Wall clock time and date at job start Tue Mar 31 2020 18:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47201 * 2 1 4 4 C 1.53000 * 109.46822 * 239.99820 * 2 1 3 5 5 C 1.53001 * 109.47245 * 120.00002 * 2 1 3 6 6 C 1.52992 * 109.47070 * 66.20898 * 5 2 1 7 7 H 1.09000 * 109.47305 * 53.78950 * 6 5 2 8 8 N 1.46507 * 109.47200 * 293.79413 * 6 5 2 9 9 C 1.34773 * 120.00246 * 155.00264 * 8 6 5 10 10 O 1.21283 * 119.99931 * 0.02562 * 9 8 6 11 11 C 1.50695 * 120.00203 * 179.97438 * 9 8 6 12 12 C 1.50698 * 109.47293 * 179.97438 * 11 9 8 13 13 C 1.37639 * 120.12797 * 265.00036 * 12 11 9 14 14 C 1.38610 * 120.25061 * 179.97438 * 13 12 11 15 15 C 1.38655 * 120.50023 * 0.02562 * 14 13 12 16 16 C 1.37597 * 120.25104 * 0.02669 * 15 14 13 17 17 C 1.40704 * 120.12952 * 84.72671 * 12 11 9 18 18 C 1.41389 * 120.23986 * 359.97438 * 17 12 11 19 19 H 1.07999 * 120.00717 * 334.07851 * 18 17 12 20 20 C 1.39953 * 119.99727 * 154.07953 * 18 17 12 21 21 N 1.30824 * 119.99993 * 343.72161 * 20 18 17 22 22 Si 1.86795 * 119.99756 * 163.72101 * 20 18 17 23 23 H 1.48502 * 109.47532 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47081 * 119.99902 * 22 20 18 25 25 H 1.48505 * 109.47168 * 239.99815 * 22 20 18 26 26 C 1.50702 * 109.47168 * 173.79479 * 6 5 2 27 27 O 1.20824 * 120.00259 * 120.27884 * 26 6 5 28 28 O 1.34228 * 119.99900 * 299.99924 * 26 6 5 29 29 H 1.09005 * 109.46763 * 290.24867 * 1 2 3 30 30 H 1.09003 * 109.47129 * 50.23942 * 1 2 3 31 31 H 1.08996 * 109.47454 * 170.24886 * 1 2 3 32 32 H 1.08997 * 109.47032 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46716 * 299.99964 * 3 2 1 34 34 H 1.08997 * 109.46752 * 59.99903 * 3 2 1 35 35 H 1.08989 * 109.47521 * 299.99798 * 4 2 1 36 36 H 1.09004 * 109.47199 * 60.00826 * 4 2 1 37 37 H 1.09009 * 109.46625 * 179.97438 * 4 2 1 38 38 H 1.09004 * 109.46884 * 306.21179 * 5 2 1 39 39 H 1.08995 * 109.47259 * 186.20996 * 5 2 1 40 40 H 0.97001 * 119.99770 * 334.99608 * 8 6 5 41 41 H 1.09001 * 109.46924 * 299.99670 * 11 9 8 42 42 H 1.08995 * 109.47164 * 59.99781 * 11 9 8 43 43 H 1.07997 * 119.87311 * 359.97438 * 13 12 11 44 44 H 1.08001 * 119.75155 * 179.97438 * 14 13 12 45 45 H 1.08006 * 119.87895 * 179.97438 * 15 14 13 46 46 H 1.07995 * 120.13329 * 179.97438 * 16 15 14 47 47 H 0.96999 * 119.99798 * 180.02562 * 21 20 18 48 48 H 0.96693 * 117.00184 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 6 1.6614 -2.2017 1.1737 7 1 2.0191 -2.6206 0.2331 8 7 0.2045 -2.3375 1.2460 9 6 -0.3988 -3.4188 0.7140 10 8 0.2645 -4.2798 0.1757 11 6 -1.8974 -3.5588 0.7889 12 6 -2.3156 -4.8453 0.1249 13 6 -2.7114 -4.8455 -1.1933 14 6 -3.0961 -6.0275 -1.8067 15 6 -3.0875 -7.2214 -1.1018 16 6 -2.6966 -7.2448 0.2173 17 6 -2.2975 -6.0519 0.8485 18 6 -1.8867 -6.0649 2.2013 19 1 -1.2138 -5.3042 2.5688 20 6 -2.3521 -7.0635 3.0644 21 7 -3.3915 -7.7843 2.7305 22 14 -1.4891 -7.3670 4.6930 23 1 -0.3498 -6.4249 4.8327 24 1 -2.4467 -7.1537 5.8079 25 1 -0.9853 -8.7634 4.7335 26 6 2.2926 -2.9410 2.3252 27 8 1.5972 -3.5260 3.1215 28 8 3.6277 -2.9544 2.4631 29 1 -0.3633 0.3557 0.9642 30 1 -0.3633 0.6573 -0.7900 31 1 -0.3634 -1.0128 -0.1740 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2494 38 1 1.5887 -0.2756 2.1358 39 1 3.1243 -0.6260 1.3066 40 1 -0.3260 -1.6491 1.6769 41 1 -2.2094 -3.5703 1.8332 42 1 -2.3668 -2.7177 0.2787 43 1 -2.7223 -3.9213 -1.7519 44 1 -3.4056 -6.0183 -2.8414 45 1 -3.3897 -8.1365 -1.5895 46 1 -2.6911 -8.1757 0.7647 47 1 -3.7143 -8.4762 3.3289 48 1 3.9863 -3.4422 3.2171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609655498.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:12 Heat of formation + Delta-G solvation = -120.917073 kcal Electronic energy + Delta-G solvation = -30048.925607 eV Core-core repulsion = 26068.080337 eV Total energy + Delta-G solvation = -3980.845270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.73179 -39.12524 -38.06561 -37.10083 -35.98207 -33.96845 -33.54577 -31.80249 -30.15545 -29.36846 -27.49636 -27.37240 -26.66799 -25.06914 -24.70189 -21.65455 -20.86253 -20.34184 -19.52279 -18.91431 -17.98721 -17.10762 -16.94892 -16.44901 -15.90247 -15.43593 -15.30479 -14.67435 -14.61718 -14.36765 -14.33878 -13.96035 -13.54017 -13.23206 -13.08456 -12.97259 -12.82161 -12.51576 -12.25930 -12.08792 -11.81768 -11.70021 -11.61812 -11.48650 -11.39718 -11.12499 -11.04152 -10.98946 -10.91076 -10.85920 -10.69845 -10.58994 -10.36482 -10.29950 -9.42569 -9.31616 -9.23333 -9.08471 -8.79054 -7.25696 -7.22810 -6.66449 -4.26078 2.33476 2.74190 2.87281 3.05642 3.14471 3.26017 3.33353 3.44317 3.63361 4.04303 4.40933 4.51112 4.61303 4.73465 4.96253 5.07239 5.21052 5.36455 5.43916 5.44609 5.54437 5.59293 5.63081 5.71012 5.76017 5.83699 5.85843 5.91648 6.05088 6.07346 6.16450 6.21891 6.26122 6.32653 6.47899 6.56040 6.58104 6.59060 6.85619 7.17719 7.36103 7.48667 7.69854 7.82184 7.98881 7.99748 8.16014 8.19787 8.38804 8.73209 8.80401 9.00174 9.08652 10.27400 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.004375 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.182155 B = 6398.502703 C = 8061.457153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.064 4.064 3 C -0.140 4.140 4 C -0.150 4.150 5 C -0.111 4.111 6 C 0.158 3.842 7 H 0.129 0.871 8 N -0.721 5.721 9 C 0.521 3.479 10 O -0.515 6.515 11 C -0.068 4.068 12 C -0.183 4.183 13 C -0.080 4.080 14 C -0.242 4.242 15 C -0.107 4.107 16 C -0.160 4.160 17 C 0.129 3.871 18 C -0.452 4.452 19 H 0.078 0.922 20 C 0.078 3.922 21 N -0.796 5.796 22 Si 0.898 3.102 23 H -0.257 1.257 24 H -0.275 1.275 25 H -0.273 1.273 26 C 0.456 3.544 27 O -0.491 6.491 28 O -0.522 6.522 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.404 0.596 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.117 0.883 47 H 0.278 0.722 48 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.764 16.382 -1.284 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.064 4.064 3 C -0.197 4.197 4 C -0.207 4.207 5 C -0.149 4.149 6 C 0.050 3.950 7 H 0.146 0.854 8 N -0.378 5.378 9 C 0.309 3.691 10 O -0.388 6.388 11 C -0.108 4.108 12 C -0.185 4.185 13 C -0.098 4.098 14 C -0.261 4.261 15 C -0.125 4.125 16 C -0.179 4.179 17 C 0.127 3.873 18 C -0.482 4.482 19 H 0.096 0.904 20 C -0.139 4.139 21 N -0.422 5.422 22 Si 0.723 3.277 23 H -0.181 1.181 24 H -0.201 1.201 25 H -0.198 1.198 26 C 0.295 3.705 27 O -0.376 6.376 28 O -0.333 6.333 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.240 0.760 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.134 0.866 47 H 0.089 0.911 48 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 9.714 15.584 -1.695 18.442 hybrid contribution 0.367 -0.375 1.625 1.707 sum 10.081 15.209 -0.070 18.247 Atomic orbital electron populations 1.22311 0.94233 1.03616 1.01556 1.20486 0.96241 0.95193 0.94508 1.21869 1.00903 0.95108 1.01839 1.22015 1.00984 1.00945 0.96799 1.21935 1.02723 0.91259 0.99011 1.20457 0.82795 0.95697 0.96047 0.85351 1.46284 1.04663 1.25318 1.61574 1.21349 0.91618 0.79681 0.76426 1.90684 1.66456 1.39115 1.42553 1.20258 0.89457 0.97833 1.03261 1.19025 1.11917 0.92700 0.94876 1.20276 0.99575 0.96058 0.93897 1.20280 1.13876 0.93598 0.98353 1.20669 1.00738 0.95966 0.95169 1.21304 1.04802 0.98686 0.93134 1.17348 0.87711 0.89849 0.92401 1.19593 1.24581 1.10052 0.93988 0.90393 1.25867 0.93468 0.94440 1.00159 1.69835 1.18246 1.17260 1.36820 0.86399 0.80720 0.79308 0.81287 1.18064 1.20074 1.19823 1.24355 0.80210 0.79105 0.86852 1.90797 1.63173 1.40706 1.42954 1.84501 1.24356 1.71534 1.52948 0.92694 0.92739 0.90466 0.92629 0.92461 0.92656 0.91761 0.92425 0.92469 0.90729 0.89181 0.76004 0.88391 0.90488 0.89799 0.89745 0.89670 0.86551 0.91120 0.73537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 7.04 37.16 0.26 -1.13 16 2 C -0.06 -0.53 0.80 -154.51 -0.12 -0.65 16 3 C -0.14 -0.95 8.46 37.16 0.31 -0.63 16 4 C -0.15 -1.38 7.94 37.16 0.30 -1.08 16 5 C -0.11 -0.99 3.94 -26.73 -0.11 -1.10 16 6 C 0.16 2.04 2.13 -69.08 -0.15 1.90 16 7 H 0.13 1.80 5.41 -51.93 -0.28 1.52 16 8 N -0.72 -10.34 2.35 -54.93 -0.13 -10.47 16 9 C 0.52 10.05 6.83 -10.99 -0.08 9.98 16 10 O -0.52 -12.21 15.70 5.56 0.09 -12.13 16 11 C -0.07 -1.35 5.18 -29.04 -0.15 -1.50 16 12 C -0.18 -4.46 4.43 -103.91 -0.46 -4.92 16 13 C -0.08 -1.85 9.66 -39.66 -0.38 -2.23 16 14 C -0.24 -5.69 10.05 -39.29 -0.39 -6.09 16 15 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 16 C -0.16 -4.38 8.69 -38.87 -0.34 -4.72 16 17 C 0.13 3.55 5.57 -106.82 -0.59 2.96 16 18 C -0.45 -12.47 8.15 -37.74 -0.31 -12.78 16 19 H 0.08 2.17 6.66 -52.49 -0.35 1.82 16 20 C 0.08 2.05 5.16 -17.34 -0.09 1.96 16 21 N -0.80 -21.22 10.94 55.55 0.61 -20.61 16 22 Si 0.90 20.16 29.59 -169.99 -5.03 15.13 16 23 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 C 0.46 6.88 7.66 36.01 0.28 7.15 16 27 O -0.49 -9.65 17.07 -18.75 -0.32 -9.97 16 28 O -0.52 -6.00 13.21 -39.25 -0.52 -6.52 16 29 H 0.05 0.41 7.73 -51.93 -0.40 0.01 16 30 H 0.05 0.45 8.12 -51.93 -0.42 0.02 16 31 H 0.08 0.82 5.46 -51.93 -0.28 0.53 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.73 6.20 -51.94 -0.32 0.41 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.09 0.72 7.96 -51.93 -0.41 0.31 16 40 H 0.40 4.68 6.98 -40.82 -0.29 4.39 16 41 H 0.10 1.96 7.08 -51.93 -0.37 1.59 16 42 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 43 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 46 H 0.12 3.29 6.19 -52.49 -0.32 2.96 16 47 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 48 H 0.41 3.21 9.10 45.56 0.41 3.63 16 LS Contribution 388.11 15.07 5.85 5.85 Total: -1.00 -34.55 388.11 -8.26 -42.81 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.39 Total: 11.85 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -2.42 Total: -15.95 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.48 Total: -31.08 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.75 Total: -28.61 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.55 -8.26 -42.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609655498.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.104 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds