 0.99889 0.96006 1.22729 0.94595 1.01500 0.96533 1.22071 0.98091 0.87207 0.95029 1.48478 1.10243 1.28416 1.49048 1.20468 0.83924 0.82074 0.81537 1.90767 1.83950 1.27091 1.37235 1.20561 0.90951 1.00099 1.01120 1.18675 0.94787 0.94758 0.95174 1.20340 1.02697 0.96243 1.02255 1.20673 0.95027 0.97645 0.95964 1.21172 1.04829 1.00398 0.98628 1.19273 0.89908 0.92712 0.87984 1.83972 1.46005 1.40680 1.37698 1.21264 1.19293 0.98358 1.07760 0.89197 1.25273 0.98165 0.98174 0.94962 1.70033 1.39507 1.27026 1.13447 0.85793 0.79550 0.79869 0.78266 1.19558 1.20336 1.19543 1.19939 0.98833 1.01050 0.99488 1.22097 0.83461 0.95123 0.99813 0.94118 0.94063 0.89588 0.92920 0.92815 0.92194 0.91360 0.92455 0.89460 0.90587 0.91093 0.91221 0.88501 0.88352 0.87990 0.87489 0.85626 0.92083 0.86858 0.91616 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.05 9.80 -35.23 -0.35 -3.39 16 3 C 0.08 0.56 4.91 37.15 0.18 0.74 16 4 C -0.07 -0.60 0.75 -152.20 -0.11 -0.72 16 5 C -0.13 -1.17 8.48 37.16 0.32 -0.86 16 6 C -0.12 -0.80 5.83 -24.74 -0.14 -0.95 16 7 C 0.10 0.80 6.09 -3.06 -0.02 0.78 16 8 N -0.62 -7.35 3.31 -170.52 -0.57 -7.92 16 9 C 0.53 8.32 7.84 -10.98 -0.09 8.24 16 10 O -0.52 -10.66 16.29 5.57 0.09 -10.57 16 11 C -0.09 -1.25 5.02 -29.03 -0.15 -1.39 16 12 C -0.03 -0.63 4.37 -104.65 -0.46 -1.09 16 13 C -0.20 -3.68 9.70 -39.53 -0.38 -4.06 16 14 C -0.07 -1.48 10.04 -39.61 -0.40 -1.88 16 15 C -0.23 -5.35 9.17 -39.39 -0.36 -5.71 16 16 C 0.15 3.97 6.65 -39.10 -0.26 3.71 16 17 O -0.18 -5.36 9.76 0.07 0.00 -5.36 16 18 C -0.39 -11.33 9.49 30.89 0.29 -11.03 16 19 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -26.10 13.67 55.48 0.76 -25.34 16 22 Si 0.94 21.18 29.55 -169.99 -5.02 16.16 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 C -0.17 -3.93 9.64 -39.39 -0.38 -4.31 16 27 C 0.12 1.23 5.83 -2.53 -0.01 1.22 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.59 7.80 -51.93 -0.40 0.18 16 34 H 0.07 0.59 7.57 -51.93 -0.39 0.19 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.56 8.05 -51.93 -0.42 0.15 16 37 H 0.08 0.47 8.00 -51.93 -0.42 0.05 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 41 H 0.10 1.22 8.08 -51.93 -0.42 0.80 16 42 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.11 2.49 8.06 -52.49 -0.42 2.07 16 47 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 48 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -35.60 396.00 -7.73 -43.32 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.65 Total: 2.18 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -0.96 Total: -15.06 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.19 Total: -33.25 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.25 Total: -19.32 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.60 -7.73 -43.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460275214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.873 kcal (2) G-P(sol) polarization free energy of solvation -35.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds