Wall clock time and date at job start Tue Mar 31 2020 18:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47155 * 2 1 4 4 C 1.53002 * 109.46930 * 239.99892 * 2 1 3 5 5 C 1.52999 * 109.46905 * 119.99949 * 2 1 3 6 6 C 1.53001 * 109.47357 * 53.96287 * 5 2 1 7 7 H 1.09004 * 109.46581 * 304.73021 * 6 5 2 8 8 N 1.46500 * 109.47338 * 64.72595 * 6 5 2 9 9 C 1.34777 * 119.99910 * 205.00271 * 8 6 5 10 10 O 1.21273 * 120.00179 * 0.02562 * 9 8 6 11 11 C 1.50704 * 119.99701 * 179.97438 * 9 8 6 12 12 C 1.50700 * 109.46970 * 179.97438 * 11 9 8 13 13 C 1.37639 * 120.12841 * 265.00249 * 12 11 9 14 14 C 1.38614 * 120.25156 * 180.29549 * 13 12 11 15 15 C 1.38662 * 120.49783 * 359.44860 * 14 13 12 16 16 C 1.37598 * 120.24472 * 0.55016 * 15 14 13 17 17 C 1.40694 * 120.12897 * 85.02108 * 12 11 9 18 18 C 1.41391 * 120.24277 * 359.96156 * 17 12 11 19 19 H 1.08001 * 120.00079 * 327.77996 * 18 17 12 20 20 C 1.39949 * 120.00289 * 147.78293 * 18 17 12 21 21 N 1.30822 * 119.99647 * 357.26258 * 20 18 17 22 22 Si 1.86797 * 120.00079 * 177.27057 * 20 18 17 23 23 H 1.48499 * 109.47492 * 89.99730 * 22 20 18 24 24 H 1.48502 * 109.47088 * 209.99862 * 22 20 18 25 25 H 1.48504 * 109.47165 * 329.99518 * 22 20 18 26 26 C 1.50698 * 109.47261 * 184.72809 * 6 5 2 27 27 O 1.20818 * 120.00179 * 239.99409 * 26 6 5 28 28 O 1.34230 * 119.99704 * 60.00052 * 26 6 5 29 29 H 1.09000 * 109.46584 * 300.00269 * 1 2 3 30 30 H 1.08995 * 109.47060 * 60.00014 * 1 2 3 31 31 H 1.09000 * 109.47340 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46720 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47008 * 300.00190 * 3 2 1 34 34 H 1.08994 * 109.47154 * 60.00314 * 3 2 1 35 35 H 1.09004 * 109.46829 * 313.05144 * 4 2 1 36 36 H 1.08996 * 109.47279 * 73.04960 * 4 2 1 37 37 H 1.08994 * 109.46892 * 193.05044 * 4 2 1 38 38 H 1.08998 * 109.47280 * 293.96088 * 5 2 1 39 39 H 1.09004 * 109.46609 * 173.95481 * 5 2 1 40 40 H 0.96996 * 120.00131 * 25.00211 * 8 6 5 41 41 H 1.09000 * 109.47109 * 60.00603 * 11 9 8 42 42 H 1.08997 * 109.47456 * 300.00116 * 11 9 8 43 43 H 1.08004 * 119.87950 * 0.02562 * 13 12 11 44 44 H 1.07991 * 119.75486 * 179.70046 * 14 13 12 45 45 H 1.07999 * 119.87675 * 180.30098 * 15 14 13 46 46 H 1.08004 * 120.12692 * 179.75061 * 16 15 14 47 47 H 0.96999 * 120.00061 * 179.97438 * 21 20 18 48 48 H 0.96697 * 116.99661 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2493 6 6 1.4099 -2.1133 1.3275 7 1 0.3241 -2.0229 1.2951 8 7 1.8667 -2.9205 0.1935 9 6 1.1148 -3.9481 -0.2484 10 8 0.0600 -4.2042 0.2924 11 6 1.5844 -4.7781 -1.4153 12 6 0.5704 -5.8543 -1.7067 13 6 0.7261 -7.1131 -1.1723 14 6 -0.2017 -8.1065 -1.4436 15 6 -1.3017 -7.8421 -2.2454 16 6 -1.4775 -6.5909 -2.7903 17 6 -0.5388 -5.5762 -2.5263 18 6 -0.7093 -4.2866 -3.0804 19 1 -0.3699 -3.4165 -2.5380 20 6 -1.3179 -4.1375 -4.3318 21 7 -1.6805 -5.1940 -5.0128 22 14 -1.6122 -2.4300 -5.0298 23 1 -0.4332 -2.0124 -5.8303 24 1 -2.8173 -2.4509 -5.8974 25 1 -1.8203 -1.4693 -3.9167 26 6 1.8205 -2.7789 2.6156 27 8 2.4318 -3.8207 2.5892 28 8 1.5069 -2.2144 3.7924 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.4996 -1.6599 -1.3729 36 1 1.8787 -0.0912 -2.1239 37 1 3.1049 -0.9267 -1.1409 38 1 1.7676 -0.1488 2.1359 39 1 3.1247 -0.8159 1.1967 40 1 2.7101 -2.7155 -0.2393 41 1 2.5421 -5.2382 -1.1719 42 1 1.7000 -4.1404 -2.2917 43 1 1.5767 -7.3289 -0.5427 44 1 -0.0692 -9.0927 -1.0240 45 1 -2.0210 -8.6223 -2.4462 46 1 -2.3328 -6.3882 -3.4178 47 1 -2.1027 -5.0908 -5.8799 48 1 1.7919 -2.6782 4.5915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609655499.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:17 Heat of formation + Delta-G solvation = -121.392515 kcal Electronic energy + Delta-G solvation = -30199.579899 eV Core-core repulsion = 26218.714013 eV Total energy + Delta-G solvation = -3980.865887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.78545 -39.17921 -38.03361 -37.11124 -36.08826 -33.95413 -33.52620 -31.81765 -30.15495 -29.36355 -27.38153 -27.27579 -26.67374 -25.07729 -24.73780 -21.69895 -20.84682 -20.36758 -19.52078 -18.88432 -18.08798 -17.14541 -16.95499 -16.46412 -15.93745 -15.50919 -15.27242 -14.68643 -14.54452 -14.36939 -14.31122 -13.90875 -13.55568 -13.22048 -13.13535 -12.96698 -12.76653 -12.53378 -12.20027 -12.03237 -11.73579 -11.67720 -11.56919 -11.52396 -11.47498 -11.13436 -11.03882 -10.97815 -10.97111 -10.77262 -10.65689 -10.58110 -10.40919 -10.32810 -9.46906 -9.36989 -9.25247 -9.15089 -8.79930 -7.26437 -7.16184 -6.59483 -4.33415 2.22188 2.71221 2.84175 3.02096 3.08889 3.12610 3.28287 3.40617 3.64140 3.98128 4.44041 4.57754 4.68918 4.75629 5.02653 5.12627 5.21973 5.39299 5.46148 5.52565 5.58306 5.64039 5.72797 5.76936 5.83211 5.86289 5.98308 6.01363 6.04959 6.14674 6.19133 6.33237 6.33773 6.39456 6.46323 6.47008 6.55867 6.58231 6.83225 7.16088 7.35125 7.48178 7.68813 7.81477 7.88915 7.96896 8.13725 8.16817 8.37377 8.70295 8.79159 8.98185 9.06373 10.32778 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010214 B = 0.005024 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.649110 B = 5571.949881 C = 7748.789796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.064 4.064 3 C -0.139 4.139 4 C -0.160 4.160 5 C -0.110 4.110 6 C 0.156 3.844 7 H 0.131 0.869 8 N -0.721 5.721 9 C 0.522 3.478 10 O -0.516 6.516 11 C -0.070 4.070 12 C -0.173 4.173 13 C -0.086 4.086 14 C -0.231 4.231 15 C -0.112 4.112 16 C -0.149 4.149 17 C 0.126 3.874 18 C -0.456 4.456 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.809 5.809 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.262 1.262 26 C 0.463 3.537 27 O -0.503 6.503 28 O -0.519 6.519 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.404 0.596 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.123 0.877 47 H 0.277 0.723 48 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.179 12.554 8.781 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.064 4.064 3 C -0.197 4.197 4 C -0.218 4.218 5 C -0.148 4.148 6 C 0.048 3.952 7 H 0.148 0.852 8 N -0.378 5.378 9 C 0.310 3.690 10 O -0.389 6.389 11 C -0.110 4.110 12 C -0.175 4.175 13 C -0.105 4.105 14 C -0.250 4.250 15 C -0.131 4.131 16 C -0.169 4.169 17 C 0.124 3.876 18 C -0.487 4.487 19 H 0.091 0.909 20 C -0.142 4.142 21 N -0.436 5.436 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.186 1.186 26 C 0.302 3.698 27 O -0.390 6.390 28 O -0.330 6.330 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.241 0.759 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.141 0.859 47 H 0.088 0.912 48 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 7.322 12.195 8.566 16.604 hybrid contribution 0.476 0.367 0.049 0.603 sum 7.797 12.563 8.615 17.113 Atomic orbital electron populations 1.22023 0.94062 1.02869 1.01885 1.20490 0.96237 0.95180 0.94528 1.21868 1.00795 0.95125 1.01882 1.22324 1.00712 1.02130 0.96612 1.21934 1.00568 0.92389 0.99896 1.20482 1.03172 0.90170 0.81337 0.85177 1.46280 1.25819 1.33549 1.32198 1.21308 0.83903 0.78994 0.84778 1.90683 1.22726 1.67610 1.57877 1.20276 0.98403 0.96701 0.95585 1.19140 0.97688 0.92783 1.07873 1.20336 0.97867 0.93596 0.98653 1.20360 0.99238 0.97846 1.07540 1.20734 0.97039 0.96796 0.98522 1.21459 1.00441 0.92747 1.02226 1.17365 0.88447 0.93287 0.88549 1.19418 1.34422 0.93308 1.01578 0.90921 1.25840 0.93172 0.98117 0.97098 1.69770 1.31615 1.30181 1.12080 0.86364 0.78538 0.82773 0.79353 1.19588 1.20320 1.18615 1.24404 0.75802 0.83548 0.86022 1.90717 1.37599 1.22960 1.87687 1.84532 1.75697 1.55803 1.16976 0.92580 0.92289 0.91581 0.92726 0.92393 0.92685 0.90227 0.92577 0.92828 0.89204 0.90821 0.75918 0.90385 0.88301 0.89704 0.89653 0.89556 0.85883 0.91223 0.73578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 7.92 37.16 0.29 -1.40 16 2 C -0.06 -0.62 0.80 -154.51 -0.12 -0.74 16 3 C -0.14 -1.10 8.43 37.16 0.31 -0.79 16 4 C -0.16 -1.70 7.03 37.16 0.26 -1.44 16 5 C -0.11 -1.02 3.94 -26.73 -0.11 -1.12 16 6 C 0.16 2.02 2.11 -69.08 -0.15 1.88 16 7 H 0.13 1.89 5.49 -51.93 -0.29 1.60 16 8 N -0.72 -10.35 2.37 -54.93 -0.13 -10.48 16 9 C 0.52 10.07 6.85 -10.98 -0.08 9.99 16 10 O -0.52 -12.22 15.70 5.56 0.09 -12.13 16 11 C -0.07 -1.38 5.20 -29.03 -0.15 -1.53 16 12 C -0.17 -4.20 4.43 -103.91 -0.46 -4.66 16 13 C -0.09 -2.05 9.66 -39.66 -0.38 -2.43 16 14 C -0.23 -5.49 10.05 -39.29 -0.39 -5.88 16 15 C -0.11 -2.78 10.02 -39.66 -0.40 -3.18 16 16 C -0.15 -4.02 8.65 -38.87 -0.34 -4.35 16 17 C 0.13 3.35 5.55 -106.83 -0.59 2.76 16 18 C -0.46 -11.80 8.00 -37.74 -0.30 -12.10 16 19 H 0.07 1.81 6.87 -52.49 -0.36 1.45 16 20 C 0.07 1.82 5.36 -17.34 -0.09 1.72 16 21 N -0.81 -20.95 10.70 55.55 0.59 -20.36 16 22 Si 0.90 18.63 29.56 -169.99 -5.02 13.60 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 26 C 0.46 6.45 7.66 36.00 0.28 6.73 16 27 O -0.50 -8.79 17.08 -18.74 -0.32 -9.11 16 28 O -0.52 -5.44 13.24 -39.26 -0.52 -5.96 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.90 6.23 -51.93 -0.32 0.58 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 1.04 5.61 -51.93 -0.29 0.74 16 36 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.05 0.47 7.47 -51.93 -0.39 0.08 16 38 H 0.09 0.74 8.00 -51.93 -0.42 0.32 16 39 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 40 H 0.40 4.70 6.75 -40.82 -0.28 4.42 16 41 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 42 H 0.10 1.85 7.17 -51.93 -0.37 1.48 16 43 H 0.08 1.82 8.06 -52.48 -0.42 1.40 16 44 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 46 H 0.12 3.41 6.20 -52.48 -0.33 3.09 16 47 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 48 H 0.41 2.64 9.10 45.56 0.41 3.05 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -33.14 387.89 -8.28 -41.42 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -6.40 Total: 13.74 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -2.42 Total: -16.55 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.46 Total: -30.84 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.75 Total: -27.21 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.60 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.14 -8.28 -41.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609655499.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.975 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds