Wall clock time and date at job start Tue Mar 31 2020 17:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42901 * 114.00403 * 2 1 4 4 C 1.52992 * 109.47562 * 180.02562 * 3 2 1 5 5 C 1.53007 * 110.91761 * 56.09970 * 4 3 2 6 6 C 1.55446 * 111.11949 * 292.10366 * 4 3 2 7 7 C 1.54322 * 102.97261 * 206.46324 * 6 4 3 8 8 N 1.47022 * 107.27024 * 22.19110 * 7 6 4 9 9 C 1.34780 * 125.65266 * 181.07733 * 8 7 6 10 10 O 1.21270 * 120.00419 * 179.97438 * 9 8 7 11 11 C 1.50705 * 119.99362 * 359.97438 * 9 8 7 12 12 C 1.50699 * 109.46524 * 179.97438 * 11 9 8 13 13 C 1.38328 * 119.96651 * 90.00533 * 12 11 9 14 14 C 1.38278 * 120.13798 * 179.97438 * 13 12 11 15 15 C 1.38122 * 120.07152 * 359.97438 * 14 13 12 16 16 C 1.38869 * 119.92888 * 0.02562 * 15 14 13 17 17 O 1.35749 * 120.06594 * 180.02562 * 16 15 14 18 18 C 1.34824 * 117.00214 * 354.46141 * 17 16 15 19 19 H 1.08001 * 120.00154 * 5.05857 * 18 17 16 20 20 C 1.38660 * 120.00015 * 185.05963 * 18 17 16 21 21 N 1.31557 * 119.99829 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99974 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46994 * 60.00308 * 22 20 18 24 24 H 1.48501 * 109.46940 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47162 * 299.99981 * 22 20 18 26 26 C 1.38079 * 119.96421 * 269.72056 * 12 11 9 27 27 C 1.47424 * 108.70323 * 1.05985 * 8 7 6 28 28 H 1.09005 * 109.47364 * 300.00362 * 1 2 3 29 29 H 1.09003 * 109.47462 * 59.99915 * 1 2 3 30 30 H 1.09001 * 109.47475 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47250 * 59.99788 * 3 2 1 32 32 H 1.09000 * 109.47185 * 300.00671 * 3 2 1 33 33 H 1.08997 * 109.47222 * 183.90620 * 5 4 3 34 34 H 1.09002 * 109.46593 * 303.90046 * 5 4 3 35 35 H 1.08998 * 109.46861 * 63.90226 * 5 4 3 36 36 H 1.09000 * 110.70664 * 88.09221 * 6 4 3 37 37 H 1.08997 * 110.70720 * 324.83745 * 6 4 3 38 38 H 1.09002 * 109.88408 * 262.77796 * 7 6 4 39 39 H 1.09000 * 109.88527 * 141.60904 * 7 6 4 40 40 H 1.09004 * 109.46935 * 299.99406 * 11 9 8 41 41 H 1.08999 * 109.47522 * 59.99690 * 11 9 8 42 42 H 1.07992 * 119.92604 * 0.02562 * 13 12 11 43 43 H 1.07997 * 119.96841 * 180.02562 * 14 13 12 44 44 H 1.07998 * 120.03826 * 180.02562 * 15 14 13 45 45 H 0.97000 * 120.00128 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.03511 * 0.02562 * 26 12 11 47 47 H 1.09003 * 110.36857 * 94.70820 * 27 8 7 48 48 H 1.09000 * 110.36777 * 216.92170 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.0165 0.3471 -1.1873 6 6 4.0512 0.5962 1.3425 7 6 5.4814 1.1669 1.4442 8 7 5.5334 2.3678 0.5977 9 6 6.6176 3.1439 0.4009 10 8 6.5452 4.1148 -0.3222 11 6 7.9198 2.8051 1.0794 12 6 8.9650 3.8209 0.6962 13 6 9.1311 4.9628 1.4591 14 6 10.0894 5.8970 1.1110 15 6 10.8843 5.6921 0.0001 16 6 10.7199 4.5468 -0.7678 17 8 11.5000 4.3424 -1.8598 18 6 12.3352 5.3408 -2.2109 19 1 12.4218 6.2174 -1.5861 20 6 13.0831 5.2422 -3.3744 21 7 12.9780 4.1741 -4.1353 22 14 14.2398 6.6258 -3.8613 23 1 15.2567 6.8186 -2.7965 24 1 14.9181 6.2784 -5.1358 25 1 13.4645 7.8799 -4.0384 26 6 9.7597 3.6080 -0.4127 27 6 4.2032 2.5824 -0.0006 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 5.0971 0.2181 -1.1266 34 1 3.5322 -0.6292 -1.1630 35 1 3.7629 0.8555 -2.1174 36 1 4.0724 -0.4929 1.3033 37 1 3.4382 0.9413 2.1751 38 1 6.2008 0.4301 1.0868 39 1 5.7020 1.4323 2.4781 40 1 7.7801 2.8171 2.1604 41 1 8.2456 1.8132 0.7662 42 1 8.5117 5.1246 2.3288 43 1 10.2170 6.7873 1.7088 44 1 11.6328 6.4219 -0.2710 45 1 13.5008 4.1052 -4.9494 46 1 9.6323 2.7143 -1.0055 47 1 3.6233 3.2798 0.6039 48 1 4.3014 2.9559 -1.0199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460275214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:12 Heat of formation + Delta-G solvation = -106.579899 kcal Electronic energy + Delta-G solvation = -28122.841000 eV Core-core repulsion = 24142.617437 eV Total energy + Delta-G solvation = -3980.223563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.46918 -40.70870 -39.57329 -38.31388 -37.84838 -34.41112 -34.26051 -33.29525 -30.91030 -30.64857 -29.11383 -28.33560 -27.56837 -27.12320 -25.79264 -24.01447 -23.26803 -22.59339 -20.48632 -20.30209 -19.39072 -18.70947 -18.09347 -17.46422 -17.15392 -16.79448 -16.65887 -16.43408 -16.28269 -16.07173 -15.72417 -15.51354 -15.18017 -15.01109 -14.73479 -14.42983 -14.22002 -14.02638 -13.83061 -13.61213 -13.51362 -13.36877 -12.98804 -12.95622 -12.78836 -12.66205 -12.49577 -12.39305 -12.33138 -12.22376 -12.13444 -11.85925 -11.62088 -11.49266 -11.21869 -10.98043 -10.79034 -10.56497 -9.65669 -9.64275 -8.98404 -8.47151 -6.15826 0.50593 0.75090 1.33138 1.44870 1.50137 1.62439 1.95428 2.17699 2.78669 2.83278 3.14064 3.42807 3.45715 3.55352 3.77895 3.87842 4.04298 4.09612 4.18658 4.20063 4.29258 4.32932 4.40982 4.45726 4.51227 4.56370 4.58459 4.61096 4.62607 4.68846 4.72758 4.75786 4.86119 4.91646 4.94171 5.02653 5.05762 5.12247 5.15507 5.21383 5.29389 5.33212 5.39454 5.64303 5.72064 5.74595 6.02291 6.22202 6.24316 6.48696 6.97038 7.17258 7.78685 8.76259 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.002137 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.411719 B =13096.675679 C =13860.515868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.080 3.920 4 C -0.069 4.069 5 C -0.129 4.129 6 C -0.107 4.107 7 C 0.091 3.909 8 N -0.618 5.618 9 C 0.528 3.472 10 O -0.581 6.581 11 C -0.084 4.084 12 C -0.026 4.026 13 C -0.180 4.180 14 C -0.073 4.073 15 C -0.246 4.246 16 C 0.111 3.889 17 O -0.234 6.234 18 C -0.415 4.415 19 H 0.101 0.899 20 C -0.026 4.026 21 N -0.922 5.922 22 Si 1.021 2.979 23 H -0.254 1.254 24 H -0.270 1.270 25 H -0.260 1.260 26 C -0.193 4.193 27 C 0.113 3.887 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.143 0.857 41 H 0.117 0.883 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.119 0.881 45 H 0.272 0.728 46 H 0.104 0.896 47 H 0.078 0.922 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.838 -8.523 15.950 29.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C 0.003 3.997 4 C -0.069 4.069 5 C -0.187 4.187 6 C -0.145 4.145 7 C -0.031 4.031 8 N -0.352 5.352 9 C 0.318 3.682 10 O -0.460 6.460 11 C -0.123 4.123 12 C -0.027 4.027 13 C -0.198 4.198 14 C -0.091 4.091 15 C -0.266 4.266 16 C 0.061 3.939 17 O -0.141 6.141 18 C -0.491 4.491 19 H 0.118 0.882 20 C -0.223 4.223 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.178 1.178 24 H -0.195 1.195 25 H -0.184 1.184 26 C -0.213 4.213 27 C -0.010 4.010 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.160 0.840 41 H 0.135 0.865 42 H 0.165 0.835 43 H 0.165 0.835 44 H 0.137 0.863 45 H 0.081 0.919 46 H 0.122 0.878 47 H 0.097 0.903 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.595 -8.420 15.230 29.319 hybrid contribution 0.539 0.828 -1.047 1.439 sum -23.056 -7.592 14.183 28.114 Atomic orbital electron populations 1.22897 0.79706 1.03710 1.00690 1.87827 1.20990 1.27795 1.95552 1.22344 0.91170 0.84923 1.01235 1.21711 0.93828 0.94021 0.97375 1.21633 1.00584 1.00250 0.96201 1.22735 0.93870 1.01944 0.95922 1.22409 0.99213 0.85817 0.95644 1.48480 1.09691 1.28533 1.48509 1.20625 0.85024 0.81676 0.80923 1.90749 1.85048 1.30090 1.40161 1.20652 0.88676 0.99276 1.03664 1.19190 0.94309 0.96003 0.93193 1.20967 1.01472 0.94783 1.02625 1.21141 0.93946 0.99231 0.94754 1.21306 1.05789 0.99588 0.99869 1.19874 0.91056 0.94889 0.88042 1.83932 1.48048 1.41970 1.40176 1.21793 1.19796 0.98888 1.08621 0.88214 1.26642 0.99918 1.01232 0.94476 1.70188 1.41616 1.29816 1.14428 0.84629 0.77094 0.76011 0.78328 1.17848 1.19458 1.18419 1.20201 0.99392 1.00581 1.01080 1.22195 0.83291 0.96899 0.98573 0.92995 0.93786 0.88637 0.91389 0.93030 0.93362 0.90859 0.93514 0.88532 0.88969 0.90315 0.88600 0.83961 0.86484 0.83490 0.83536 0.86320 0.91857 0.87786 0.90336 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.40 -5.50 9.80 -148.98 -1.46 -6.96 16 3 C 0.08 0.98 4.91 71.98 0.35 1.34 16 4 C -0.07 -0.99 0.75 -50.69 -0.04 -1.03 16 5 C -0.13 -2.24 8.48 71.98 0.61 -1.63 16 6 C -0.11 -1.11 5.83 31.88 0.19 -0.93 16 7 C 0.09 1.13 6.09 86.73 0.53 1.66 16 8 N -0.62 -13.22 3.31 -811.79 -2.69 -15.91 16 9 C 0.53 15.71 7.84 87.66 0.69 16.39 16 10 O -0.58 -24.13 16.29 -3.00 -0.05 -24.18 16 11 C -0.08 -2.12 5.02 29.10 0.15 -1.97 16 12 C -0.03 -0.96 4.37 -19.88 -0.09 -1.05 16 13 C -0.18 -6.13 9.70 22.30 0.22 -5.91 16 14 C -0.07 -2.72 10.04 22.25 0.22 -2.50 16 15 C -0.25 -11.63 9.17 22.39 0.21 -11.42 16 16 C 0.11 6.02 6.65 22.58 0.15 6.17 16 17 O -0.23 -15.02 9.76 -22.67 -0.22 -15.24 16 18 C -0.41 -25.48 9.49 67.92 0.64 -24.84 16 19 H 0.10 5.63 5.20 -2.91 -0.02 5.62 16 20 C -0.03 -1.52 5.49 84.83 0.47 -1.06 16 21 N -0.92 -58.88 13.67 21.61 0.30 -58.58 16 22 Si 1.02 44.73 29.55 68.60 2.03 46.75 16 23 H -0.25 -10.35 7.11 99.48 0.71 -9.65 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 C -0.19 -9.06 9.64 22.39 0.22 -8.84 16 27 C 0.11 2.24 5.83 86.86 0.51 2.74 16 28 H 0.05 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.93 7.80 -2.39 -0.02 0.91 16 34 H 0.07 1.19 7.57 -2.39 -0.02 1.17 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 0.90 8.05 -2.39 -0.02 0.88 16 37 H 0.09 0.72 8.00 -2.39 -0.02 0.70 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.14 2.35 8.09 -2.39 -0.02 2.33 16 41 H 0.12 2.57 8.08 -2.39 -0.02 2.55 16 42 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 43 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 44 H 0.12 5.63 5.64 -2.91 -0.02 5.61 16 45 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 46 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 47 H 0.08 1.36 8.04 -2.39 -0.02 1.34 16 48 H 0.05 1.38 7.95 -2.39 -0.02 1.36 16 Total: -1.00 -85.50 396.00 5.11 -80.39 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.94 Total: 25.12 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: 6.26 Total: -31.40 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -2.39 Total: -74.49 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -1.73 Total: -46.37 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -85.50 5.11 -80.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460275214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.185 kcal (2) G-P(sol) polarization free energy of solvation -85.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds