Wall clock time and date at job start Tue Mar 31 2020 18:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47201 * 2 1 4 4 C 1.53000 * 109.46822 * 239.99820 * 2 1 3 5 5 C 1.53001 * 109.47245 * 120.00002 * 2 1 3 6 6 C 1.52992 * 109.47070 * 66.20898 * 5 2 1 7 7 H 1.09000 * 109.47305 * 53.78950 * 6 5 2 8 8 N 1.46507 * 109.47200 * 293.79413 * 6 5 2 9 9 C 1.34773 * 120.00246 * 155.00264 * 8 6 5 10 10 O 1.21283 * 119.99931 * 0.02562 * 9 8 6 11 11 C 1.50695 * 120.00203 * 179.97438 * 9 8 6 12 12 C 1.50698 * 109.47293 * 179.97438 * 11 9 8 13 13 C 1.37639 * 120.12797 * 265.00036 * 12 11 9 14 14 C 1.38610 * 120.25061 * 179.97438 * 13 12 11 15 15 C 1.38655 * 120.50023 * 0.02562 * 14 13 12 16 16 C 1.37597 * 120.25104 * 0.02669 * 15 14 13 17 17 C 1.40704 * 120.12952 * 84.72671 * 12 11 9 18 18 C 1.41389 * 120.23986 * 359.97438 * 17 12 11 19 19 H 1.07999 * 120.00717 * 334.07851 * 18 17 12 20 20 C 1.39953 * 119.99727 * 154.07953 * 18 17 12 21 21 N 1.30824 * 119.99993 * 343.72161 * 20 18 17 22 22 Si 1.86795 * 119.99756 * 163.72101 * 20 18 17 23 23 H 1.48502 * 109.47532 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47081 * 119.99902 * 22 20 18 25 25 H 1.48505 * 109.47168 * 239.99815 * 22 20 18 26 26 C 1.50702 * 109.47168 * 173.79479 * 6 5 2 27 27 O 1.20824 * 120.00259 * 120.27884 * 26 6 5 28 28 O 1.34228 * 119.99900 * 299.99924 * 26 6 5 29 29 H 1.09005 * 109.46763 * 290.24867 * 1 2 3 30 30 H 1.09003 * 109.47129 * 50.23942 * 1 2 3 31 31 H 1.08996 * 109.47454 * 170.24886 * 1 2 3 32 32 H 1.08997 * 109.47032 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46716 * 299.99964 * 3 2 1 34 34 H 1.08997 * 109.46752 * 59.99903 * 3 2 1 35 35 H 1.08989 * 109.47521 * 299.99798 * 4 2 1 36 36 H 1.09004 * 109.47199 * 60.00826 * 4 2 1 37 37 H 1.09009 * 109.46625 * 179.97438 * 4 2 1 38 38 H 1.09004 * 109.46884 * 306.21179 * 5 2 1 39 39 H 1.08995 * 109.47259 * 186.20996 * 5 2 1 40 40 H 0.97001 * 119.99770 * 334.99608 * 8 6 5 41 41 H 1.09001 * 109.46924 * 299.99670 * 11 9 8 42 42 H 1.08995 * 109.47164 * 59.99781 * 11 9 8 43 43 H 1.07997 * 119.87311 * 359.97438 * 13 12 11 44 44 H 1.08001 * 119.75155 * 179.97438 * 14 13 12 45 45 H 1.08006 * 119.87895 * 179.97438 * 15 14 13 46 46 H 1.07995 * 120.13329 * 179.97438 * 16 15 14 47 47 H 0.96999 * 119.99798 * 180.02562 * 21 20 18 48 48 H 0.96693 * 117.00184 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 6 1.6614 -2.2017 1.1737 7 1 2.0191 -2.6206 0.2331 8 7 0.2045 -2.3375 1.2460 9 6 -0.3988 -3.4188 0.7140 10 8 0.2645 -4.2798 0.1757 11 6 -1.8974 -3.5588 0.7889 12 6 -2.3156 -4.8453 0.1249 13 6 -2.7114 -4.8455 -1.1933 14 6 -3.0961 -6.0275 -1.8067 15 6 -3.0875 -7.2214 -1.1018 16 6 -2.6966 -7.2448 0.2173 17 6 -2.2975 -6.0519 0.8485 18 6 -1.8867 -6.0649 2.2013 19 1 -1.2138 -5.3042 2.5688 20 6 -2.3521 -7.0635 3.0644 21 7 -3.3915 -7.7843 2.7305 22 14 -1.4891 -7.3670 4.6930 23 1 -0.3498 -6.4249 4.8327 24 1 -2.4467 -7.1537 5.8079 25 1 -0.9853 -8.7634 4.7335 26 6 2.2926 -2.9410 2.3252 27 8 1.5972 -3.5260 3.1215 28 8 3.6277 -2.9544 2.4631 29 1 -0.3633 0.3557 0.9642 30 1 -0.3633 0.6573 -0.7900 31 1 -0.3634 -1.0128 -0.1740 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2494 38 1 1.5887 -0.2756 2.1358 39 1 3.1243 -0.6260 1.3066 40 1 -0.3260 -1.6491 1.6769 41 1 -2.2094 -3.5703 1.8332 42 1 -2.3668 -2.7177 0.2787 43 1 -2.7223 -3.9213 -1.7519 44 1 -3.4056 -6.0183 -2.8414 45 1 -3.3897 -8.1365 -1.5895 46 1 -2.6911 -8.1757 0.7647 47 1 -3.7143 -8.4762 3.3289 48 1 3.9863 -3.4422 3.2171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609655498.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:11 Heat of formation + Delta-G solvation = -142.101828 kcal Electronic energy + Delta-G solvation = -30049.844247 eV Core-core repulsion = 26068.080337 eV Total energy + Delta-G solvation = -3981.763910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.92583 -40.52404 -39.37137 -38.58267 -37.15557 -35.51314 -35.17448 -33.50721 -31.45424 -31.20694 -28.42025 -28.16696 -27.92942 -26.85260 -25.81469 -23.00995 -22.78832 -21.72452 -21.08653 -19.79699 -19.14789 -19.05167 -18.11359 -17.84403 -17.31616 -17.01181 -16.60073 -16.19659 -16.03793 -15.48307 -15.42608 -15.17190 -14.95281 -14.78337 -14.54119 -14.40434 -13.94254 -13.71385 -13.43532 -13.39203 -13.05918 -12.92223 -12.79086 -12.75148 -12.68577 -12.57889 -12.50561 -12.44243 -12.36977 -12.15713 -11.99141 -11.53632 -11.45872 -11.36413 -11.31338 -11.21078 -11.04700 -10.83532 -10.05368 -9.21845 -9.16048 -8.61901 -6.30010 0.96614 1.12360 1.14341 1.29581 1.44754 1.47664 1.57909 2.09649 2.17922 2.41499 2.76468 3.55643 3.74923 3.80650 3.93475 4.08262 4.17966 4.28423 4.32955 4.42304 4.47825 4.61965 4.67137 4.72221 4.76517 4.80747 4.84583 4.90077 4.97916 5.02569 5.07381 5.16441 5.18440 5.20289 5.28138 5.36520 5.38178 5.46216 5.52393 5.55166 5.57905 5.60916 5.78065 6.04024 6.18046 6.22255 6.42539 6.54745 6.75366 6.92255 6.99387 7.11252 7.36509 8.34295 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.004375 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.182155 B = 6398.502703 C = 8061.457153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.060 4.060 3 C -0.135 4.135 4 C -0.150 4.150 5 C -0.101 4.101 6 C 0.156 3.844 7 H 0.120 0.880 8 N -0.701 5.701 9 C 0.525 3.475 10 O -0.568 6.568 11 C -0.069 4.069 12 C -0.187 4.187 13 C -0.088 4.088 14 C -0.240 4.240 15 C -0.117 4.117 16 C -0.194 4.194 17 C 0.096 3.904 18 C -0.480 4.480 19 H 0.063 0.937 20 C 0.040 3.960 21 N -0.824 5.824 22 Si 0.963 3.037 23 H -0.275 1.275 24 H -0.256 1.256 25 H -0.265 1.265 26 C 0.459 3.541 27 O -0.545 6.545 28 O -0.507 6.507 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.418 0.582 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.286 0.714 48 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.473 19.162 -1.564 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.060 4.060 3 C -0.193 4.193 4 C -0.207 4.207 5 C -0.139 4.139 6 C 0.049 3.951 7 H 0.137 0.863 8 N -0.357 5.357 9 C 0.314 3.686 10 O -0.445 6.445 11 C -0.109 4.109 12 C -0.189 4.189 13 C -0.106 4.106 14 C -0.259 4.259 15 C -0.135 4.135 16 C -0.214 4.214 17 C 0.094 3.906 18 C -0.510 4.510 19 H 0.082 0.918 20 C -0.174 4.174 21 N -0.450 5.450 22 Si 0.785 3.215 23 H -0.200 1.200 24 H -0.180 1.180 25 H -0.190 1.190 26 C 0.300 3.700 27 O -0.434 6.434 28 O -0.319 6.319 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.258 0.742 41 H 0.109 0.891 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.123 0.877 46 H 0.113 0.887 47 H 0.096 0.904 48 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 10.437 18.418 -1.963 21.260 hybrid contribution 0.205 -1.158 1.572 1.963 sum 10.642 17.260 -0.391 20.281 Atomic orbital electron populations 1.22314 0.94535 1.02457 1.02639 1.20472 0.96001 0.96103 0.93470 1.21822 1.01370 0.93585 1.02483 1.22007 1.01567 0.99457 0.97674 1.21980 1.03853 0.87977 1.00092 1.20709 0.81375 0.98282 0.94751 0.86303 1.45996 1.05751 1.23982 1.59978 1.21134 0.91302 0.80010 0.76126 1.90660 1.67315 1.41223 1.45322 1.20280 0.90389 0.97285 1.02912 1.19522 1.10231 0.93568 0.95541 1.20733 0.98529 0.97612 0.93695 1.20731 1.12309 0.93089 0.99769 1.20950 1.00395 0.97711 0.94471 1.21295 1.07448 0.98187 0.94459 1.17713 0.88752 0.91148 0.93002 1.19611 1.25557 1.11057 0.94795 0.91844 1.26529 0.93806 0.93996 1.03086 1.69874 1.19089 1.17872 1.38194 0.85444 0.79190 0.78796 0.78022 1.19964 1.18043 1.19004 1.24732 0.80873 0.78002 0.86403 1.90790 1.64464 1.43074 1.45099 1.84456 1.22469 1.71292 1.53719 0.91276 0.92101 0.92588 0.91907 0.92131 0.91750 0.94454 0.91973 0.91582 0.89216 0.87581 0.74236 0.89133 0.86258 0.86115 0.86479 0.87681 0.88684 0.90376 0.71529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 7.04 71.98 0.51 -1.89 16 2 C -0.06 -0.83 0.80 -52.18 -0.04 -0.88 16 3 C -0.14 -1.35 8.46 71.98 0.61 -0.74 16 4 C -0.15 -2.50 7.94 71.98 0.57 -1.93 16 5 C -0.10 -1.54 3.94 30.59 0.12 -1.42 16 6 C 0.16 3.91 2.13 44.24 0.09 4.00 16 7 H 0.12 3.32 5.41 -2.39 -0.01 3.31 16 8 N -0.70 -19.65 2.35 -446.10 -1.05 -20.70 16 9 C 0.53 20.42 6.83 87.66 0.60 21.02 16 10 O -0.57 -27.70 15.70 -3.04 -0.05 -27.75 16 11 C -0.07 -2.71 5.18 29.10 0.15 -2.56 16 12 C -0.19 -9.15 4.43 -19.40 -0.09 -9.24 16 13 C -0.09 -3.93 9.66 22.22 0.21 -3.72 16 14 C -0.24 -10.95 10.05 22.46 0.23 -10.73 16 15 C -0.12 -5.86 10.02 22.22 0.22 -5.64 16 16 C -0.19 -11.07 8.69 22.73 0.20 -10.88 16 17 C 0.10 5.46 5.57 -21.29 -0.12 5.34 16 18 C -0.48 -27.68 8.15 23.46 0.19 -27.49 16 19 H 0.06 3.72 6.66 -2.91 -0.02 3.70 16 20 C 0.04 2.19 5.16 85.26 0.44 2.63 16 21 N -0.82 -45.50 10.94 21.83 0.24 -45.26 16 22 Si 0.96 42.84 29.59 68.60 2.03 44.87 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 C 0.46 13.62 7.66 71.24 0.55 14.17 16 27 O -0.54 -21.75 17.07 21.97 0.38 -21.37 16 28 O -0.51 -10.93 13.21 -51.40 -0.68 -11.61 16 29 H 0.07 0.81 7.73 -2.38 -0.02 0.80 16 30 H 0.06 0.83 8.12 -2.39 -0.02 0.81 16 31 H 0.06 1.07 5.46 -2.39 -0.01 1.06 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.04 0.83 6.20 -2.39 -0.01 0.81 16 36 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.09 1.14 8.10 -2.38 -0.02 1.13 16 39 H 0.11 1.34 7.96 -2.39 -0.02 1.32 16 40 H 0.42 9.07 6.98 -92.71 -0.65 8.43 16 41 H 0.09 3.68 7.08 -2.39 -0.02 3.67 16 42 H 0.12 3.53 8.05 -2.39 -0.02 3.51 16 43 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 44 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 45 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 46 H 0.10 5.69 6.19 -2.91 -0.02 5.67 16 47 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 48 H 0.42 6.11 9.10 -74.06 -0.67 5.43 16 Total: -1.00 -79.09 388.11 4.98 -74.11 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -0.33 Total: 37.65 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 4.44 Total: -29.94 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -0.81 Total: -65.96 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -0.35 Total: -60.73 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -79.09 4.98 -74.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609655498.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.997 kcal (2) G-P(sol) polarization free energy of solvation -79.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds