Wall clock time and date at job start Tue Mar 31 2020 19:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46859 * 2 1 4 4 C 1.53000 * 109.46896 * 240.00016 * 2 1 3 5 5 C 1.52998 * 109.47092 * 119.99924 * 2 1 3 6 6 H 1.09011 * 109.46474 * 180.02562 * 5 2 1 7 7 C 1.52998 * 109.47207 * 60.00289 * 5 2 1 8 8 C 1.50703 * 109.47017 * 174.99511 * 7 5 2 9 9 O 1.20828 * 119.99792 * 359.97438 * 8 7 5 10 10 O 1.34230 * 119.99679 * 179.97438 * 8 7 5 11 11 N 1.46495 * 109.47251 * 300.00026 * 5 2 1 12 12 C 1.34779 * 119.99987 * 275.00192 * 11 5 2 13 13 O 1.21286 * 119.99878 * 359.97438 * 12 11 5 14 14 C 1.50698 * 119.99996 * 179.97438 * 12 11 5 15 15 C 1.50703 * 109.47104 * 179.97438 * 14 12 11 16 16 C 1.37639 * 120.12881 * 265.00408 * 15 14 12 17 17 C 1.38620 * 120.24538 * 179.97438 * 16 15 14 18 18 C 1.38652 * 120.50364 * 0.02562 * 17 16 15 19 19 C 1.37599 * 120.24830 * 0.02562 * 18 17 16 20 20 C 1.40698 * 120.12684 * 84.72974 * 15 14 12 21 21 C 1.41399 * 120.24131 * 359.97438 * 20 15 14 22 22 H 1.08000 * 120.00149 * 334.04373 * 21 20 15 23 23 C 1.39947 * 119.99986 * 154.04418 * 21 20 15 24 24 N 1.30828 * 119.99681 * 343.58444 * 23 21 20 25 25 Si 1.86801 * 120.00520 * 163.58344 * 23 21 20 26 26 H 1.48494 * 109.46994 * 89.99740 * 25 23 21 27 27 H 1.48497 * 109.47248 * 210.00503 * 25 23 21 28 28 H 1.48504 * 109.46413 * 330.00048 * 25 23 21 29 29 H 1.08994 * 109.46690 * 299.99630 * 1 2 3 30 30 H 1.08990 * 109.47165 * 60.00146 * 1 2 3 31 31 H 1.09005 * 109.46457 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47205 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47160 * 300.00068 * 3 2 1 34 34 H 1.08993 * 109.47498 * 59.99960 * 3 2 1 35 35 H 1.08999 * 109.47447 * 299.99836 * 4 2 1 36 36 H 1.09004 * 109.47173 * 59.99900 * 4 2 1 37 37 H 1.08998 * 109.46931 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.47089 * 54.99689 * 7 5 2 39 39 H 1.09001 * 109.46819 * 294.99623 * 7 5 2 40 40 H 0.96705 * 116.99685 * 180.02562 * 10 8 7 41 41 H 0.96996 * 120.00648 * 95.00128 * 11 5 2 42 42 H 1.09000 * 109.47443 * 299.99934 * 14 12 11 43 43 H 1.09001 * 109.47274 * 60.00223 * 14 12 11 44 44 H 1.07994 * 119.87771 * 359.97438 * 16 15 14 45 45 H 1.07995 * 119.74665 * 179.97438 * 17 16 15 46 46 H 1.08002 * 119.87574 * 179.97438 * 18 17 16 47 47 H 1.08002 * 120.12626 * 179.97438 * 19 18 17 48 48 H 0.97005 * 119.99991 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0401 -0.7212 1.2492 6 1 3.1302 -0.7208 1.2494 7 6 1.5301 -2.1637 1.2492 8 6 2.1312 -2.9090 2.4131 9 8 2.8899 -2.3443 3.1650 10 8 1.8235 -4.2000 2.6142 11 7 1.5518 -0.0306 2.4454 12 6 2.2286 1.0262 2.9368 13 8 3.2421 1.4052 2.3891 14 6 1.7259 1.7370 4.1670 15 6 2.6562 2.8731 4.5060 16 6 3.6639 2.6899 5.4255 17 6 4.5213 3.7332 5.7388 18 6 4.3746 4.9712 5.1319 19 6 3.3736 5.1772 4.2106 20 6 2.5015 4.1234 3.8797 21 6 1.4738 4.3213 2.9289 22 1 1.0856 3.4822 2.3707 23 6 0.9596 5.6046 2.7111 24 7 1.1810 6.5545 3.5830 25 14 -0.0428 5.9612 1.1757 26 1 -1.4788 5.7023 1.4509 27 1 0.1383 7.3824 0.7854 28 1 0.4157 5.0820 0.0702 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2495 38 1 1.8185 -2.6510 0.3178 39 1 0.4438 -2.1650 1.3388 40 1 2.2334 -4.6357 3.3741 41 1 0.7414 -0.3339 2.8837 42 1 0.7268 2.1292 3.9772 43 1 1.6889 1.0368 5.0015 44 1 3.7871 1.7300 5.9046 45 1 5.3090 3.5807 6.4617 46 1 5.0481 5.7770 5.3839 47 1 3.2609 6.1425 3.7394 48 1 0.8249 7.4441 3.4319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603304472.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:22 Heat of formation + Delta-G solvation = -147.182674 kcal Electronic energy + Delta-G solvation = -30278.039785 eV Core-core repulsion = 26296.055553 eV Total energy + Delta-G solvation = -3981.984232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.71915 -40.67542 -39.42197 -38.18166 -36.99081 -35.48240 -34.56385 -33.34687 -31.83794 -31.32228 -28.71453 -28.11185 -27.76348 -26.94566 -25.55529 -22.81831 -22.28137 -22.10933 -20.90450 -19.74049 -19.06024 -18.85721 -17.85128 -17.64005 -17.27566 -17.09479 -16.60925 -16.32485 -16.13507 -15.49644 -15.39972 -14.96531 -14.70786 -14.51692 -14.39808 -14.34268 -13.95601 -13.70966 -13.43994 -13.34878 -13.08666 -12.89473 -12.78113 -12.74602 -12.69067 -12.52190 -12.48167 -12.41871 -12.21567 -12.12869 -12.00573 -11.59264 -11.53397 -11.39771 -11.31690 -11.15721 -10.99707 -10.54985 -9.77958 -9.21560 -9.14512 -8.57555 -6.25928 1.00900 1.14311 1.30683 1.35629 1.46915 1.54187 2.01369 2.16238 2.20761 2.45887 2.80907 3.54209 3.79073 3.85052 4.01192 4.15778 4.22045 4.25598 4.40017 4.43378 4.49462 4.60783 4.62525 4.69144 4.73912 4.80300 4.81800 4.83894 4.96452 5.01354 5.07437 5.11818 5.16029 5.21563 5.25485 5.37128 5.39815 5.54768 5.56252 5.58666 5.71227 5.76074 5.79817 6.05873 6.18883 6.22434 6.43989 6.73219 6.80934 7.02028 7.07314 7.13386 7.62115 8.39086 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.004602 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.750925 B = 6083.360207 C = 7832.965190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C -0.130 4.130 4 C -0.140 4.140 5 C 0.170 3.830 6 H 0.057 0.943 7 C -0.119 4.119 8 C 0.476 3.524 9 O -0.547 6.547 10 O -0.512 6.512 11 N -0.714 5.714 12 C 0.525 3.475 13 O -0.563 6.563 14 C -0.071 4.071 15 C -0.183 4.183 16 C -0.095 4.095 17 C -0.245 4.245 18 C -0.118 4.118 19 C -0.194 4.194 20 C 0.100 3.900 21 C -0.475 4.475 22 H 0.075 0.925 23 C 0.037 3.963 24 N -0.828 5.828 25 Si 0.966 3.034 26 H -0.254 1.254 27 H -0.271 1.271 28 H -0.264 1.264 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.031 0.969 33 H 0.045 0.955 34 H 0.036 0.964 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.425 0.575 41 H 0.406 0.594 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.098 0.902 48 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.021 -19.585 -7.764 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.188 4.188 4 C -0.198 4.198 5 C 0.065 3.935 6 H 0.075 0.925 7 C -0.156 4.156 8 C 0.319 3.681 9 O -0.437 6.437 10 O -0.326 6.326 11 N -0.367 5.367 12 C 0.313 3.687 13 O -0.440 6.440 14 C -0.111 4.111 15 C -0.185 4.185 16 C -0.113 4.113 17 C -0.264 4.264 18 C -0.136 4.136 19 C -0.213 4.213 20 C 0.098 3.902 21 C -0.504 4.504 22 H 0.093 0.907 23 C -0.177 4.177 24 N -0.454 5.454 25 Si 0.788 3.212 26 H -0.179 1.179 27 H -0.195 1.195 28 H -0.188 1.188 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.168 0.832 39 H 0.163 0.837 40 H 0.286 0.714 41 H 0.242 0.758 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.125 0.875 45 H 0.129 0.871 46 H 0.122 0.878 47 H 0.116 0.884 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.323 -18.733 -8.220 21.412 hybrid contribution 0.141 0.639 0.521 0.837 sum -6.182 -18.094 -7.699 20.612 Atomic orbital electron populations 1.21934 0.92569 1.03454 1.01957 1.20923 0.97327 0.94302 0.94806 1.21849 0.99821 0.96767 1.00357 1.21944 1.00721 1.01350 0.95767 1.20701 0.98626 0.89593 0.84602 0.92473 1.21915 1.04719 0.92082 0.96840 1.23794 0.78006 0.80374 0.85878 1.90838 1.35759 1.69307 1.47809 1.84483 1.69424 1.25213 1.53447 1.45759 1.29172 1.31972 1.29748 1.20725 0.83244 0.79606 0.85144 1.90663 1.26618 1.65699 1.61062 1.20261 0.99770 0.95425 0.95624 1.19525 1.01242 0.95688 1.02072 1.20691 0.95185 0.97483 0.97914 1.20661 1.04136 0.94336 1.07232 1.20924 0.97973 0.96866 0.97859 1.21305 0.97368 1.00006 1.02623 1.17696 0.91215 0.90958 0.90359 1.19604 1.17283 0.94219 1.19320 0.90716 1.26658 0.96652 0.95368 0.99042 1.69896 1.37965 1.03802 1.33747 0.85436 0.79060 0.78258 0.78475 1.17850 1.19533 1.18820 0.93450 0.92452 0.89035 0.94973 0.93552 0.94498 0.89069 0.91796 0.93607 0.83162 0.83691 0.71409 0.75797 0.88635 0.88400 0.87499 0.87051 0.87766 0.88440 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.97 71.98 0.57 -1.90 16 2 C -0.07 -1.63 0.62 -52.18 -0.03 -1.66 16 3 C -0.13 -4.46 7.00 71.98 0.50 -3.96 16 4 C -0.14 -2.32 8.13 71.98 0.59 -1.74 16 5 C 0.17 4.07 1.09 44.99 0.05 4.12 16 6 H 0.06 1.85 7.39 -2.38 -0.02 1.83 16 7 C -0.12 -1.60 4.63 29.85 0.14 -1.46 16 8 C 0.48 8.76 8.19 71.24 0.58 9.34 16 9 O -0.55 -15.90 16.11 21.96 0.35 -15.55 16 10 O -0.51 -6.16 13.42 -51.41 -0.69 -6.85 16 11 N -0.71 -20.11 3.34 -442.53 -1.48 -21.59 16 12 C 0.53 20.86 5.80 87.66 0.51 21.37 16 13 O -0.56 -27.74 13.16 -3.05 -0.04 -27.78 16 14 C -0.07 -2.90 5.18 29.10 0.15 -2.75 16 15 C -0.18 -9.28 4.43 -19.40 -0.09 -9.36 16 16 C -0.09 -4.59 9.66 22.22 0.21 -4.38 16 17 C -0.24 -11.87 10.05 22.46 0.23 -11.64 16 18 C -0.12 -6.08 10.02 22.22 0.22 -5.86 16 19 C -0.19 -11.05 8.69 22.73 0.20 -10.85 16 20 C 0.10 5.63 5.56 -21.29 -0.12 5.51 16 21 C -0.47 -25.84 8.14 23.46 0.19 -25.65 16 22 H 0.07 3.93 5.94 -2.91 -0.02 3.92 16 23 C 0.04 1.91 5.16 85.26 0.44 2.35 16 24 N -0.83 -44.59 10.95 21.83 0.24 -44.35 16 25 Si 0.97 39.35 29.59 68.60 2.03 41.38 16 26 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 27 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 28 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 29 H 0.05 0.97 7.60 -2.39 -0.02 0.95 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 0.88 6.54 -2.38 -0.02 0.87 16 32 H 0.03 1.25 7.53 -2.39 -0.02 1.23 16 33 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.04 1.50 5.05 -2.39 -0.01 1.49 16 35 H 0.09 0.85 6.32 -2.39 -0.02 0.83 16 36 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.15 1.18 6.17 -2.39 -0.01 1.17 16 39 H 0.15 1.07 6.71 -2.39 -0.02 1.05 16 40 H 0.42 2.39 9.10 -74.05 -0.67 1.71 16 41 H 0.41 8.76 8.60 -92.71 -0.80 7.96 16 42 H 0.10 3.79 7.08 -2.39 -0.02 3.78 16 43 H 0.10 3.40 8.05 -2.39 -0.02 3.38 16 44 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 45 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 46 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 47 H 0.10 5.79 6.20 -2.91 -0.02 5.77 16 48 H 0.28 13.96 8.30 -92.70 -0.77 13.19 16 Total: -1.00 -79.06 381.55 4.29 -74.77 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: -0.47 Total: 38.46 kcal Atomic # 6 Polarization: -42.84 SS G_CDS: 4.35 Total: -38.50 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -1.24 Total: -65.93 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.38 Total: -50.18 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -79.06 4.29 -74.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603304472.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.414 kcal (2) G-P(sol) polarization free energy of solvation -79.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds