Wall clock time and date at job start Tue Mar 31 2020 17:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.53518 * 2 1 4 4 N 1.46501 * 109.47182 * 299.89774 * 3 2 1 5 5 C 1.34770 * 119.99966 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99990 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00100 * 179.97438 * 5 4 3 8 8 F 1.39902 * 109.46609 * 55.00403 * 7 5 4 9 9 F 1.39895 * 109.47205 * 175.00523 * 7 5 4 10 10 C 1.53114 * 109.50512 * 239.89784 * 2 1 3 11 11 C 1.53117 * 109.16110 * 297.71864 * 10 2 1 12 12 C 1.53043 * 109.30919 * 302.32235 * 11 10 2 13 13 N 1.46921 * 109.47916 * 59.16081 * 12 11 10 14 14 C 1.46893 * 110.98889 * 174.17912 * 13 12 11 15 15 C 1.50706 * 109.47358 * 190.62144 * 14 13 12 16 16 O 1.21284 * 119.99964 * 6.26613 * 15 14 13 17 17 N 1.34776 * 120.00031 * 186.26906 * 15 14 13 18 18 C 1.37096 * 120.00038 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99870 * 0.02562 * 18 17 15 20 20 C 1.38944 * 119.99947 * 179.97438 * 18 17 15 21 21 N 1.31419 * 120.00153 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00098 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46848 * 60.00375 * 22 20 18 24 24 H 1.48500 * 109.47350 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47224 * 300.00487 * 22 20 18 26 26 C 1.46852 * 111.22028 * 298.28759 * 13 12 11 27 27 H 1.08992 * 109.47198 * 180.10002 * 1 2 3 28 28 H 1.08999 * 109.46943 * 300.10393 * 1 2 3 29 29 H 1.09003 * 109.46886 * 60.10038 * 1 2 3 30 30 H 1.09003 * 109.47172 * 59.90297 * 3 2 1 31 31 H 1.09000 * 109.46975 * 179.90206 * 3 2 1 32 32 H 0.96998 * 119.99837 * 0.02562 * 4 3 2 33 33 H 1.09003 * 109.46992 * 295.01136 * 7 5 4 34 34 H 1.08997 * 109.52312 * 177.80689 * 10 2 1 35 35 H 1.09006 * 109.52116 * 57.62162 * 10 2 1 36 36 H 1.09003 * 109.50536 * 62.28487 * 11 10 2 37 37 H 1.08998 * 109.50122 * 182.36181 * 11 10 2 38 38 H 1.08998 * 109.45857 * 179.21595 * 12 11 10 39 39 H 1.09000 * 109.46084 * 299.18281 * 12 11 10 40 40 H 1.09002 * 109.46917 * 310.61787 * 14 13 12 41 41 H 1.09002 * 109.46987 * 70.61851 * 14 13 12 42 42 H 0.97004 * 120.00043 * 359.97438 * 17 15 14 43 43 H 0.97000 * 119.99540 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.45734 * 301.72343 * 26 13 12 45 45 H 1.09007 * 109.46137 * 181.75821 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4420 0.0000 4 7 1.5561 2.1324 -1.1974 5 6 1.8831 3.4223 -1.4106 6 8 2.5796 4.0114 -0.6115 7 6 1.3841 4.1325 -2.6427 8 9 -0.0101 4.0347 -2.7046 9 9 1.7551 5.4802 -2.5865 10 6 2.0413 -0.7239 -1.2486 11 6 1.5750 -2.1818 -1.2106 12 6 2.0846 -2.8429 0.0721 13 7 1.5675 -2.1135 1.2380 14 6 1.9222 -2.7995 2.4875 15 6 1.1653 -2.1790 3.6336 16 8 0.3222 -1.3345 3.4170 17 7 1.4254 -2.5626 4.8992 18 6 0.7372 -1.9979 5.9418 19 1 -0.0135 -1.2458 5.7489 20 6 1.0050 -2.3937 7.2464 21 7 1.9182 -3.3092 7.4811 22 14 0.0669 -1.6247 8.6670 23 1 -1.3850 -1.8898 8.5025 24 1 0.5362 -2.2139 9.9468 25 1 0.3040 -0.1589 8.6810 26 6 2.0409 -0.7234 1.2481 27 1 -0.3633 -1.0276 0.0018 28 1 -0.3633 0.5154 0.8891 29 1 -0.3633 0.5123 -0.8909 30 1 1.6775 1.9567 0.8891 31 1 3.1317 1.4407 0.0018 32 1 0.9987 1.6613 -1.8364 33 1 1.8203 3.6720 -3.5291 34 1 3.1305 -0.6902 -1.2689 35 1 1.6443 -0.2376 -2.1398 36 1 0.4856 -2.2161 -1.2297 37 1 1.9710 -2.7132 -2.0760 38 1 1.7423 -3.8771 0.1084 39 1 3.1743 -2.8205 0.0840 40 1 1.6616 -3.8550 2.4091 41 1 2.9933 -2.7018 2.6642 42 1 2.0995 -3.2384 5.0724 43 1 2.1053 -3.5852 8.3919 44 1 3.1308 -0.7110 1.2545 45 1 1.6668 -0.2188 2.1390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484149266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:06 Heat of formation + Delta-G solvation = -172.395152 kcal Electronic energy + Delta-G solvation = -29505.170493 eV Core-core repulsion = 25000.156188 eV Total energy + Delta-G solvation = -4505.014306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.51875 -47.54653 -40.42716 -39.36540 -37.92180 -35.75281 -33.98267 -33.29824 -31.85438 -31.21071 -28.91162 -27.56755 -26.94314 -25.68957 -24.71824 -23.05039 -21.62746 -21.11774 -19.19512 -19.01185 -18.38872 -18.14841 -17.88210 -17.74181 -16.15820 -16.03225 -15.77861 -15.46655 -14.96287 -14.90790 -14.65011 -14.44149 -14.32353 -14.14540 -13.87856 -13.80177 -13.61686 -13.52917 -13.36494 -13.00903 -12.78752 -12.50235 -12.29265 -11.97879 -11.90702 -11.51505 -11.35230 -11.29451 -11.06684 -10.96374 -10.62268 -10.47908 -10.44240 -10.27858 -10.23162 -10.18228 -9.48426 -9.45725 -8.43829 -7.97393 -7.87119 -6.41675 -3.82430 1.82713 2.27418 3.20283 3.26086 3.30352 3.41789 3.73364 3.90760 3.93605 4.15679 4.21791 4.30811 4.54158 4.58702 4.72408 5.02853 5.10449 5.14709 5.24872 5.27453 5.40282 5.46635 5.58123 5.61814 5.67421 5.75248 5.81331 5.86985 5.89555 5.94737 5.99641 6.06178 6.19274 6.21874 6.28842 6.41920 6.67571 6.88046 7.24241 7.36623 7.54063 7.55073 8.06254 8.61872 9.18303 9.54756 10.06401 10.76027 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.014076 B = 0.002650 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.728921 B =10562.200525 C =11929.978362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C 0.127 3.873 4 N -0.705 5.705 5 C 0.468 3.532 6 O -0.502 6.502 7 C 0.258 3.742 8 F -0.188 7.188 9 F -0.176 7.176 10 C -0.111 4.111 11 C -0.115 4.115 12 C 0.053 3.947 13 N -0.510 5.510 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.575 6.575 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.069 3.931 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.406 0.594 33 H 0.136 0.864 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.029 0.971 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.391 0.609 43 H 0.272 0.728 44 H 0.025 0.975 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 4.261 -22.693 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.066 4.066 3 C 0.004 3.996 4 N -0.358 5.358 5 C 0.249 3.751 6 O -0.375 6.375 7 C 0.200 3.800 8 F -0.169 7.169 9 F -0.157 7.157 10 C -0.149 4.149 11 C -0.153 4.153 12 C -0.075 4.075 13 N -0.234 5.234 14 C -0.085 4.085 15 C 0.228 3.772 16 O -0.458 6.458 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.060 4.060 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.242 0.758 33 H 0.153 0.847 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.224 0.776 43 H 0.082 0.918 44 H 0.043 0.957 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.805 5.203 -22.075 22.752 hybrid contribution 0.607 -0.332 0.669 0.962 sum 2.412 4.871 -21.407 22.086 Atomic orbital electron populations 1.21753 0.92610 1.03589 1.00712 1.20791 0.97773 0.92132 0.95900 1.21561 0.99239 0.91955 0.86875 1.45952 1.52535 1.11135 1.26184 1.21030 0.82780 0.83368 0.87944 1.90843 1.36521 1.65573 1.44601 1.21661 0.77587 0.80752 0.99958 1.93069 1.30284 1.96047 1.97514 1.93065 1.91010 1.34189 1.97480 1.21680 1.00388 0.96044 0.96742 1.21597 1.02219 0.94973 0.96523 1.22139 0.96804 0.97929 0.90640 1.61430 1.59693 1.01439 1.00801 1.21854 0.97794 0.98918 0.89922 1.19737 0.87172 0.86782 0.83522 1.90501 1.36103 1.35194 1.84051 1.41880 1.36271 1.37531 1.04508 1.19634 1.18263 1.20437 0.84453 0.87975 1.25249 0.97148 0.96742 0.98774 1.69606 1.32335 1.30480 1.21997 0.85935 0.79611 0.79199 0.79589 1.19897 1.21006 1.19912 1.22089 0.96009 0.89363 0.98490 0.90391 0.91861 0.94357 0.90239 0.90931 0.75791 0.84675 0.92098 0.92295 0.90540 0.91770 0.90784 0.95323 0.89257 0.93653 0.77557 0.91846 0.95661 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 7.86 37.16 0.29 -1.28 16 2 C -0.07 -0.73 0.53 -154.43 -0.08 -0.81 16 3 C 0.13 1.41 4.57 -4.04 -0.02 1.39 16 4 N -0.70 -6.27 4.98 -60.29 -0.30 -6.57 16 5 C 0.47 4.93 7.63 -10.99 -0.08 4.85 16 6 O -0.50 -7.60 16.62 5.56 0.09 -7.51 16 7 C 0.26 1.95 5.72 36.01 0.21 2.16 16 8 F -0.19 -1.60 17.32 2.25 0.04 -1.56 16 9 F -0.18 -1.86 16.95 2.25 0.04 -1.82 16 10 C -0.11 -0.96 4.58 -26.61 -0.12 -1.08 16 11 C -0.12 -1.05 5.74 -26.65 -0.15 -1.21 16 12 C 0.05 0.60 5.47 -3.79 -0.02 0.58 16 13 N -0.51 -7.62 3.63 -236.04 -0.86 -8.47 16 14 C 0.05 0.78 5.45 -4.98 -0.03 0.76 16 15 C 0.44 10.00 7.31 -10.98 -0.08 9.92 16 16 O -0.57 -14.69 14.29 5.55 0.08 -14.61 16 17 N -0.57 -13.99 5.29 -10.96 -0.06 -14.05 16 18 C -0.30 -8.19 9.68 -14.94 -0.14 -8.34 16 19 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 22 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.07 1.00 3.84 -3.83 -0.01 0.99 16 27 H 0.08 1.06 6.01 -51.93 -0.31 0.74 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.36 6.88 -51.93 -0.36 0.00 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.41 2.58 6.19 -40.82 -0.25 2.33 16 33 H 0.14 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.39 6.94 -51.93 -0.36 0.03 16 36 H 0.08 0.75 6.58 -51.93 -0.34 0.41 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.79 8.01 -51.93 -0.42 0.38 16 39 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 1.37 7.98 -51.93 -0.41 0.95 16 41 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 42 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 1.88 6.06 -51.93 -0.31 1.56 16 LS Contribution 368.13 15.07 5.55 5.55 Total: -1.00 -32.89 368.13 -6.47 -39.36 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.41 Total: 8.95 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -0.34 Total: 8.43 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.49 Total: -52.79 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.17 Total: -22.12 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.08 Total: -3.38 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.89 -6.47 -39.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484149266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.034 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds