Wall clock time and date at job start Tue Mar 31 2020 17:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99773 * 2 1 4 4 H 1.48500 * 109.47356 * 269.99866 * 3 2 1 5 5 H 1.48497 * 109.47342 * 30.00467 * 3 2 1 6 6 H 1.48505 * 109.46847 * 150.00121 * 3 2 1 7 7 C 1.38803 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99773 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 N 1.46896 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.46956 * 110.99700 * 293.79427 * 16 15 14 18 18 C 1.53057 * 109.36567 * 176.81222 * 17 16 15 19 19 N 1.46954 * 109.36119 * 58.40464 * 18 17 16 20 20 C 1.46910 * 110.99727 * 176.81619 * 19 18 17 21 21 C 1.53004 * 109.46485 * 293.79553 * 20 19 18 22 22 C 1.53003 * 109.46765 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47175 * 180.02562 * 22 21 20 24 24 C 1.46955 * 110.88206 * 300.67565 * 19 18 17 25 25 C 1.46961 * 111.00124 * 170.00033 * 16 15 14 26 26 H 0.97000 * 120.00636 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 28 28 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 29 29 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 30 30 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 31 31 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 32 32 H 1.09004 * 109.47066 * 299.99732 * 15 14 13 33 33 H 1.09000 * 109.47665 * 59.99541 * 15 14 13 34 34 H 1.08999 * 109.49195 * 296.77993 * 17 16 15 35 35 H 1.08994 * 109.48776 * 56.84829 * 17 16 15 36 36 H 1.09001 * 109.48449 * 298.43650 * 18 17 16 37 37 H 1.09000 * 109.48760 * 178.37211 * 18 17 16 38 38 H 1.08995 * 109.47072 * 53.79775 * 20 19 18 39 39 H 1.09001 * 109.46751 * 173.80075 * 20 19 18 40 40 H 1.09003 * 109.47308 * 299.99823 * 21 20 19 41 41 H 1.08995 * 109.47119 * 60.00370 * 21 20 19 42 42 H 1.09003 * 109.46830 * 299.99830 * 22 21 20 43 43 H 1.08998 * 109.47180 * 59.99620 * 22 21 20 44 44 H 1.08999 * 109.49196 * 299.35935 * 24 19 18 45 45 H 1.08994 * 109.49111 * 179.28894 * 24 19 18 46 46 H 1.09000 * 109.48982 * 303.14979 * 25 16 15 47 47 H 1.09000 * 109.48854 * 63.21719 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5731 -3.2325 -0.0002 12 8 6.3440 -2.2962 -0.0006 13 7 6.0457 -4.4947 -0.0010 14 6 7.4907 -4.7357 0.0050 15 6 7.7564 -6.2424 0.0098 16 7 9.2053 -6.4841 0.0164 17 6 9.8211 -6.0278 -1.2374 18 6 11.3371 -6.2236 -1.1591 19 7 11.6332 -7.6423 -0.9162 20 6 13.0822 -7.8840 -0.9095 21 6 13.6476 -7.6320 -2.3087 22 6 15.1567 -7.8843 -2.3020 23 9 15.6738 -7.6533 -3.5812 24 6 11.0175 -8.0987 0.3377 25 6 9.5015 -7.9029 0.2593 26 1 -0.4851 0.8400 0.0004 27 1 3.6440 -3.4314 -0.8903 28 1 3.6433 -3.4318 0.8896 29 1 5.4291 -5.2434 -0.0011 30 1 7.9370 -4.2908 -0.8844 31 1 7.9303 -4.2865 0.8955 32 1 7.3102 -6.6872 0.8993 33 1 7.3168 -6.6917 -0.8807 34 1 9.4222 -6.6069 -2.0703 35 1 9.5982 -4.9716 -1.3887 36 1 11.7395 -5.6231 -0.3432 37 1 11.7929 -5.9126 -2.0991 38 1 13.5596 -7.2105 -0.1979 39 1 13.2770 -8.9165 -0.6195 40 1 13.1701 -8.3056 -3.0204 41 1 13.4528 -6.5995 -2.5988 42 1 15.6344 -7.2109 -1.5903 43 1 15.3511 -8.9168 -2.0121 44 1 11.4163 -7.5196 1.1706 45 1 11.2404 -9.1548 0.4889 46 1 9.0456 -8.2139 1.1993 47 1 9.0990 -8.5033 -0.5565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479926169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:56 Heat of formation + Delta-G solvation = -83.743914 kcal Electronic energy + Delta-G solvation = -25373.241462 eV Core-core repulsion = 21438.284539 eV Total energy + Delta-G solvation = -3934.956923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.06980 -40.00143 -39.18536 -36.93673 -34.68609 -33.02689 -32.43986 -31.40228 -30.45262 -28.70434 -26.53192 -25.59908 -24.38566 -24.30636 -22.06279 -21.73750 -20.56932 -20.17949 -17.87862 -17.11411 -16.93283 -16.40923 -16.28609 -15.97605 -15.95754 -15.55373 -15.31323 -15.13286 -14.97103 -14.87892 -14.56623 -14.35428 -14.04325 -13.64830 -13.59990 -13.22565 -12.79879 -12.63777 -12.54223 -12.29288 -12.05671 -11.87464 -11.74881 -11.60595 -11.55532 -11.27329 -11.26461 -11.06075 -11.00560 -10.95344 -10.60494 -9.85962 -9.54865 -9.02183 -8.96172 -8.94103 -8.72999 -8.50187 -6.91937 -6.29037 -4.00812 2.71618 2.97429 3.14569 3.24196 3.33264 3.50459 3.52389 3.82372 4.11097 4.22467 4.33024 4.33435 4.43757 4.45885 4.53550 4.64656 4.70744 4.73504 4.78807 4.87894 4.96281 4.98922 5.00897 5.08046 5.10110 5.15715 5.20289 5.30068 5.31857 5.42131 5.44656 5.52800 5.58323 5.64676 5.70243 5.78194 5.84647 6.00870 6.38815 6.44660 6.50692 6.65017 6.67400 7.58916 7.93947 8.41371 8.48410 9.17190 10.80173 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.027012 B = 0.001588 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.311836 B =17631.052786 C =18376.113715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.737 5.737 14 C 0.125 3.875 15 C 0.046 3.954 16 N -0.536 5.536 17 C 0.051 3.949 18 C 0.054 3.946 19 N -0.541 5.541 20 C 0.058 3.942 21 C -0.152 4.152 22 C 0.063 3.937 23 F -0.218 7.218 24 C 0.058 3.942 25 C 0.058 3.942 26 H 0.271 0.729 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.399 0.601 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.948 -21.960 -0.761 34.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.392 5.392 14 C 0.000 4.000 15 C -0.082 4.082 16 N -0.262 5.262 17 C -0.077 4.077 18 C -0.074 4.074 19 N -0.266 5.266 20 C -0.070 4.070 21 C -0.190 4.190 22 C 0.007 3.993 23 F -0.199 7.199 24 C -0.070 4.070 25 C -0.070 4.070 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.232 0.768 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 28.084 -20.284 -0.782 34.652 hybrid contribution -1.138 -0.725 -0.070 1.351 sum 26.946 -21.010 -0.852 34.179 Atomic orbital electron populations 1.69935 1.05920 1.27772 1.48069 1.24709 0.94443 0.98959 0.93156 0.86735 0.81909 0.83274 0.79942 1.19206 1.19931 1.15912 1.22322 0.88286 0.97544 1.58808 0.89389 1.84797 1.09257 1.00064 1.97427 1.23277 0.93955 1.04395 1.05823 1.20262 0.90589 0.82182 0.75250 1.90705 1.58797 1.42169 1.47618 1.45875 1.07365 1.08146 1.77853 1.21195 0.81263 0.94566 1.02962 1.22225 0.88103 0.96120 1.01735 1.62027 1.10646 1.18521 1.34985 1.22280 0.93770 1.01286 0.90354 1.22243 0.95771 0.87910 1.01505 1.62141 1.10619 1.18973 1.34821 1.21950 0.87633 1.01520 0.95893 1.22188 0.94276 1.03999 0.98545 1.21929 0.94058 1.02591 0.80690 1.92781 1.88306 1.96372 1.42488 1.22154 0.94079 1.00407 0.90363 1.22153 0.95444 0.88012 1.01366 0.91941 0.88502 0.88420 0.76757 0.91646 0.90737 0.89934 0.93908 0.93679 0.89498 0.93622 0.89909 0.94289 0.90372 0.89814 0.90548 0.90862 0.90717 0.93700 0.90151 0.89985 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.81 27.74 -169.99 -4.72 17.10 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 11 C 0.53 9.38 7.85 -10.98 -0.09 9.29 16 12 O -0.52 -11.24 15.86 5.55 0.09 -11.15 16 13 N -0.74 -9.14 5.56 -60.30 -0.33 -9.47 16 14 C 0.12 1.38 5.61 -4.04 -0.02 1.35 16 15 C 0.05 0.37 5.07 -3.83 -0.02 0.35 16 16 N -0.54 -4.34 4.71 -234.46 -1.10 -5.45 16 17 C 0.05 0.41 5.41 -3.76 -0.02 0.39 16 18 C 0.05 0.38 5.41 -3.77 -0.02 0.36 16 19 N -0.54 -3.50 4.71 -234.45 -1.10 -4.60 16 20 C 0.06 0.27 4.96 -3.82 -0.02 0.26 16 21 C -0.15 -0.74 5.60 -26.73 -0.15 -0.89 16 22 C 0.06 0.28 7.55 37.16 0.28 0.56 16 23 F -0.22 -1.74 17.36 2.25 0.04 -1.71 16 24 C 0.06 0.35 5.61 -3.76 -0.02 0.33 16 25 C 0.06 0.39 5.61 -3.76 -0.02 0.36 16 26 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 28 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 29 H 0.40 3.71 8.47 -40.82 -0.35 3.37 16 30 H 0.07 0.79 6.50 -51.93 -0.34 0.45 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.59 8.03 -51.93 -0.42 0.17 16 33 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.74 6.34 -51.93 -0.33 0.41 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.53 6.34 -51.93 -0.33 0.20 16 38 H 0.04 0.18 8.12 -51.93 -0.42 -0.24 16 39 H 0.08 0.29 8.03 -51.93 -0.42 -0.12 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.42 6.49 -51.93 -0.34 0.08 16 42 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 46 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 47 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -34.56 390.11 -10.13 -44.69 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -8.00 Total: -2.10 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 0.34 Total: -1.81 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: -1.77 Total: -45.30 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.10 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.56 -10.13 -44.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479926169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.056 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds