Wall clock time and date at job start Tue Mar 31 2020 17:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 F 1.39902 * 109.47348 * 2 1 4 4 F 1.39900 * 109.47116 * 240.00225 * 2 1 3 5 5 C 1.50696 * 109.47430 * 120.00034 * 2 1 3 6 6 O 1.21284 * 119.99660 * 344.48919 * 5 2 1 7 7 N 1.34778 * 120.00494 * 164.48460 * 5 2 1 8 8 C 1.46925 * 120.63483 * 176.45363 * 7 5 2 9 9 C 1.53190 * 108.77518 * 233.63522 * 8 7 5 10 10 C 1.53035 * 109.31512 * 305.36093 * 9 8 7 11 11 C 1.53006 * 109.45932 * 301.36464 * 10 9 8 12 12 N 1.46897 * 109.46262 * 181.38683 * 10 9 8 13 13 C 1.46903 * 110.99956 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47075 * 180.02562 * 13 12 10 15 15 O 1.21291 * 119.99650 * 0.02562 * 14 13 12 16 16 N 1.34771 * 119.99809 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99772 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99966 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99891 * 179.97438 * 17 16 14 20 20 N 1.31406 * 120.00337 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99897 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47266 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47229 * 120.00094 * 21 19 17 24 24 H 1.48504 * 109.47043 * 239.99937 * 21 19 17 25 25 C 1.53043 * 109.52468 * 61.37382 * 10 9 8 26 26 C 1.46927 * 120.62862 * 356.47908 * 7 5 2 27 27 H 1.08998 * 109.47368 * 300.00106 * 1 2 3 28 28 H 1.08999 * 109.47671 * 59.99814 * 1 2 3 29 29 H 1.09004 * 109.47470 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.58668 * 113.84188 * 8 7 5 31 31 H 1.09002 * 109.70148 * 353.48953 * 8 7 5 32 32 H 1.09000 * 109.49582 * 185.41135 * 9 8 7 33 33 H 1.09002 * 109.52987 * 65.33555 * 9 8 7 34 34 H 1.09001 * 109.47055 * 300.01913 * 11 10 9 35 35 H 1.09001 * 109.47394 * 60.02656 * 11 10 9 36 36 H 1.09000 * 109.46803 * 180.02562 * 11 10 9 37 37 H 1.00897 * 110.99888 * 56.02618 * 12 10 9 38 38 H 1.08998 * 109.47613 * 300.00527 * 13 12 10 39 39 H 1.09003 * 109.47123 * 60.00326 * 13 12 10 40 40 H 0.97001 * 120.00354 * 359.97438 * 16 14 13 41 41 H 0.97007 * 120.00761 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.49803 * 58.57937 * 25 10 9 43 43 H 1.09001 * 109.49940 * 178.67930 * 25 10 9 44 44 H 1.08992 * 109.58856 * 246.15504 * 26 7 5 45 45 H 1.09008 * 109.58488 * 6.44073 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9962 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2304 6 8 1.2802 -0.9217 2.1581 7 7 3.3173 -1.1110 1.2999 8 6 3.8419 -1.7351 2.5222 9 6 5.0949 -0.9736 2.9658 10 6 6.0936 -0.9237 1.8074 11 6 6.4506 -2.3490 1.3804 12 7 7.3101 -0.2230 2.2397 13 6 8.2942 -0.1562 1.1510 14 6 9.5260 0.5673 1.6311 15 8 9.5790 0.9856 2.7684 16 7 10.5686 0.7494 0.7967 17 6 11.6894 1.4071 1.2336 18 1 11.7366 1.7796 2.2462 19 6 12.7645 1.5945 0.3735 20 7 12.7072 1.1409 -0.8584 21 14 14.2919 2.4900 0.9690 22 1 14.1065 2.8974 2.3849 23 1 15.4672 1.5887 0.8625 24 1 14.5160 3.6965 0.1326 25 6 5.4690 -0.1788 0.6253 26 6 4.2203 -0.9315 0.1549 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 4.0985 -2.7750 2.3203 31 1 3.0894 -1.6906 3.3096 32 1 5.5487 -1.4836 3.8156 33 1 4.8215 0.0413 3.2545 34 1 6.8960 -2.8795 2.2220 35 1 5.5481 -2.8691 1.0595 36 1 7.1623 -2.3136 0.5556 37 1 7.7064 -0.6586 3.0590 38 1 8.5637 -1.1662 0.8422 39 1 7.8642 0.3799 0.3049 40 1 10.5263 0.4146 -0.1127 41 1 13.4579 1.2713 -1.4588 42 1 5.1914 0.8285 0.9357 43 1 6.1890 -0.1231 -0.1911 44 1 4.5078 -1.9058 -0.2400 45 1 3.7157 -0.3567 -0.6218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484912219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:26 Heat of formation + Delta-G solvation = -179.149310 kcal Electronic energy + Delta-G solvation = -29858.929275 eV Core-core repulsion = 25353.622087 eV Total energy + Delta-G solvation = -4505.307188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.48081 -48.37696 -41.61408 -40.34076 -39.47593 -36.65132 -35.88097 -33.35653 -33.03184 -32.42504 -32.11424 -28.94952 -28.24954 -26.77274 -25.72589 -24.84673 -23.65644 -21.60441 -21.01691 -19.95652 -19.85866 -18.98390 -18.85026 -18.19327 -17.81833 -17.00634 -16.79731 -16.44679 -16.26529 -16.09208 -15.95287 -15.75862 -15.49900 -15.36001 -14.97375 -14.68459 -14.66165 -14.57809 -14.38792 -13.94685 -13.58236 -13.53534 -13.45685 -13.40638 -13.25094 -13.04808 -12.96735 -12.90166 -12.65526 -12.42981 -12.36735 -12.18662 -12.11928 -11.76257 -11.51352 -11.37635 -11.00629 -10.34390 -10.01374 -9.95096 -9.27495 -8.47027 -5.95450 0.89864 1.36133 1.41300 1.41672 1.55541 2.05531 2.28720 2.42119 2.78590 2.86966 3.20313 3.23349 3.42013 3.48609 3.61384 3.71979 3.96921 4.05142 4.21299 4.24363 4.27155 4.43242 4.49350 4.50416 4.51046 4.56671 4.58356 4.63230 4.69499 4.83904 4.89060 4.93316 4.94772 5.12146 5.17862 5.26889 5.40878 5.41525 5.91376 5.94716 6.13915 6.42963 6.54048 6.60349 7.12968 7.56682 8.12255 8.70569 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.023149 B = 0.002376 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.241085 B =11782.517020 C =12287.251013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.280 3.720 3 F -0.189 7.189 4 F -0.181 7.181 5 C 0.481 3.519 6 O -0.533 6.533 7 N -0.588 5.588 8 C 0.114 3.886 9 C -0.115 4.115 10 C 0.114 3.886 11 C -0.185 4.185 12 N -0.673 5.673 13 C 0.063 3.937 14 C 0.437 3.563 15 O -0.625 6.625 16 N -0.574 5.574 17 C -0.332 4.332 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.275 1.275 23 H -0.270 1.270 24 H -0.271 1.271 25 C -0.124 4.124 26 C 0.090 3.910 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.345 0.655 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.293 -9.239 -3.096 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.241 3.759 3 F -0.170 7.170 4 F -0.162 7.162 5 C 0.265 3.735 6 O -0.411 6.411 7 N -0.319 5.319 8 C -0.008 4.008 9 C -0.153 4.153 10 C 0.024 3.976 11 C -0.243 4.243 12 N -0.304 5.304 13 C -0.069 4.069 14 C 0.225 3.775 15 O -0.511 6.511 16 N -0.211 5.211 17 C -0.462 4.462 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.162 4.162 26 C -0.032 4.032 27 H 0.116 0.884 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.164 0.836 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.121 0.879 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.715 -8.427 -2.148 25.259 hybrid contribution 1.597 -0.242 -0.296 1.642 sum -22.117 -8.669 -2.445 23.881 Atomic orbital electron populations 1.22665 0.86666 1.07256 1.06937 1.21497 0.97189 0.75599 0.81649 1.93100 1.90732 1.36660 1.96537 1.92982 1.89743 1.80703 1.52730 1.21064 0.83147 0.80421 0.88914 1.90748 1.55651 1.56176 1.38496 1.48316 1.09122 1.57871 1.16623 1.21839 0.95487 0.97297 0.86160 1.21852 0.94441 1.01204 0.97841 1.20964 0.89571 0.92189 0.94902 1.22655 1.02983 0.96289 1.02392 1.60219 1.05745 1.57970 1.06512 1.21593 0.90045 0.99603 0.95619 1.20954 0.85793 0.84669 0.86112 1.90493 1.83058 1.56132 1.21458 1.41933 1.14078 1.51075 1.14002 1.19673 0.93849 1.33779 0.98878 0.90504 1.26012 1.01787 0.98231 0.95207 1.69667 1.33782 1.46635 1.05990 0.84896 0.77376 0.78062 0.78160 1.19926 1.19502 1.19638 1.22009 0.96903 0.99153 0.98157 1.22480 0.90119 1.03075 0.87553 0.88440 0.87157 0.87827 0.88295 0.89139 0.89195 0.92465 0.92048 0.89949 0.91908 0.83559 0.91068 0.87911 0.76948 0.91289 0.92363 0.89399 0.87931 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 8.80 71.98 0.63 -1.45 16 2 C 0.28 4.77 1.79 29.84 0.05 4.82 16 3 F -0.19 -3.86 16.81 44.97 0.76 -3.10 16 4 F -0.18 -2.86 14.11 44.97 0.63 -2.23 16 5 C 0.48 9.91 7.19 87.66 0.63 10.54 16 6 O -0.53 -13.35 15.43 -3.04 -0.05 -13.40 16 7 N -0.59 -10.80 2.97 -818.90 -2.43 -13.24 16 8 C 0.11 1.91 5.95 86.36 0.51 2.43 16 9 C -0.11 -2.26 5.16 30.67 0.16 -2.10 16 10 C 0.11 2.42 0.71 3.56 0.00 2.42 16 11 C -0.18 -3.08 7.47 71.98 0.54 -2.55 16 12 N -0.67 -20.14 5.71 -474.00 -2.71 -22.85 16 13 C 0.06 2.08 5.38 85.56 0.46 2.54 16 14 C 0.44 20.57 7.82 87.66 0.69 21.26 16 15 O -0.62 -34.65 15.78 -3.06 -0.05 -34.69 16 16 N -0.57 -29.20 5.29 -306.99 -1.62 -30.82 16 17 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 18 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 19 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 20 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 21 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 C -0.12 -2.53 4.71 30.67 0.14 -2.38 16 26 C 0.09 1.45 5.37 86.36 0.46 1.92 16 27 H 0.10 1.22 7.93 -2.39 -0.02 1.20 16 28 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.10 1.25 6.69 -2.39 -0.02 1.24 16 31 H 0.09 1.68 7.03 -2.39 -0.02 1.66 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.05 4.98 -2.39 -0.01 1.04 16 36 H 0.06 1.10 6.40 -2.39 -0.02 1.08 16 37 H 0.35 10.93 8.42 -89.70 -0.76 10.17 16 38 H 0.07 2.02 6.30 -2.39 -0.02 2.00 16 39 H 0.10 3.08 6.27 -2.39 -0.01 3.06 16 40 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 41 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.09 1.72 6.33 -2.39 -0.02 1.71 16 44 H 0.10 1.27 6.69 -2.39 -0.02 1.25 16 45 H 0.10 1.69 4.62 -2.38 -0.01 1.68 16 Total: -1.00 -70.09 359.45 1.98 -68.11 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: -0.43 Total: 37.07 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 5.56 Total: 19.21 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -6.48 Total: -115.91 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -0.10 Total: -48.10 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 1.39 Total: -5.33 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -70.09 1.98 -68.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484912219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.036 kcal (2) G-P(sol) polarization free energy of solvation -70.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds