Wall clock time and date at job start Tue Mar 31 2020 19:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46859 * 2 1 4 4 C 1.53000 * 109.46896 * 240.00016 * 2 1 3 5 5 C 1.52998 * 109.47092 * 119.99924 * 2 1 3 6 6 H 1.09011 * 109.46474 * 180.02562 * 5 2 1 7 7 C 1.52998 * 109.47207 * 60.00289 * 5 2 1 8 8 C 1.50703 * 109.47017 * 174.99511 * 7 5 2 9 9 O 1.20828 * 119.99792 * 359.97438 * 8 7 5 10 10 O 1.34230 * 119.99679 * 179.97438 * 8 7 5 11 11 N 1.46495 * 109.47251 * 300.00026 * 5 2 1 12 12 C 1.34779 * 119.99987 * 275.00192 * 11 5 2 13 13 O 1.21286 * 119.99878 * 359.97438 * 12 11 5 14 14 C 1.50698 * 119.99996 * 179.97438 * 12 11 5 15 15 C 1.50703 * 109.47104 * 179.97438 * 14 12 11 16 16 C 1.37639 * 120.12881 * 265.00408 * 15 14 12 17 17 C 1.38620 * 120.24538 * 179.97438 * 16 15 14 18 18 C 1.38652 * 120.50364 * 0.02562 * 17 16 15 19 19 C 1.37599 * 120.24830 * 0.02562 * 18 17 16 20 20 C 1.40698 * 120.12684 * 84.72974 * 15 14 12 21 21 C 1.41399 * 120.24131 * 359.97438 * 20 15 14 22 22 H 1.08000 * 120.00149 * 334.04373 * 21 20 15 23 23 C 1.39947 * 119.99986 * 154.04418 * 21 20 15 24 24 N 1.30828 * 119.99681 * 343.58444 * 23 21 20 25 25 Si 1.86801 * 120.00520 * 163.58344 * 23 21 20 26 26 H 1.48494 * 109.46994 * 89.99740 * 25 23 21 27 27 H 1.48497 * 109.47248 * 210.00503 * 25 23 21 28 28 H 1.48504 * 109.46413 * 330.00048 * 25 23 21 29 29 H 1.08994 * 109.46690 * 299.99630 * 1 2 3 30 30 H 1.08990 * 109.47165 * 60.00146 * 1 2 3 31 31 H 1.09005 * 109.46457 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47205 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47160 * 300.00068 * 3 2 1 34 34 H 1.08993 * 109.47498 * 59.99960 * 3 2 1 35 35 H 1.08999 * 109.47447 * 299.99836 * 4 2 1 36 36 H 1.09004 * 109.47173 * 59.99900 * 4 2 1 37 37 H 1.08998 * 109.46931 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.47089 * 54.99689 * 7 5 2 39 39 H 1.09001 * 109.46819 * 294.99623 * 7 5 2 40 40 H 0.96705 * 116.99685 * 180.02562 * 10 8 7 41 41 H 0.96996 * 120.00648 * 95.00128 * 11 5 2 42 42 H 1.09000 * 109.47443 * 299.99934 * 14 12 11 43 43 H 1.09001 * 109.47274 * 60.00223 * 14 12 11 44 44 H 1.07994 * 119.87771 * 359.97438 * 16 15 14 45 45 H 1.07995 * 119.74665 * 179.97438 * 17 16 15 46 46 H 1.08002 * 119.87574 * 179.97438 * 18 17 16 47 47 H 1.08002 * 120.12626 * 179.97438 * 19 18 17 48 48 H 0.97005 * 119.99991 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0401 -0.7212 1.2492 6 1 3.1302 -0.7208 1.2494 7 6 1.5301 -2.1637 1.2492 8 6 2.1312 -2.9090 2.4131 9 8 2.8899 -2.3443 3.1650 10 8 1.8235 -4.2000 2.6142 11 7 1.5518 -0.0306 2.4454 12 6 2.2286 1.0262 2.9368 13 8 3.2421 1.4052 2.3891 14 6 1.7259 1.7370 4.1670 15 6 2.6562 2.8731 4.5060 16 6 3.6639 2.6899 5.4255 17 6 4.5213 3.7332 5.7388 18 6 4.3746 4.9712 5.1319 19 6 3.3736 5.1772 4.2106 20 6 2.5015 4.1234 3.8797 21 6 1.4738 4.3213 2.9289 22 1 1.0856 3.4822 2.3707 23 6 0.9596 5.6046 2.7111 24 7 1.1810 6.5545 3.5830 25 14 -0.0428 5.9612 1.1757 26 1 -1.4788 5.7023 1.4509 27 1 0.1383 7.3824 0.7854 28 1 0.4157 5.0820 0.0702 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2495 38 1 1.8185 -2.6510 0.3178 39 1 0.4438 -2.1650 1.3388 40 1 2.2334 -4.6357 3.3741 41 1 0.7414 -0.3339 2.8837 42 1 0.7268 2.1292 3.9772 43 1 1.6889 1.0368 5.0015 44 1 3.7871 1.7300 5.9046 45 1 5.3090 3.5807 6.4617 46 1 5.0481 5.7770 5.3839 47 1 3.2609 6.1425 3.7394 48 1 0.8249 7.4441 3.4319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603304472.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:24 Heat of formation + Delta-G solvation = -125.901112 kcal Electronic energy + Delta-G solvation = -30277.116947 eV Core-core repulsion = 26296.055553 eV Total energy + Delta-G solvation = -3981.061394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.72603 -39.47836 -37.81215 -36.72065 -36.19697 -33.54882 -33.30735 -31.63677 -30.76867 -29.36815 -27.31276 -27.16608 -26.49848 -25.15539 -24.34252 -21.35503 -20.86270 -20.59488 -19.23800 -18.73596 -18.05371 -17.08794 -16.85342 -16.46362 -16.02167 -15.49861 -15.40743 -14.97628 -14.42227 -14.07005 -13.97909 -13.67090 -13.57724 -13.06712 -13.05624 -12.94225 -12.76940 -12.51319 -12.05650 -11.95408 -11.64519 -11.61312 -11.52068 -11.49664 -11.40097 -11.07133 -11.05532 -10.93970 -10.82152 -10.64815 -10.62678 -10.48620 -10.41122 -10.30304 -9.39889 -9.28305 -9.08801 -8.95573 -8.50314 -7.22197 -7.20485 -6.66890 -4.26508 2.09453 2.84191 2.84463 3.05435 3.09806 3.14859 3.33099 3.52149 3.72380 3.98121 4.43573 4.73416 4.77519 4.88042 4.98750 5.08920 5.19091 5.29168 5.50404 5.57392 5.66659 5.78488 5.83667 5.89317 6.01828 6.06670 6.12609 6.15644 6.20762 6.27006 6.33883 6.38327 6.40553 6.51938 6.54868 6.60245 6.86309 6.90885 6.95836 7.17645 7.38563 7.50882 7.72778 7.75833 7.98904 8.07320 8.16746 8.21749 8.39914 8.72911 8.99403 9.04962 9.10011 10.27253 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.004602 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.750925 B = 6083.360207 C = 7832.965190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 C -0.135 4.135 4 C -0.144 4.144 5 C 0.170 3.830 6 H 0.095 0.905 7 C -0.127 4.127 8 C 0.469 3.531 9 O -0.493 6.493 10 O -0.524 6.524 11 N -0.734 5.734 12 C 0.523 3.477 13 O -0.514 6.514 14 C -0.071 4.071 15 C -0.177 4.177 16 C -0.081 4.081 17 C -0.239 4.239 18 C -0.108 4.108 19 C -0.160 4.160 20 C 0.130 3.870 21 C -0.454 4.454 22 H 0.075 0.925 23 C 0.078 3.922 24 N -0.797 5.797 25 Si 0.898 3.102 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.260 1.260 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.408 0.592 41 H 0.390 0.610 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.116 0.884 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.791 -16.528 -6.526 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 C -0.192 4.192 4 C -0.201 4.201 5 C 0.065 3.935 6 H 0.113 0.887 7 C -0.165 4.165 8 C 0.310 3.690 9 O -0.379 6.379 10 O -0.337 6.337 11 N -0.387 5.387 12 C 0.311 3.689 13 O -0.387 6.387 14 C -0.111 4.111 15 C -0.178 4.178 16 C -0.099 4.099 17 C -0.258 4.258 18 C -0.127 4.127 19 C -0.179 4.179 20 C 0.127 3.873 21 C -0.484 4.484 22 H 0.093 0.907 23 C -0.139 4.139 24 N -0.423 5.423 25 Si 0.722 3.278 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.184 1.184 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.267 0.733 41 H 0.223 0.777 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.134 0.866 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.046 -15.607 -6.995 17.575 hybrid contribution -0.612 -0.228 0.071 0.657 sum -4.658 -15.836 -6.924 17.900 Atomic orbital electron populations 1.21931 0.94641 1.01064 1.02500 1.20977 0.95828 0.97300 0.93868 1.21930 1.01880 0.93372 1.02046 1.21955 1.01393 0.99559 0.97220 1.20662 1.00495 0.86965 0.85400 0.88722 1.21894 1.03109 0.95363 0.96091 1.23525 0.79223 0.79900 0.86343 1.90833 1.33251 1.68045 1.45779 1.84527 1.69866 1.26602 1.52662 1.46014 1.29489 1.33664 1.29514 1.20965 0.83629 0.78777 0.85554 1.90676 1.24311 1.63972 1.59735 1.20260 1.00777 0.96040 0.94051 1.19057 1.00723 0.95130 1.02934 1.20309 0.95361 0.96391 0.97880 1.20296 1.03578 0.94816 1.07148 1.20664 0.98149 0.95597 0.98261 1.21284 0.95600 1.00219 1.00818 1.17314 0.90617 0.89906 0.89413 1.19442 1.16779 0.93371 1.18787 0.90743 1.25856 0.95709 0.95978 0.96392 1.69830 1.37032 1.03261 1.32142 0.86477 0.79991 0.78495 0.82801 1.19641 1.20194 1.18397 0.92034 0.92616 0.92989 0.91856 0.93869 0.91019 0.92768 0.92302 0.92374 0.86309 0.87072 0.73303 0.77676 0.88898 0.90923 0.89856 0.89801 0.89713 0.86592 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 7.97 37.16 0.30 -1.20 16 2 C -0.08 -0.94 0.62 -154.51 -0.10 -1.04 16 3 C -0.14 -2.23 7.00 37.16 0.26 -1.97 16 4 C -0.14 -1.39 8.13 37.16 0.30 -1.09 16 5 C 0.17 2.16 1.09 -67.94 -0.07 2.08 16 6 H 0.09 1.50 7.39 -51.92 -0.38 1.12 16 7 C -0.13 -1.11 4.63 -27.88 -0.13 -1.24 16 8 C 0.47 4.98 8.19 36.01 0.29 5.27 16 9 O -0.49 -7.41 16.11 -18.75 -0.30 -7.72 16 10 O -0.52 -4.12 13.42 -39.26 -0.53 -4.65 16 11 N -0.73 -10.59 3.34 -53.81 -0.18 -10.77 16 12 C 0.52 10.15 5.80 -10.98 -0.06 10.09 16 13 O -0.51 -12.01 13.16 5.55 0.07 -11.94 16 14 C -0.07 -1.44 5.18 -29.03 -0.15 -1.59 16 15 C -0.18 -4.34 4.43 -103.91 -0.46 -4.80 16 16 C -0.08 -1.95 9.66 -39.66 -0.38 -2.34 16 17 C -0.24 -5.77 10.05 -39.29 -0.39 -6.17 16 18 C -0.11 -2.71 10.02 -39.66 -0.40 -3.11 16 19 C -0.16 -4.34 8.69 -38.87 -0.34 -4.68 16 20 C 0.13 3.49 5.56 -106.82 -0.59 2.90 16 21 C -0.45 -11.85 8.14 -37.74 -0.31 -12.16 16 22 H 0.07 1.87 5.94 -52.49 -0.31 1.56 16 23 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 24 N -0.80 -20.72 10.95 55.55 0.61 -20.12 16 25 Si 0.90 18.83 29.59 -169.99 -5.03 13.80 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 27 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 28 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 29 H 0.06 0.71 7.60 -51.93 -0.39 0.31 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.40 6.54 -51.93 -0.34 0.06 16 32 H 0.06 1.15 7.53 -51.93 -0.39 0.76 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.40 5.05 -51.93 -0.26 1.14 16 35 H 0.05 0.39 6.32 -51.93 -0.33 0.07 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.12 0.80 6.17 -51.93 -0.32 0.48 16 39 H 0.11 0.75 6.71 -51.93 -0.35 0.40 16 40 H 0.41 1.78 9.10 45.56 0.41 2.19 16 41 H 0.39 4.60 8.60 -40.82 -0.35 4.24 16 42 H 0.09 1.82 7.08 -51.93 -0.37 1.45 16 43 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 44 H 0.08 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.08 1.81 8.06 -52.49 -0.42 1.39 16 46 H 0.08 1.91 8.06 -52.49 -0.42 1.48 16 47 H 0.12 3.23 6.20 -52.49 -0.33 2.91 16 48 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -33.35 381.55 -8.15 -41.51 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -6.22 Total: 13.31 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -2.32 Total: -19.18 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.43 Total: -30.89 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.76 Total: -24.30 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.35 -8.15 -41.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603304472.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.392 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds