Wall clock time and date at job start Tue Mar 31 2020 17:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 F 1.39902 * 109.47348 * 2 1 4 4 F 1.39900 * 109.47116 * 240.00225 * 2 1 3 5 5 C 1.50696 * 109.47430 * 120.00034 * 2 1 3 6 6 O 1.21284 * 119.99660 * 344.48919 * 5 2 1 7 7 N 1.34778 * 120.00494 * 164.48460 * 5 2 1 8 8 C 1.46925 * 120.63483 * 176.45363 * 7 5 2 9 9 C 1.53190 * 108.77518 * 233.63522 * 8 7 5 10 10 C 1.53035 * 109.31512 * 305.36093 * 9 8 7 11 11 C 1.53006 * 109.45932 * 301.36464 * 10 9 8 12 12 N 1.46897 * 109.46262 * 181.38683 * 10 9 8 13 13 C 1.46903 * 110.99956 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47075 * 180.02562 * 13 12 10 15 15 O 1.21291 * 119.99650 * 0.02562 * 14 13 12 16 16 N 1.34771 * 119.99809 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99772 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99966 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99891 * 179.97438 * 17 16 14 20 20 N 1.31406 * 120.00337 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99897 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47266 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47229 * 120.00094 * 21 19 17 24 24 H 1.48504 * 109.47043 * 239.99937 * 21 19 17 25 25 C 1.53043 * 109.52468 * 61.37382 * 10 9 8 26 26 C 1.46927 * 120.62862 * 356.47908 * 7 5 2 27 27 H 1.08998 * 109.47368 * 300.00106 * 1 2 3 28 28 H 1.08999 * 109.47671 * 59.99814 * 1 2 3 29 29 H 1.09004 * 109.47470 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.58668 * 113.84188 * 8 7 5 31 31 H 1.09002 * 109.70148 * 353.48953 * 8 7 5 32 32 H 1.09000 * 109.49582 * 185.41135 * 9 8 7 33 33 H 1.09002 * 109.52987 * 65.33555 * 9 8 7 34 34 H 1.09001 * 109.47055 * 300.01913 * 11 10 9 35 35 H 1.09001 * 109.47394 * 60.02656 * 11 10 9 36 36 H 1.09000 * 109.46803 * 180.02562 * 11 10 9 37 37 H 1.00897 * 110.99888 * 56.02618 * 12 10 9 38 38 H 1.08998 * 109.47613 * 300.00527 * 13 12 10 39 39 H 1.09003 * 109.47123 * 60.00326 * 13 12 10 40 40 H 0.97001 * 120.00354 * 359.97438 * 16 14 13 41 41 H 0.97007 * 120.00761 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.49803 * 58.57937 * 25 10 9 43 43 H 1.09001 * 109.49940 * 178.67930 * 25 10 9 44 44 H 1.08992 * 109.58856 * 246.15504 * 26 7 5 45 45 H 1.09008 * 109.58488 * 6.44073 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9962 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2304 6 8 1.2802 -0.9217 2.1581 7 7 3.3173 -1.1110 1.2999 8 6 3.8419 -1.7351 2.5222 9 6 5.0949 -0.9736 2.9658 10 6 6.0936 -0.9237 1.8074 11 6 6.4506 -2.3490 1.3804 12 7 7.3101 -0.2230 2.2397 13 6 8.2942 -0.1562 1.1510 14 6 9.5260 0.5673 1.6311 15 8 9.5790 0.9856 2.7684 16 7 10.5686 0.7494 0.7967 17 6 11.6894 1.4071 1.2336 18 1 11.7366 1.7796 2.2462 19 6 12.7645 1.5945 0.3735 20 7 12.7072 1.1409 -0.8584 21 14 14.2919 2.4900 0.9690 22 1 14.1065 2.8974 2.3849 23 1 15.4672 1.5887 0.8625 24 1 14.5160 3.6965 0.1326 25 6 5.4690 -0.1788 0.6253 26 6 4.2203 -0.9315 0.1549 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 4.0985 -2.7750 2.3203 31 1 3.0894 -1.6906 3.3096 32 1 5.5487 -1.4836 3.8156 33 1 4.8215 0.0413 3.2545 34 1 6.8960 -2.8795 2.2220 35 1 5.5481 -2.8691 1.0595 36 1 7.1623 -2.3136 0.5556 37 1 7.7064 -0.6586 3.0590 38 1 8.5637 -1.1662 0.8422 39 1 7.8642 0.3799 0.3049 40 1 10.5263 0.4146 -0.1127 41 1 13.4579 1.2713 -1.4588 42 1 5.1914 0.8285 0.9357 43 1 6.1890 -0.1231 -0.1911 44 1 4.5078 -1.9058 -0.2400 45 1 3.7157 -0.3567 -0.6218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484912219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:27 Heat of formation + Delta-G solvation = -155.864084 kcal Electronic energy + Delta-G solvation = -29857.919552 eV Core-core repulsion = 25353.622087 eV Total energy + Delta-G solvation = -4504.297465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.74839 -47.63282 -40.74619 -39.09354 -37.94987 -35.57136 -33.91781 -32.26380 -31.68180 -31.27943 -31.09813 -28.01422 -26.96072 -25.63720 -24.24665 -24.00532 -22.70832 -20.76772 -19.28689 -19.04801 -18.24439 -17.96780 -17.90169 -17.34727 -16.47335 -16.05822 -15.45665 -15.33632 -15.23050 -14.95788 -14.63097 -14.58648 -14.27011 -14.03128 -13.93492 -13.92040 -13.71586 -13.55991 -13.17573 -13.01196 -12.91198 -12.53697 -12.42768 -12.33750 -12.07094 -12.01608 -11.82526 -11.56993 -11.41718 -11.26519 -11.06863 -10.83521 -10.47817 -10.35029 -10.23113 -10.18932 -9.52803 -9.13443 -8.47342 -8.06008 -7.96581 -6.42742 -3.83449 1.72854 2.16604 3.15628 3.17439 3.26337 3.33623 3.44653 3.87948 3.90252 4.00777 4.11675 4.25146 4.44866 4.55025 4.78245 4.86315 4.96240 4.99948 5.04204 5.09494 5.14026 5.23614 5.27096 5.32349 5.36792 5.41424 5.48503 5.56395 5.67835 5.75804 5.77983 5.94913 5.98425 6.03281 6.12116 6.24920 6.28362 6.75175 7.21569 7.35437 7.54588 7.63868 8.05809 8.60347 9.17277 9.53520 10.04963 10.75089 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.023149 B = 0.002376 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.241085 B =11782.517020 C =12287.251013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.281 3.719 3 F -0.179 7.179 4 F -0.184 7.184 5 C 0.487 3.513 6 O -0.509 6.509 7 N -0.587 5.587 8 C 0.110 3.890 9 C -0.120 4.120 10 C 0.113 3.887 11 C -0.190 4.190 12 N -0.656 5.656 13 C 0.046 3.954 14 C 0.441 3.559 15 O -0.583 6.583 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.125 4.125 26 C 0.085 3.915 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.351 0.649 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.732 -8.061 -1.923 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.241 3.759 3 F -0.160 7.160 4 F -0.165 7.165 5 C 0.270 3.730 6 O -0.384 6.384 7 N -0.319 5.319 8 C -0.011 4.011 9 C -0.159 4.159 10 C 0.022 3.978 11 C -0.249 4.249 12 N -0.288 5.288 13 C -0.087 4.087 14 C 0.226 3.774 15 O -0.467 6.467 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.163 4.163 26 C -0.038 4.038 27 H 0.119 0.881 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.171 0.829 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -23.143 -7.233 -0.938 24.265 hybrid contribution 1.455 -0.613 -0.690 1.723 sum -21.688 -7.846 -1.628 23.121 Atomic orbital electron populations 1.22612 0.88694 1.06368 1.06122 1.21378 0.95866 0.76350 0.82297 1.93118 1.90448 1.35900 1.96522 1.92980 1.89625 1.80821 1.53046 1.20732 0.83068 0.80628 0.88614 1.90763 1.54985 1.55155 1.37534 1.48188 1.09156 1.58303 1.16252 1.21817 0.96429 0.96494 0.86401 1.21915 0.94092 1.02121 0.97757 1.20873 0.91213 0.91306 0.94434 1.22723 1.02073 0.97707 1.02404 1.60232 1.05139 1.56385 1.07026 1.21766 0.92613 0.99225 0.95065 1.19832 0.84743 0.85814 0.86987 1.90525 1.82026 1.54613 1.19571 1.41869 1.13972 1.50737 1.13541 1.19748 0.91892 1.31729 0.99393 0.87897 1.25258 0.99547 0.98006 0.95170 1.69615 1.32793 1.46503 1.05452 0.85808 0.80732 0.78824 0.79034 1.19221 1.20777 1.20730 1.22033 0.95971 1.00052 0.98265 1.22443 0.91204 1.02185 0.87922 0.88123 0.89086 0.88734 0.90542 0.88576 0.90140 0.90213 0.92282 0.92010 0.91725 0.82939 0.93512 0.89465 0.77504 0.91930 0.90152 0.89793 0.90099 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 8.80 37.15 0.33 -0.87 16 2 C 0.28 2.57 1.79 -27.89 -0.05 2.52 16 3 F -0.18 -1.89 16.81 2.25 0.04 -1.85 16 4 F -0.18 -1.64 14.11 2.25 0.03 -1.60 16 5 C 0.49 5.28 7.19 -10.99 -0.08 5.21 16 6 O -0.51 -6.55 15.43 5.55 0.09 -6.46 16 7 N -0.59 -5.87 2.97 -172.77 -0.51 -6.38 16 8 C 0.11 1.03 5.95 -3.71 -0.02 1.00 16 9 C -0.12 -1.24 5.16 -26.61 -0.14 -1.38 16 10 C 0.11 1.28 0.71 -131.56 -0.09 1.19 16 11 C -0.19 -1.87 7.47 37.16 0.28 -1.59 16 12 N -0.66 -10.02 5.71 -101.17 -0.58 -10.60 16 13 C 0.05 0.77 5.38 -4.97 -0.03 0.74 16 14 C 0.44 10.25 7.82 -10.99 -0.09 10.17 16 15 O -0.58 -15.74 15.78 5.55 0.09 -15.65 16 16 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 17 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 18 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 21 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C -0.12 -1.36 4.71 -26.61 -0.13 -1.49 16 26 C 0.08 0.78 5.37 -3.71 -0.02 0.76 16 27 H 0.10 0.68 7.93 -51.93 -0.41 0.27 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.61 6.69 -51.93 -0.35 0.26 16 31 H 0.10 0.94 7.03 -51.93 -0.37 0.58 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.52 4.98 -51.93 -0.26 0.26 16 36 H 0.06 0.67 6.40 -51.93 -0.33 0.34 16 37 H 0.35 5.59 8.42 -39.29 -0.33 5.26 16 38 H 0.05 0.71 6.30 -51.93 -0.33 0.38 16 39 H 0.09 1.37 6.27 -51.93 -0.33 1.04 16 40 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 41 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 0.90 6.33 -51.93 -0.33 0.58 16 44 H 0.08 0.65 6.69 -51.93 -0.35 0.30 16 45 H 0.10 0.92 4.62 -51.92 -0.24 0.69 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -32.11 359.45 -6.05 -38.16 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -5.98 Total: 12.58 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -0.28 Total: 8.32 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.43 Total: -54.91 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: 0.17 Total: -22.11 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.07 Total: -3.46 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.11 -6.05 -38.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484912219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.701 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds