Wall clock time and date at job start Tue Mar 31 2020 18:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35241 * 126.06962 * 2 1 4 4 C 1.50699 * 126.06582 * 359.97438 * 3 2 1 5 5 N 1.46906 * 109.46993 * 269.99727 * 4 3 2 6 6 C 1.40400 * 107.86433 * 180.02562 * 3 2 1 7 7 N 1.40189 * 125.97042 * 179.97438 * 6 3 2 8 8 C 1.34777 * 120.00116 * 179.97438 * 7 6 3 9 9 O 1.21603 * 119.99916 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00128 * 180.02562 * 8 7 6 11 11 C 1.40186 * 119.99745 * 180.27816 * 10 8 7 12 12 C 1.40400 * 125.97490 * 359.43676 * 11 10 8 13 13 C 1.35239 * 107.86845 * 179.86647 * 12 11 10 14 14 N 1.34968 * 107.85956 * 0.39102 * 13 12 11 15 15 C 1.46494 * 125.98026 * 179.74843 * 14 13 12 16 16 C 1.50705 * 109.47098 * 124.97744 * 15 14 13 17 17 H 1.07990 * 120.00088 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99817 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00207 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99960 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47407 * 59.99540 * 20 18 16 22 22 H 1.48499 * 109.47426 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47183 * 299.99642 * 20 18 16 24 24 N 1.31208 * 125.96918 * 179.74638 * 11 10 8 25 25 N 1.31208 * 108.05909 * 0.26212 * 6 3 2 26 26 N 1.34967 * 126.06693 * 180.02562 * 2 1 3 27 27 C 1.46496 * 125.97896 * 0.02686 * 26 2 1 28 28 H 1.08997 * 109.47386 * 89.99895 * 1 2 3 29 29 H 1.08999 * 109.47007 * 209.99925 * 1 2 3 30 30 H 1.08999 * 109.46898 * 329.99418 * 1 2 3 31 31 H 1.09000 * 109.47328 * 29.99821 * 4 3 2 32 32 H 1.09003 * 109.46843 * 150.00232 * 4 3 2 33 33 H 1.00895 * 110.99801 * 180.02562 * 5 4 3 34 34 H 1.00900 * 111.00166 * 303.95803 * 5 4 3 35 35 H 0.97000 * 120.00335 * 0.02562 * 7 6 3 36 36 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 37 37 H 1.07998 * 126.06748 * 0.02562 * 12 11 10 38 38 H 1.08007 * 126.07492 * 180.11339 * 13 12 11 39 39 H 1.08991 * 109.47488 * 244.98233 * 15 14 13 40 40 H 1.09009 * 109.47102 * 4.98015 * 15 14 13 41 41 H 0.96999 * 120.00165 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.46762 * 90.00388 * 27 26 2 43 43 H 1.09001 * 109.47474 * 210.00584 * 27 26 2 44 44 H 1.08996 * 109.47036 * 330.00697 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 1.8410 2.5275 -0.0005 5 7 1.6913 2.9932 -1.3858 6 6 3.6370 0.6545 -0.0006 7 7 4.7737 1.4750 -0.0013 8 6 6.0032 0.9231 -0.0013 9 8 6.1266 -0.2866 -0.0012 10 7 7.0960 1.7120 -0.0015 11 6 8.3749 1.1378 -0.0074 12 6 8.6620 -0.2365 -0.0023 13 6 10.0067 -0.3796 -0.0138 14 7 10.5542 0.8541 -0.0171 15 6 11.9869 1.1598 -0.0236 16 6 12.3029 2.0606 -1.1899 17 1 11.5154 2.3742 -1.8589 18 6 13.5976 2.4842 -1.4026 19 7 14.5567 2.1027 -0.5876 20 14 13.9893 3.6012 -2.8477 21 1 13.2151 4.8622 -2.7227 22 1 15.4416 3.9111 -2.8545 23 1 13.6224 2.9187 -4.1146 24 7 9.5129 1.7909 -0.0129 25 7 3.6336 -0.6575 -0.0066 26 7 2.3016 -1.0910 -0.0005 27 6 1.8500 -2.4846 -0.0017 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 0.8822 2.6005 0.5129 32 1 2.5765 3.1464 0.5134 33 1 1.3823 3.9533 -1.4130 34 1 2.5504 2.8753 -1.9017 35 1 4.6753 2.4400 -0.0010 36 1 6.9976 2.6769 -0.0019 37 1 7.9375 -1.0374 0.0065 38 1 10.5468 -1.3149 -0.0153 39 1 12.2557 1.6612 0.9060 40 1 12.5555 0.2343 -0.1148 41 1 15.4675 2.4010 -0.7371 42 1 1.7385 -2.8294 -1.0296 43 1 2.5844 -3.1050 0.5121 44 1 0.8912 -2.5562 0.5116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579532716.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:52 Heat of formation + Delta-G solvation = 120.731412 kcal Electronic energy + Delta-G solvation = -27572.440925 eV Core-core repulsion = 23563.119479 eV Total energy + Delta-G solvation = -4009.321446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.61981 -42.15603 -40.84523 -36.75280 -36.21381 -35.56229 -35.30204 -33.44564 -32.49741 -32.34566 -30.96570 -28.69629 -28.37322 -27.22605 -25.43530 -24.71494 -23.68035 -22.30568 -21.59980 -21.15834 -20.39851 -19.04336 -18.69009 -18.36149 -17.64699 -17.22170 -16.96774 -16.75101 -16.48625 -16.28681 -16.00454 -15.70644 -15.56344 -15.23268 -14.54571 -14.41630 -14.28984 -14.17786 -13.84550 -13.84336 -13.77222 -13.52454 -13.21115 -12.95801 -12.87874 -12.73148 -12.66189 -12.29255 -12.14613 -11.77851 -11.69791 -11.51360 -11.39828 -11.02020 -10.72049 -9.82250 -9.68010 -9.52329 -9.20194 -9.00713 -8.32787 -6.46948 0.78281 0.87186 1.05856 1.37838 1.40198 1.43137 1.49321 1.62584 1.90461 2.10489 2.35737 2.43116 2.96237 2.99043 3.57733 3.84544 3.95997 3.98456 4.21408 4.23907 4.33530 4.40061 4.44217 4.62224 4.64192 4.71627 4.77324 4.83920 4.88714 4.91944 4.96973 5.01365 5.13442 5.20692 5.25481 5.55808 5.63519 5.75482 5.81805 5.89840 6.20826 6.26333 6.29448 6.43423 6.64472 6.70137 6.89442 7.08833 7.22719 7.29726 8.74624 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.002160 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.712299 B =12958.745692 C =13843.097353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.121 3.879 3 C -0.267 4.267 4 C 0.147 3.853 5 N -0.851 5.851 6 C 0.302 3.698 7 N -0.627 5.627 8 C 0.707 3.293 9 O -0.559 6.559 10 N -0.628 5.628 11 C 0.285 3.715 12 C -0.293 4.293 13 C 0.059 3.941 14 N -0.343 5.343 15 C 0.272 3.728 16 C -0.548 4.548 17 H 0.053 0.947 18 C 0.018 3.982 19 N -0.920 5.920 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.273 1.273 23 H -0.270 1.270 24 N -0.341 5.341 25 N -0.331 5.331 26 N -0.378 5.378 27 C 0.095 3.905 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.352 0.648 34 H 0.337 0.663 35 H 0.431 0.569 36 H 0.423 0.577 37 H 0.162 0.838 38 H 0.201 0.799 39 H 0.023 0.977 40 H 0.059 0.941 41 H 0.273 0.727 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.535 -1.894 2.029 32.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.009 4.009 3 C -0.281 4.281 4 C 0.016 3.984 5 N -0.382 5.382 6 C 0.045 3.955 7 N -0.282 5.282 8 C 0.405 3.595 9 O -0.431 6.431 10 N -0.280 5.280 11 C 0.030 3.970 12 C -0.324 4.324 13 C -0.090 4.090 14 N -0.125 5.125 15 C 0.154 3.846 16 C -0.586 4.586 17 H 0.071 0.929 18 C -0.183 4.183 19 N -0.559 5.559 20 Si 0.796 3.204 21 H -0.198 1.198 22 H -0.198 1.198 23 H -0.196 1.196 24 N -0.172 5.172 25 N -0.160 5.160 26 N -0.162 5.162 27 C -0.045 4.045 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.055 0.945 33 H 0.166 0.834 34 H 0.149 0.851 35 H 0.271 0.729 36 H 0.261 0.739 37 H 0.179 0.821 38 H 0.218 0.782 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -31.387 -3.558 2.021 31.652 hybrid contribution 0.890 1.891 -0.327 2.115 sum -30.496 -1.668 1.695 30.589 Atomic orbital electron populations 1.20600 0.83878 1.05267 1.04551 1.21440 0.96372 0.85539 0.97513 1.19498 0.88102 0.97598 1.22911 1.19916 1.00717 0.87822 0.89907 1.58732 1.38300 1.27815 1.13400 1.19013 0.86419 0.89695 1.00350 1.41495 1.00462 1.09772 1.76473 1.15728 0.80348 0.85019 0.78368 1.90953 1.84465 1.13115 1.54520 1.41145 1.00295 1.10316 1.76278 1.18972 0.84891 0.91947 1.01224 1.21643 0.95005 0.95618 1.20173 1.23127 0.94151 0.91144 1.00580 1.48842 1.06647 1.02991 1.54015 1.19355 0.69905 0.97892 0.97460 1.21366 0.94225 1.31193 1.11807 0.92917 1.25751 0.95436 0.97500 0.99588 1.69989 1.01668 1.45663 1.38569 0.85397 0.77381 0.78816 0.78817 1.19753 1.19786 1.19554 1.77245 0.93252 1.16243 1.30496 1.77983 0.97454 1.10613 1.29927 1.48561 1.02440 1.07587 1.57587 1.22134 1.02006 0.75925 1.04402 0.89043 0.89147 0.88260 0.88696 0.94527 0.83411 0.85139 0.72936 0.73868 0.82055 0.78179 0.95933 0.92337 0.91830 0.89905 0.90135 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 9.90 71.24 0.70 0.12 16 2 C 0.12 2.02 6.92 41.39 0.29 2.31 16 3 C -0.27 -5.00 5.63 -20.03 -0.11 -5.11 16 4 C 0.15 1.72 6.90 85.56 0.59 2.31 16 5 N -0.85 -9.37 9.61 -189.99 -1.83 -11.19 16 6 C 0.30 7.92 7.78 133.32 1.04 8.96 16 7 N -0.63 -14.92 5.45 -321.22 -1.75 -16.68 16 8 C 0.71 22.88 8.50 179.05 1.52 24.41 16 9 O -0.56 -22.69 12.19 -4.04 -0.05 -22.74 16 10 N -0.63 -20.09 5.45 -321.23 -1.75 -21.84 16 11 C 0.29 11.88 8.11 133.32 1.08 12.96 16 12 C -0.29 -12.25 9.60 22.10 0.21 -12.04 16 13 C 0.06 2.42 11.44 83.52 0.96 3.37 16 14 N -0.34 -16.52 3.67 -351.84 -1.29 -17.81 16 15 C 0.27 14.36 6.26 85.64 0.54 14.90 16 16 C -0.55 -31.23 9.24 25.60 0.24 -31.00 16 17 H 0.05 3.11 7.81 -2.92 -0.02 3.09 16 18 C 0.02 0.98 5.46 84.65 0.46 1.45 16 19 N -0.92 -52.57 13.29 21.45 0.28 -52.28 16 20 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 N -0.34 -16.20 12.42 -54.44 -0.68 -16.88 16 25 N -0.33 -10.28 10.80 -54.44 -0.59 -10.87 16 26 N -0.38 -8.08 4.01 -356.09 -1.43 -9.51 16 27 C 0.10 1.19 11.27 127.77 1.44 2.62 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.25 7.07 -2.39 -0.02 0.24 16 30 H 0.10 0.44 7.14 -2.39 -0.02 0.42 16 31 H 0.09 0.80 7.14 -2.39 -0.02 0.79 16 32 H 0.04 0.37 7.70 -2.39 -0.02 0.35 16 33 H 0.35 2.38 9.08 -89.70 -0.81 1.56 16 34 H 0.34 4.28 8.99 -89.69 -0.81 3.47 16 35 H 0.43 6.54 8.23 -92.71 -0.76 5.77 16 36 H 0.42 10.39 8.84 -92.71 -0.82 9.57 16 37 H 0.16 6.80 5.91 -2.91 -0.02 6.78 16 38 H 0.20 6.60 8.06 -2.91 -0.02 6.58 16 39 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 3.01 8.07 -2.38 -0.02 2.99 16 41 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 44 H 0.12 0.54 7.04 -2.39 -0.02 0.52 16 Total: -1.00 -82.36 376.70 -0.20 -82.55 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -2.10 Total: 26.04 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: 8.95 Total: 25.26 kcal Atomic # 7 Polarization: -148.03 SS G_CDS: -9.03 Total: -157.06 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.74 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -82.36 -0.20 -82.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579532716.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.285 kcal (2) G-P(sol) polarization free energy of solvation -82.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds