Wall clock time and date at job start Tue Mar 31 2020 17:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99773 * 2 1 4 4 H 1.48500 * 109.47356 * 269.99866 * 3 2 1 5 5 H 1.48497 * 109.47342 * 30.00467 * 3 2 1 6 6 H 1.48505 * 109.46847 * 150.00121 * 3 2 1 7 7 C 1.38803 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99773 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 N 1.46896 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.46956 * 110.99700 * 293.79427 * 16 15 14 18 18 C 1.53057 * 109.36567 * 176.81222 * 17 16 15 19 19 N 1.46954 * 109.36119 * 58.40464 * 18 17 16 20 20 C 1.46910 * 110.99727 * 176.81619 * 19 18 17 21 21 C 1.53004 * 109.46485 * 293.79553 * 20 19 18 22 22 C 1.53003 * 109.46765 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47175 * 180.02562 * 22 21 20 24 24 C 1.46955 * 110.88206 * 300.67565 * 19 18 17 25 25 C 1.46961 * 111.00124 * 170.00033 * 16 15 14 26 26 H 0.97000 * 120.00636 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 28 28 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 29 29 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 30 30 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 31 31 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 32 32 H 1.09004 * 109.47066 * 299.99732 * 15 14 13 33 33 H 1.09000 * 109.47665 * 59.99541 * 15 14 13 34 34 H 1.08999 * 109.49195 * 296.77993 * 17 16 15 35 35 H 1.08994 * 109.48776 * 56.84829 * 17 16 15 36 36 H 1.09001 * 109.48449 * 298.43650 * 18 17 16 37 37 H 1.09000 * 109.48760 * 178.37211 * 18 17 16 38 38 H 1.08995 * 109.47072 * 53.79775 * 20 19 18 39 39 H 1.09001 * 109.46751 * 173.80075 * 20 19 18 40 40 H 1.09003 * 109.47308 * 299.99823 * 21 20 19 41 41 H 1.08995 * 109.47119 * 60.00370 * 21 20 19 42 42 H 1.09003 * 109.46830 * 299.99830 * 22 21 20 43 43 H 1.08998 * 109.47180 * 59.99620 * 22 21 20 44 44 H 1.08999 * 109.49196 * 299.35935 * 24 19 18 45 45 H 1.08994 * 109.49111 * 179.28894 * 24 19 18 46 46 H 1.09000 * 109.48982 * 303.14979 * 25 16 15 47 47 H 1.09000 * 109.48854 * 63.21719 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5731 -3.2325 -0.0002 12 8 6.3440 -2.2962 -0.0006 13 7 6.0457 -4.4947 -0.0010 14 6 7.4907 -4.7357 0.0050 15 6 7.7564 -6.2424 0.0098 16 7 9.2053 -6.4841 0.0164 17 6 9.8211 -6.0278 -1.2374 18 6 11.3371 -6.2236 -1.1591 19 7 11.6332 -7.6423 -0.9162 20 6 13.0822 -7.8840 -0.9095 21 6 13.6476 -7.6320 -2.3087 22 6 15.1567 -7.8843 -2.3020 23 9 15.6738 -7.6533 -3.5812 24 6 11.0175 -8.0987 0.3377 25 6 9.5015 -7.9029 0.2593 26 1 -0.4851 0.8400 0.0004 27 1 3.6440 -3.4314 -0.8903 28 1 3.6433 -3.4318 0.8896 29 1 5.4291 -5.2434 -0.0011 30 1 7.9370 -4.2908 -0.8844 31 1 7.9303 -4.2865 0.8955 32 1 7.3102 -6.6872 0.8993 33 1 7.3168 -6.6917 -0.8807 34 1 9.4222 -6.6069 -2.0703 35 1 9.5982 -4.9716 -1.3887 36 1 11.7395 -5.6231 -0.3432 37 1 11.7929 -5.9126 -2.0991 38 1 13.5596 -7.2105 -0.1979 39 1 13.2770 -8.9165 -0.6195 40 1 13.1701 -8.3056 -3.0204 41 1 13.4528 -6.5995 -2.5988 42 1 15.6344 -7.2109 -1.5903 43 1 15.3511 -8.9168 -2.0121 44 1 11.4163 -7.5196 1.1706 45 1 11.2404 -9.1548 0.4889 46 1 9.0456 -8.2139 1.1993 47 1 9.0990 -8.5033 -0.5565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479926169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:55 Heat of formation + Delta-G solvation = -110.031665 kcal Electronic energy + Delta-G solvation = -25374.381385 eV Core-core repulsion = 21438.284539 eV Total energy + Delta-G solvation = -3936.096846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.163 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.56882 -40.81955 -40.27715 -37.59007 -35.71496 -34.67099 -33.61281 -31.94710 -31.64420 -29.67513 -27.87664 -27.17180 -24.95519 -24.81671 -22.79448 -22.18008 -21.86101 -20.77330 -19.88588 -18.00615 -17.56993 -17.33836 -17.23593 -17.03990 -16.90988 -16.58353 -16.21778 -16.06577 -15.87253 -15.62662 -15.50147 -15.26673 -14.97365 -14.92357 -14.70906 -14.42019 -14.22429 -13.63741 -13.34620 -13.14878 -13.11483 -13.01522 -12.68827 -12.60291 -12.54754 -12.27534 -12.19359 -12.07710 -11.86900 -11.75204 -11.61450 -11.39301 -11.17049 -11.04417 -10.53413 -10.15227 -9.47834 -9.28680 -8.99670 -8.51469 -6.22322 0.98706 1.31521 1.46742 1.55201 1.55512 2.12773 2.25405 2.69388 2.79013 2.86904 3.00319 3.69963 3.76561 3.83213 3.87817 3.91683 4.02509 4.06373 4.14696 4.20894 4.24167 4.30023 4.35849 4.42601 4.44844 4.47485 4.51171 4.54965 4.66359 4.75439 4.82909 4.86540 4.90027 4.92809 4.99046 5.02535 5.10180 5.25440 5.36143 5.70802 5.89458 5.91959 6.10294 6.11520 6.12754 6.45390 6.93869 7.18301 8.60844 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.027012 B = 0.001588 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.311836 B =17631.052786 C =18376.113715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.178 6.178 10 C -0.110 4.110 11 C 0.535 3.465 12 O -0.564 6.564 13 N -0.711 5.711 14 C 0.128 3.872 15 C 0.057 3.943 16 N -0.547 5.547 17 C 0.053 3.947 18 C 0.058 3.942 19 N -0.549 5.549 20 C 0.061 3.939 21 C -0.146 4.146 22 C 0.058 3.942 23 F -0.240 7.240 24 C 0.059 3.941 25 C 0.059 3.941 26 H 0.277 0.723 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.418 0.582 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.038 0.962 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.324 -23.616 -0.293 36.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.049 5.951 10 C -0.261 4.261 11 C 0.321 3.679 12 O -0.442 6.442 13 N -0.365 5.365 14 C 0.004 3.996 15 C -0.071 4.071 16 N -0.272 5.272 17 C -0.076 4.076 18 C -0.071 4.071 19 N -0.274 5.274 20 C -0.067 4.067 21 C -0.184 4.184 22 C 0.003 3.997 23 F -0.221 7.221 24 C -0.069 4.069 25 C -0.069 4.069 26 H 0.086 0.914 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.255 0.745 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.056 0.944 45 H 0.116 0.884 46 H 0.113 0.887 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 29.455 -22.007 -0.311 36.770 hybrid contribution -1.526 -0.394 -0.212 1.590 sum 27.929 -22.401 -0.524 35.806 Atomic orbital electron populations 1.70010 1.07280 1.29016 1.49136 1.25545 0.95250 1.02199 0.92874 0.85878 0.80687 0.79680 0.80200 1.18731 1.18309 1.16125 1.22466 0.90221 0.96732 1.58276 0.91860 1.84741 1.06467 1.06330 1.97597 1.23266 0.95693 0.99552 1.07627 1.19961 0.89454 0.83270 0.75236 1.90696 1.59402 1.43898 1.50229 1.45604 1.08574 1.06942 1.75390 1.21236 0.79718 0.96829 1.01829 1.22115 0.88490 0.93580 1.02928 1.62022 1.10519 1.19758 1.34915 1.22231 0.94438 1.00567 0.90314 1.22166 0.95104 0.88471 1.01315 1.62161 1.11768 1.18236 1.35206 1.21972 0.86594 1.02471 0.95659 1.22101 0.94679 1.03100 0.98503 1.22134 0.93583 1.04224 0.79739 1.92736 1.88599 1.96577 1.44213 1.22190 0.93601 1.01279 0.89822 1.22214 0.95997 0.86800 1.01852 0.91369 0.86708 0.86599 0.74497 0.92588 0.92183 0.88365 0.92986 0.94098 0.90552 0.94551 0.89650 0.93991 0.88858 0.90761 0.91563 0.89464 0.88754 0.94362 0.88434 0.88747 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.70 13.97 21.65 0.30 -55.40 16 2 C 0.05 2.74 5.50 84.86 0.47 3.21 16 3 Si 0.91 45.04 27.74 68.60 1.90 46.94 16 4 H -0.26 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 6 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 7 C -0.53 -30.75 10.04 67.96 0.68 -30.06 16 8 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 9 S -0.18 -8.98 18.55 -56.49 -1.05 -10.03 16 10 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 11 C 0.54 18.16 7.85 87.66 0.69 18.84 16 12 O -0.56 -24.23 15.86 -3.04 -0.05 -24.28 16 13 N -0.71 -16.07 5.56 -463.07 -2.57 -18.65 16 14 C 0.13 2.64 5.61 86.38 0.48 3.13 16 15 C 0.06 0.78 5.07 86.30 0.44 1.22 16 16 N -0.55 -7.93 4.71 -895.70 -4.22 -12.15 16 17 C 0.05 0.80 5.41 86.31 0.47 1.27 16 18 C 0.06 0.78 5.41 86.31 0.47 1.24 16 19 N -0.55 -6.25 4.71 -895.68 -4.22 -10.47 16 20 C 0.06 0.47 4.96 86.30 0.43 0.89 16 21 C -0.15 -1.27 5.60 30.60 0.17 -1.10 16 22 C 0.06 0.44 7.55 71.98 0.54 0.98 16 23 F -0.24 -3.70 17.36 44.97 0.78 -2.92 16 24 C 0.06 0.58 5.61 86.31 0.48 1.07 16 25 C 0.06 0.65 5.61 86.31 0.48 1.13 16 26 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 28 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 29 H 0.42 6.44 8.47 -92.71 -0.79 5.66 16 30 H 0.06 1.31 6.50 -2.38 -0.02 1.29 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.10 1.08 8.03 -2.38 -0.02 1.06 16 33 H 0.05 0.65 8.12 -2.39 -0.02 0.63 16 34 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 1.30 6.34 -2.39 -0.02 1.28 16 36 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.09 1.07 6.34 -2.39 -0.02 1.06 16 38 H 0.04 0.31 8.12 -2.39 -0.02 0.29 16 39 H 0.09 0.45 8.03 -2.39 -0.02 0.43 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.70 6.49 -2.39 -0.02 0.69 16 42 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.10 0.64 8.07 -2.39 -0.02 0.62 16 46 H 0.09 0.80 8.07 -2.39 -0.02 0.78 16 47 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -75.14 390.11 -2.74 -77.89 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.13 Total: 10.89 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 6.24 Total: -1.82 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -10.71 Total: -96.67 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.05 Total: -24.28 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.78 Total: -2.92 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.90 Total: 46.94 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.05 Total: -10.03 kcal Total: -75.14 -2.74 -77.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479926169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.146 kcal (2) G-P(sol) polarization free energy of solvation -75.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds