Wall clock time and date at job start Tue Mar 31 2020 18:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35241 * 126.06962 * 2 1 4 4 C 1.50699 * 126.06582 * 359.97438 * 3 2 1 5 5 N 1.46906 * 109.46993 * 269.99727 * 4 3 2 6 6 C 1.40400 * 107.86433 * 180.02562 * 3 2 1 7 7 N 1.40189 * 125.97042 * 179.97438 * 6 3 2 8 8 C 1.34777 * 120.00116 * 179.97438 * 7 6 3 9 9 O 1.21603 * 119.99916 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00128 * 180.02562 * 8 7 6 11 11 C 1.40186 * 119.99745 * 180.27816 * 10 8 7 12 12 C 1.40400 * 125.97490 * 359.43676 * 11 10 8 13 13 C 1.35239 * 107.86845 * 179.86647 * 12 11 10 14 14 N 1.34968 * 107.85956 * 0.39102 * 13 12 11 15 15 C 1.46494 * 125.98026 * 179.74843 * 14 13 12 16 16 C 1.50705 * 109.47098 * 124.97744 * 15 14 13 17 17 H 1.07990 * 120.00088 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99817 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00207 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99960 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47407 * 59.99540 * 20 18 16 22 22 H 1.48499 * 109.47426 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47183 * 299.99642 * 20 18 16 24 24 N 1.31208 * 125.96918 * 179.74638 * 11 10 8 25 25 N 1.31208 * 108.05909 * 0.26212 * 6 3 2 26 26 N 1.34967 * 126.06693 * 180.02562 * 2 1 3 27 27 C 1.46496 * 125.97896 * 0.02686 * 26 2 1 28 28 H 1.08997 * 109.47386 * 89.99895 * 1 2 3 29 29 H 1.08999 * 109.47007 * 209.99925 * 1 2 3 30 30 H 1.08999 * 109.46898 * 329.99418 * 1 2 3 31 31 H 1.09000 * 109.47328 * 29.99821 * 4 3 2 32 32 H 1.09003 * 109.46843 * 150.00232 * 4 3 2 33 33 H 1.00895 * 110.99801 * 180.02562 * 5 4 3 34 34 H 1.00900 * 111.00166 * 303.95803 * 5 4 3 35 35 H 0.97000 * 120.00335 * 0.02562 * 7 6 3 36 36 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 37 37 H 1.07998 * 126.06748 * 0.02562 * 12 11 10 38 38 H 1.08007 * 126.07492 * 180.11339 * 13 12 11 39 39 H 1.08991 * 109.47488 * 244.98233 * 15 14 13 40 40 H 1.09009 * 109.47102 * 4.98015 * 15 14 13 41 41 H 0.96999 * 120.00165 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.46762 * 90.00388 * 27 26 2 43 43 H 1.09001 * 109.47474 * 210.00584 * 27 26 2 44 44 H 1.08996 * 109.47036 * 330.00697 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 1.8410 2.5275 -0.0005 5 7 1.6913 2.9932 -1.3858 6 6 3.6370 0.6545 -0.0006 7 7 4.7737 1.4750 -0.0013 8 6 6.0032 0.9231 -0.0013 9 8 6.1266 -0.2866 -0.0012 10 7 7.0960 1.7120 -0.0015 11 6 8.3749 1.1378 -0.0074 12 6 8.6620 -0.2365 -0.0023 13 6 10.0067 -0.3796 -0.0138 14 7 10.5542 0.8541 -0.0171 15 6 11.9869 1.1598 -0.0236 16 6 12.3029 2.0606 -1.1899 17 1 11.5154 2.3742 -1.8589 18 6 13.5976 2.4842 -1.4026 19 7 14.5567 2.1027 -0.5876 20 14 13.9893 3.6012 -2.8477 21 1 13.2151 4.8622 -2.7227 22 1 15.4416 3.9111 -2.8545 23 1 13.6224 2.9187 -4.1146 24 7 9.5129 1.7909 -0.0129 25 7 3.6336 -0.6575 -0.0066 26 7 2.3016 -1.0910 -0.0005 27 6 1.8500 -2.4846 -0.0017 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 0.8822 2.6005 0.5129 32 1 2.5765 3.1464 0.5134 33 1 1.3823 3.9533 -1.4130 34 1 2.5504 2.8753 -1.9017 35 1 4.6753 2.4400 -0.0010 36 1 6.9976 2.6769 -0.0019 37 1 7.9375 -1.0374 0.0065 38 1 10.5468 -1.3149 -0.0153 39 1 12.2557 1.6612 0.9060 40 1 12.5555 0.2343 -0.1148 41 1 15.4675 2.4010 -0.7371 42 1 1.7385 -2.8294 -1.0296 43 1 2.5844 -3.1050 0.5121 44 1 0.8912 -2.5562 0.5116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579532716.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:52 Heat of formation + Delta-G solvation = 148.865376 kcal Electronic energy + Delta-G solvation = -27571.220945 eV Core-core repulsion = 23563.119479 eV Total energy + Delta-G solvation = -4008.101466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71268 -40.65583 -39.48633 -35.78256 -35.01118 -34.55662 -33.37630 -32.43241 -31.77969 -30.77839 -29.27299 -27.84146 -26.86542 -26.35889 -24.35320 -23.31931 -22.35254 -20.81082 -20.45524 -19.86532 -19.29383 -17.96207 -17.12538 -16.56363 -16.50528 -16.29879 -16.03493 -15.59254 -15.35652 -14.93358 -14.79792 -14.47347 -14.17000 -13.91811 -13.82550 -13.67395 -13.38731 -12.90878 -12.78157 -12.68872 -12.35919 -12.30903 -12.20493 -12.15884 -11.77858 -11.09830 -10.89188 -10.81246 -10.61520 -10.38505 -10.23919 -10.01473 -9.65318 -9.49116 -9.06870 -8.76608 -8.61440 -8.33718 -8.08296 -7.40833 -6.22618 -4.27667 1.69395 1.89474 2.32920 2.57937 2.80232 3.23521 3.26585 3.29717 3.34115 3.53788 3.86130 4.15686 4.24905 4.34658 4.46910 4.48863 4.70715 4.85721 4.94606 4.95686 5.11276 5.12307 5.22368 5.28430 5.35167 5.46184 5.56962 5.68077 5.81928 5.92789 6.19601 6.42098 6.55776 6.66947 6.79697 6.84900 6.86916 6.95276 7.08972 7.12176 7.43618 7.59406 7.71861 7.86234 7.98552 8.08160 8.53421 8.66370 8.81957 9.37709 10.86013 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.002160 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.712299 B =12958.745692 C =13843.097353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.119 3.881 3 C -0.261 4.261 4 C 0.145 3.855 5 N -0.848 5.848 6 C 0.325 3.675 7 N -0.648 5.648 8 C 0.706 3.294 9 O -0.520 6.520 10 N -0.639 5.639 11 C 0.275 3.725 12 C -0.285 4.285 13 C 0.052 3.948 14 N -0.320 5.320 15 C 0.259 3.741 16 C -0.528 4.528 17 H 0.068 0.932 18 C 0.062 3.938 19 N -0.895 5.895 20 Si 0.908 3.092 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 N -0.306 5.306 25 N -0.269 5.269 26 N -0.374 5.374 27 C 0.105 3.895 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.339 0.661 34 H 0.341 0.659 35 H 0.412 0.588 36 H 0.407 0.593 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.268 0.732 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.028 -2.558 2.555 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.010 4.010 3 C -0.276 4.276 4 C 0.014 3.986 5 N -0.378 5.378 6 C 0.066 3.934 7 N -0.301 5.301 8 C 0.404 3.596 9 O -0.389 6.389 10 N -0.289 5.289 11 C 0.022 3.978 12 C -0.316 4.316 13 C -0.098 4.098 14 N -0.102 5.102 15 C 0.141 3.859 16 C -0.567 4.567 17 H 0.086 0.914 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 N -0.137 5.137 25 N -0.096 5.096 26 N -0.157 5.157 27 C -0.036 4.036 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.248 0.752 36 H 0.242 0.758 37 H 0.179 0.821 38 H 0.185 0.815 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -28.817 -4.268 2.540 29.241 hybrid contribution 0.308 2.187 -0.523 2.270 sum -28.509 -2.081 2.017 28.656 Atomic orbital electron populations 1.20446 0.87155 1.03458 1.03624 1.20703 0.94517 0.86392 0.99405 1.19135 0.89573 0.95729 1.23116 1.19861 0.99745 0.89555 0.89476 1.58757 1.38526 1.26780 1.13708 1.18659 0.85430 0.89713 0.99578 1.41798 1.01863 1.08844 1.77635 1.15599 0.79571 0.85523 0.78865 1.90984 1.83700 1.11352 1.52892 1.41230 1.01726 1.09391 1.76589 1.18713 0.83968 0.91781 1.03379 1.21519 0.94909 0.95407 1.19792 1.22551 0.93915 0.90898 1.02441 1.49060 1.07232 1.01950 1.51934 1.19735 0.68402 0.98495 0.99232 1.21220 0.94161 1.30142 1.11138 0.91366 1.24948 0.95769 0.96344 0.97057 1.69910 1.01254 1.44945 1.37270 0.86382 0.77112 0.80859 0.82105 1.19966 1.21060 1.20047 1.77319 0.92596 1.15399 1.28371 1.78148 0.94322 1.09114 1.28040 1.48276 1.03494 1.05909 1.57993 1.21809 1.00715 0.77731 1.03394 0.89755 0.91291 0.89691 0.90336 0.95301 0.84791 0.84639 0.75160 0.75832 0.82145 0.81475 0.93735 0.92520 0.92288 0.90754 0.89066 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 9.90 36.01 0.36 -0.10 16 2 C 0.12 1.11 6.92 -82.28 -0.57 0.54 16 3 C -0.26 -2.64 5.63 -104.88 -0.59 -3.23 16 4 C 0.14 1.01 6.90 -4.97 -0.03 0.98 16 5 N -0.85 -5.57 9.61 -11.40 -0.11 -5.68 16 6 C 0.32 4.30 7.78 -154.37 -1.20 3.10 16 7 N -0.65 -7.82 5.45 -15.51 -0.08 -7.91 16 8 C 0.71 11.37 8.50 -86.92 -0.74 10.63 16 9 O -0.52 -10.33 12.19 5.27 0.06 -10.27 16 10 N -0.64 -10.24 5.45 -15.51 -0.08 -10.32 16 11 C 0.28 5.68 8.11 -154.37 -1.25 4.43 16 12 C -0.28 -5.90 9.60 -39.84 -0.38 -6.29 16 13 C 0.05 1.07 11.44 -17.24 -0.20 0.87 16 14 N -0.32 -7.57 3.67 -62.56 -0.23 -7.80 16 15 C 0.26 6.65 6.26 -5.19 -0.03 6.62 16 16 C -0.53 -14.81 9.24 -34.44 -0.32 -15.13 16 17 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.90 -25.49 13.29 55.43 0.74 -24.76 16 20 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 N -0.31 -7.13 12.42 31.44 0.39 -6.74 16 25 N -0.27 -4.12 10.80 31.44 0.34 -3.78 16 26 N -0.37 -4.15 4.01 -63.90 -0.26 -4.41 16 27 C 0.10 0.72 11.27 59.84 0.67 1.39 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.24 7.07 -51.93 -0.37 -0.13 16 30 H 0.08 0.35 7.14 -51.93 -0.37 -0.02 16 31 H 0.08 0.46 7.14 -51.93 -0.37 0.09 16 32 H 0.03 0.18 7.70 -51.93 -0.40 -0.22 16 33 H 0.34 1.54 9.08 -39.29 -0.36 1.18 16 34 H 0.34 2.43 8.99 -39.29 -0.35 2.07 16 35 H 0.41 3.34 8.23 -40.82 -0.34 3.01 16 36 H 0.41 5.10 8.84 -40.82 -0.36 4.73 16 37 H 0.16 3.33 5.91 -52.49 -0.31 3.02 16 38 H 0.17 2.83 8.06 -52.48 -0.42 2.41 16 39 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.43 8.07 -51.92 -0.42 1.01 16 41 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.31 7.04 -51.93 -0.37 -0.06 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -37.21 376.70 -8.63 -45.84 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.67 Total: 8.24 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -4.38 Total: 5.43 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: 0.70 Total: -71.39 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.06 Total: -10.27 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.21 -8.63 -45.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579532716.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.704 kcal (2) G-P(sol) polarization free energy of solvation -37.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds