Wall clock time and date at job start Tue Mar 31 2020 17:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.53518 * 2 1 4 4 N 1.46501 * 109.47182 * 299.89774 * 3 2 1 5 5 C 1.34770 * 119.99966 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99990 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00100 * 179.97438 * 5 4 3 8 8 F 1.39902 * 109.46609 * 55.00403 * 7 5 4 9 9 F 1.39895 * 109.47205 * 175.00523 * 7 5 4 10 10 C 1.53114 * 109.50512 * 239.89784 * 2 1 3 11 11 C 1.53117 * 109.16110 * 297.71864 * 10 2 1 12 12 C 1.53043 * 109.30919 * 302.32235 * 11 10 2 13 13 N 1.46921 * 109.47916 * 59.16081 * 12 11 10 14 14 C 1.46893 * 110.98889 * 174.17912 * 13 12 11 15 15 C 1.50706 * 109.47358 * 190.62144 * 14 13 12 16 16 O 1.21284 * 119.99964 * 6.26613 * 15 14 13 17 17 N 1.34776 * 120.00031 * 186.26906 * 15 14 13 18 18 C 1.37096 * 120.00038 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99870 * 0.02562 * 18 17 15 20 20 C 1.38944 * 119.99947 * 179.97438 * 18 17 15 21 21 N 1.31419 * 120.00153 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00098 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46848 * 60.00375 * 22 20 18 24 24 H 1.48500 * 109.47350 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47224 * 300.00487 * 22 20 18 26 26 C 1.46852 * 111.22028 * 298.28759 * 13 12 11 27 27 H 1.08992 * 109.47198 * 180.10002 * 1 2 3 28 28 H 1.08999 * 109.46943 * 300.10393 * 1 2 3 29 29 H 1.09003 * 109.46886 * 60.10038 * 1 2 3 30 30 H 1.09003 * 109.47172 * 59.90297 * 3 2 1 31 31 H 1.09000 * 109.46975 * 179.90206 * 3 2 1 32 32 H 0.96998 * 119.99837 * 0.02562 * 4 3 2 33 33 H 1.09003 * 109.46992 * 295.01136 * 7 5 4 34 34 H 1.08997 * 109.52312 * 177.80689 * 10 2 1 35 35 H 1.09006 * 109.52116 * 57.62162 * 10 2 1 36 36 H 1.09003 * 109.50536 * 62.28487 * 11 10 2 37 37 H 1.08998 * 109.50122 * 182.36181 * 11 10 2 38 38 H 1.08998 * 109.45857 * 179.21595 * 12 11 10 39 39 H 1.09000 * 109.46084 * 299.18281 * 12 11 10 40 40 H 1.09002 * 109.46917 * 310.61787 * 14 13 12 41 41 H 1.09002 * 109.46987 * 70.61851 * 14 13 12 42 42 H 0.97004 * 120.00043 * 359.97438 * 17 15 14 43 43 H 0.97000 * 119.99540 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.45734 * 301.72343 * 26 13 12 45 45 H 1.09007 * 109.46137 * 181.75821 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4420 0.0000 4 7 1.5561 2.1324 -1.1974 5 6 1.8831 3.4223 -1.4106 6 8 2.5796 4.0114 -0.6115 7 6 1.3841 4.1325 -2.6427 8 9 -0.0101 4.0347 -2.7046 9 9 1.7551 5.4802 -2.5865 10 6 2.0413 -0.7239 -1.2486 11 6 1.5750 -2.1818 -1.2106 12 6 2.0846 -2.8429 0.0721 13 7 1.5675 -2.1135 1.2380 14 6 1.9222 -2.7995 2.4875 15 6 1.1653 -2.1790 3.6336 16 8 0.3222 -1.3345 3.4170 17 7 1.4254 -2.5626 4.8992 18 6 0.7372 -1.9979 5.9418 19 1 -0.0135 -1.2458 5.7489 20 6 1.0050 -2.3937 7.2464 21 7 1.9182 -3.3092 7.4811 22 14 0.0669 -1.6247 8.6670 23 1 -1.3850 -1.8898 8.5025 24 1 0.5362 -2.2139 9.9468 25 1 0.3040 -0.1589 8.6810 26 6 2.0409 -0.7234 1.2481 27 1 -0.3633 -1.0276 0.0018 28 1 -0.3633 0.5154 0.8891 29 1 -0.3633 0.5123 -0.8909 30 1 1.6775 1.9567 0.8891 31 1 3.1317 1.4407 0.0018 32 1 0.9987 1.6613 -1.8364 33 1 1.8203 3.6720 -3.5291 34 1 3.1305 -0.6902 -1.2689 35 1 1.6443 -0.2376 -2.1398 36 1 0.4856 -2.2161 -1.2297 37 1 1.9710 -2.7132 -2.0760 38 1 1.7423 -3.8771 0.1084 39 1 3.1743 -2.8205 0.0840 40 1 1.6616 -3.8550 2.4091 41 1 2.9933 -2.7018 2.6642 42 1 2.0995 -3.2384 5.0724 43 1 2.1053 -3.5852 8.3919 44 1 3.1308 -0.7110 1.2545 45 1 1.6668 -0.2188 2.1390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484149266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:05 Heat of formation + Delta-G solvation = -197.268605 kcal Electronic energy + Delta-G solvation = -29506.249087 eV Core-core repulsion = 25000.156188 eV Total energy + Delta-G solvation = -4506.092899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.18244 -48.22716 -41.40256 -40.51187 -39.52860 -36.84978 -35.88653 -34.38892 -33.22196 -32.75419 -29.69186 -29.00855 -27.93559 -26.56770 -26.47766 -24.20931 -22.50308 -22.04099 -20.96393 -19.88959 -19.78098 -19.26301 -18.78099 -18.49717 -17.71387 -17.04312 -16.86550 -16.52589 -16.36626 -16.16105 -15.86761 -15.66264 -15.51081 -15.18495 -15.01389 -14.81916 -14.71326 -14.55661 -14.30111 -14.15438 -13.85358 -13.57537 -13.41070 -13.23861 -13.18030 -13.10783 -12.84453 -12.44574 -12.42340 -12.31043 -12.13831 -11.97896 -11.49299 -11.45557 -11.34417 -11.19413 -11.08709 -10.38195 -10.21665 -9.98022 -9.12328 -8.46032 -5.94040 0.99870 1.38517 1.40046 1.50521 1.51409 2.08838 2.28096 2.75820 2.91816 3.06831 3.21236 3.37113 3.57123 3.65217 3.73683 3.76766 3.86600 4.21484 4.24350 4.26144 4.34978 4.45856 4.47276 4.57431 4.61729 4.72263 4.80628 4.85322 4.86774 5.00034 5.07592 5.08827 5.16647 5.19936 5.37043 5.40331 5.41314 5.68608 5.92121 6.10191 6.12998 6.31050 6.62553 6.78877 7.14676 7.59321 8.15542 8.71351 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.014076 B = 0.002650 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.728921 B =10562.200525 C =11929.978362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.054 4.054 3 C 0.134 3.866 4 N -0.688 5.688 5 C 0.464 3.536 6 O -0.557 6.557 7 C 0.264 3.736 8 F -0.192 7.192 9 F -0.195 7.195 10 C -0.105 4.105 11 C -0.111 4.111 12 C 0.049 3.951 13 N -0.524 5.524 14 C 0.057 3.943 15 C 0.442 3.558 16 O -0.608 6.608 17 N -0.578 5.578 18 C -0.329 4.329 19 H 0.078 0.922 20 C -0.014 4.014 21 N -0.922 5.922 22 Si 0.989 3.011 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.070 3.930 27 H 0.065 0.935 28 H 0.022 0.978 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.422 0.578 33 H 0.200 0.800 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.039 0.961 40 H 0.111 0.889 41 H 0.061 0.939 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.031 0.969 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 3.412 -25.674 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.055 4.055 3 C 0.010 3.990 4 N -0.341 5.341 5 C 0.247 3.753 6 O -0.434 6.434 7 C 0.208 3.792 8 F -0.173 7.173 9 F -0.176 7.176 10 C -0.142 4.142 11 C -0.149 4.149 12 C -0.078 4.078 13 N -0.249 5.249 14 C -0.074 4.074 15 C 0.229 3.771 16 O -0.494 6.494 17 N -0.216 5.216 18 C -0.459 4.459 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.563 5.563 22 Si 0.813 3.187 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.200 1.200 26 C -0.059 4.059 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.261 0.739 33 H 0.216 0.784 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.129 0.871 41 H 0.079 0.921 42 H 0.228 0.772 43 H 0.086 0.914 44 H 0.049 0.951 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.202 4.315 -25.105 25.568 hybrid contribution 0.453 -0.077 1.565 1.631 sum 2.656 4.238 -23.540 24.065 Atomic orbital electron populations 1.21669 0.93412 1.02614 1.00285 1.20670 0.96899 0.91973 0.95987 1.21316 0.99234 0.91808 0.86690 1.45773 1.52011 1.10884 1.25460 1.21702 0.81836 0.83395 0.88370 1.90825 1.39119 1.66754 1.46731 1.22040 0.77356 0.79619 1.00180 1.93066 1.30806 1.95965 1.97457 1.93029 1.91186 1.35886 1.97518 1.21686 1.00999 0.95690 0.95874 1.21615 1.01930 0.95169 0.96174 1.22316 0.97491 0.98159 0.89838 1.61417 1.60662 1.01667 1.01125 1.21729 0.97517 0.99470 0.88669 1.20822 0.86457 0.85618 0.84221 1.90482 1.37640 1.36519 1.84736 1.41958 1.36647 1.38055 1.04951 1.19583 1.19062 1.21182 0.86084 0.90446 1.25987 0.97819 0.96998 1.00499 1.69668 1.32941 1.30981 1.22757 0.85041 0.78376 0.78260 0.76993 1.19676 1.19487 1.19960 1.21969 0.96164 0.89465 0.98254 0.91568 0.95873 0.91132 0.93635 0.90746 0.73857 0.78394 0.91203 0.89088 0.91153 0.88703 0.89938 0.94277 0.87110 0.92124 0.77176 0.91392 0.95062 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 7.86 71.98 0.57 -2.38 16 2 C -0.05 -1.17 0.53 -52.13 -0.03 -1.20 16 3 C 0.13 2.96 4.57 86.38 0.39 3.36 16 4 N -0.69 -10.98 4.98 -463.05 -2.31 -13.28 16 5 C 0.46 9.20 7.63 87.66 0.67 9.87 16 6 O -0.56 -17.14 16.62 -3.02 -0.05 -17.19 16 7 C 0.26 3.27 5.72 71.24 0.41 3.68 16 8 F -0.19 -2.75 17.32 44.97 0.78 -1.97 16 9 F -0.19 -3.83 16.95 44.97 0.76 -3.07 16 10 C -0.11 -1.42 4.58 30.67 0.14 -1.28 16 11 C -0.11 -1.60 5.74 30.65 0.18 -1.42 16 12 C 0.05 0.97 5.47 86.31 0.47 1.44 16 13 N -0.52 -15.37 3.63 -900.70 -3.27 -18.64 16 14 C 0.06 1.92 5.45 85.56 0.47 2.39 16 15 C 0.44 20.74 7.31 87.66 0.64 21.38 16 16 O -0.61 -32.93 14.29 -3.04 -0.04 -32.97 16 17 N -0.58 -29.73 5.29 -306.99 -1.62 -31.35 16 18 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 19 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 20 C -0.01 -0.73 5.50 84.92 0.47 -0.27 16 21 N -0.92 -50.31 13.05 21.66 0.28 -50.03 16 22 Si 0.99 43.67 29.55 68.60 2.03 45.69 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C 0.07 2.09 3.84 86.32 0.33 2.42 16 27 H 0.07 1.76 6.01 -2.39 -0.01 1.75 16 28 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 1.19 6.88 -2.39 -0.02 1.17 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.42 3.87 6.19 -92.71 -0.57 3.29 16 33 H 0.20 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 0.71 6.94 -2.38 -0.02 0.69 16 36 H 0.07 1.14 6.58 -2.39 -0.02 1.13 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 1.51 8.01 -2.39 -0.02 1.49 16 39 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.11 3.25 7.98 -2.39 -0.02 3.23 16 41 H 0.06 1.86 8.12 -2.39 -0.02 1.84 16 42 H 0.39 19.35 7.90 -92.71 -0.73 18.62 16 43 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 44 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.05 2.04 6.06 -2.38 -0.01 2.02 16 Total: -1.00 -77.35 368.13 1.81 -75.54 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.27 Total: 27.32 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 5.52 Total: 19.96 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -6.91 Total: -113.30 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.09 Total: -50.17 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 1.54 Total: -5.04 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -77.35 1.81 -75.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484149266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.727 kcal (2) G-P(sol) polarization free energy of solvation -77.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds