Wall clock time and date at job start Tue Mar 31 2020 18:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47155 * 2 1 4 4 C 1.53002 * 109.46930 * 239.99892 * 2 1 3 5 5 C 1.52999 * 109.46905 * 119.99949 * 2 1 3 6 6 C 1.53001 * 109.47357 * 53.96287 * 5 2 1 7 7 H 1.09004 * 109.46581 * 304.73021 * 6 5 2 8 8 N 1.46500 * 109.47338 * 64.72595 * 6 5 2 9 9 C 1.34777 * 119.99910 * 205.00271 * 8 6 5 10 10 O 1.21273 * 120.00179 * 0.02562 * 9 8 6 11 11 C 1.50704 * 119.99701 * 179.97438 * 9 8 6 12 12 C 1.50700 * 109.46970 * 179.97438 * 11 9 8 13 13 C 1.37639 * 120.12841 * 265.00249 * 12 11 9 14 14 C 1.38614 * 120.25156 * 180.29549 * 13 12 11 15 15 C 1.38662 * 120.49783 * 359.44860 * 14 13 12 16 16 C 1.37598 * 120.24472 * 0.55016 * 15 14 13 17 17 C 1.40694 * 120.12897 * 85.02108 * 12 11 9 18 18 C 1.41391 * 120.24277 * 359.96156 * 17 12 11 19 19 H 1.08001 * 120.00079 * 327.77996 * 18 17 12 20 20 C 1.39949 * 120.00289 * 147.78293 * 18 17 12 21 21 N 1.30822 * 119.99647 * 357.26258 * 20 18 17 22 22 Si 1.86797 * 120.00079 * 177.27057 * 20 18 17 23 23 H 1.48499 * 109.47492 * 89.99730 * 22 20 18 24 24 H 1.48502 * 109.47088 * 209.99862 * 22 20 18 25 25 H 1.48504 * 109.47165 * 329.99518 * 22 20 18 26 26 C 1.50698 * 109.47261 * 184.72809 * 6 5 2 27 27 O 1.20818 * 120.00179 * 239.99409 * 26 6 5 28 28 O 1.34230 * 119.99704 * 60.00052 * 26 6 5 29 29 H 1.09000 * 109.46584 * 300.00269 * 1 2 3 30 30 H 1.08995 * 109.47060 * 60.00014 * 1 2 3 31 31 H 1.09000 * 109.47340 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46720 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47008 * 300.00190 * 3 2 1 34 34 H 1.08994 * 109.47154 * 60.00314 * 3 2 1 35 35 H 1.09004 * 109.46829 * 313.05144 * 4 2 1 36 36 H 1.08996 * 109.47279 * 73.04960 * 4 2 1 37 37 H 1.08994 * 109.46892 * 193.05044 * 4 2 1 38 38 H 1.08998 * 109.47280 * 293.96088 * 5 2 1 39 39 H 1.09004 * 109.46609 * 173.95481 * 5 2 1 40 40 H 0.96996 * 120.00131 * 25.00211 * 8 6 5 41 41 H 1.09000 * 109.47109 * 60.00603 * 11 9 8 42 42 H 1.08997 * 109.47456 * 300.00116 * 11 9 8 43 43 H 1.08004 * 119.87950 * 0.02562 * 13 12 11 44 44 H 1.07991 * 119.75486 * 179.70046 * 14 13 12 45 45 H 1.07999 * 119.87675 * 180.30098 * 15 14 13 46 46 H 1.08004 * 120.12692 * 179.75061 * 16 15 14 47 47 H 0.96999 * 120.00061 * 179.97438 * 21 20 18 48 48 H 0.96697 * 116.99661 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2493 6 6 1.4099 -2.1133 1.3275 7 1 0.3241 -2.0229 1.2951 8 7 1.8667 -2.9205 0.1935 9 6 1.1148 -3.9481 -0.2484 10 8 0.0600 -4.2042 0.2924 11 6 1.5844 -4.7781 -1.4153 12 6 0.5704 -5.8543 -1.7067 13 6 0.7261 -7.1131 -1.1723 14 6 -0.2017 -8.1065 -1.4436 15 6 -1.3017 -7.8421 -2.2454 16 6 -1.4775 -6.5909 -2.7903 17 6 -0.5388 -5.5762 -2.5263 18 6 -0.7093 -4.2866 -3.0804 19 1 -0.3699 -3.4165 -2.5380 20 6 -1.3179 -4.1375 -4.3318 21 7 -1.6805 -5.1940 -5.0128 22 14 -1.6122 -2.4300 -5.0298 23 1 -0.4332 -2.0124 -5.8303 24 1 -2.8173 -2.4509 -5.8974 25 1 -1.8203 -1.4693 -3.9167 26 6 1.8205 -2.7789 2.6156 27 8 2.4318 -3.8207 2.5892 28 8 1.5069 -2.2144 3.7924 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.4996 -1.6599 -1.3729 36 1 1.8787 -0.0912 -2.1239 37 1 3.1049 -0.9267 -1.1409 38 1 1.7676 -0.1488 2.1359 39 1 3.1247 -0.8159 1.1967 40 1 2.7101 -2.7155 -0.2393 41 1 2.5421 -5.2382 -1.1719 42 1 1.7000 -4.1404 -2.2917 43 1 1.5767 -7.3289 -0.5427 44 1 -0.0692 -9.0927 -1.0240 45 1 -2.0210 -8.6223 -2.4462 46 1 -2.3328 -6.3882 -3.4178 47 1 -2.1027 -5.0908 -5.8799 48 1 1.7919 -2.6782 4.5915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609655499.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:16 Heat of formation + Delta-G solvation = -141.019640 kcal Electronic energy + Delta-G solvation = -30200.430995 eV Core-core repulsion = 26218.714013 eV Total energy + Delta-G solvation = -3981.716983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.92546 -40.52528 -39.37335 -38.59709 -37.13969 -35.43204 -35.16778 -33.51269 -31.42306 -31.20962 -28.44127 -28.20168 -27.93654 -26.83685 -25.81086 -23.01001 -22.75414 -21.72466 -21.09812 -19.82386 -19.15568 -19.00841 -18.07972 -17.84168 -17.37195 -16.92087 -16.55214 -16.20286 -16.00248 -15.49358 -15.42429 -15.17810 -14.96681 -14.74122 -14.58128 -14.35189 -13.95727 -13.72050 -13.45966 -13.34301 -13.10271 -12.80451 -12.78323 -12.75849 -12.66726 -12.56416 -12.49630 -12.44571 -12.37264 -12.09174 -11.99203 -11.55210 -11.47518 -11.36879 -11.34529 -11.23792 -11.02355 -10.83838 -10.05362 -9.18535 -9.10467 -8.47428 -6.30475 0.99180 1.13400 1.14016 1.38447 1.50494 1.53182 1.59892 2.03668 2.24010 2.45532 2.85404 3.55573 3.73761 3.79889 3.92246 4.08968 4.17080 4.26512 4.33289 4.39073 4.47952 4.60955 4.65192 4.69925 4.75237 4.79331 4.81683 4.87521 4.96413 4.99187 5.05776 5.14315 5.16968 5.23344 5.26646 5.36137 5.40945 5.45310 5.49791 5.56068 5.57503 5.60151 5.80062 6.04638 6.19868 6.20811 6.44096 6.55006 6.76816 6.93693 7.03736 7.12732 7.36437 8.46837 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010214 B = 0.005024 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.649110 B = 5571.949881 C = 7748.789796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.061 4.061 3 C -0.134 4.134 4 C -0.164 4.164 5 C -0.099 4.099 6 C 0.152 3.848 7 H 0.113 0.887 8 N -0.701 5.701 9 C 0.526 3.474 10 O -0.569 6.569 11 C -0.070 4.070 12 C -0.179 4.179 13 C -0.100 4.100 14 C -0.235 4.235 15 C -0.122 4.122 16 C -0.182 4.182 17 C 0.095 3.905 18 C -0.476 4.476 19 H 0.073 0.927 20 C 0.031 3.969 21 N -0.841 5.841 22 Si 0.973 3.027 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.261 1.261 26 C 0.468 3.532 27 O -0.543 6.543 28 O -0.506 6.506 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.419 0.581 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.282 0.718 48 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.270 14.781 9.793 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.061 4.061 3 C -0.191 4.191 4 C -0.221 4.221 5 C -0.137 4.137 6 C 0.045 3.955 7 H 0.130 0.870 8 N -0.357 5.357 9 C 0.315 3.685 10 O -0.447 6.447 11 C -0.110 4.110 12 C -0.181 4.181 13 C -0.118 4.118 14 C -0.254 4.254 15 C -0.141 4.141 16 C -0.202 4.202 17 C 0.092 3.908 18 C -0.507 4.507 19 H 0.091 0.909 20 C -0.181 4.181 21 N -0.469 5.469 22 Si 0.795 3.205 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.185 1.185 26 C 0.309 3.691 27 O -0.433 6.433 28 O -0.318 6.318 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.259 0.741 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.092 0.908 48 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 9.458 14.456 9.605 19.766 hybrid contribution -0.169 -0.358 -0.161 0.427 sum 9.289 14.098 9.445 19.346 Atomic orbital electron populations 1.22022 0.95663 1.00839 1.02337 1.20472 0.94863 0.96551 0.94180 1.21816 1.01645 0.93349 1.02338 1.22342 1.01765 1.00794 0.97217 1.21966 1.01455 0.89756 1.00506 1.20666 1.02583 0.91760 0.80495 0.86955 1.45974 1.25570 1.31908 1.32258 1.21096 0.83450 0.79667 0.84314 1.90661 1.24989 1.69441 1.59578 1.20295 0.98320 0.96092 0.96281 1.19600 0.97735 0.94316 1.06402 1.20729 0.98735 0.93514 0.98787 1.20734 0.98613 0.99237 1.06815 1.20987 0.98013 0.96576 0.98486 1.21466 1.00680 0.94300 1.03737 1.17750 0.89451 0.93819 0.89731 1.19569 1.35653 0.93154 1.02326 0.90925 1.26674 0.92412 1.02007 0.97031 1.69865 1.32150 1.32302 1.12569 0.85327 0.78874 0.77753 0.78590 1.18043 1.19881 1.18467 1.24431 0.74846 0.82792 0.87008 1.90707 1.39692 1.24561 1.88354 1.84476 1.74968 1.55412 1.16980 0.91093 0.92908 0.94792 0.91302 0.92686 0.91583 0.93091 0.92761 0.90571 0.87267 0.88677 0.74137 0.87566 0.87674 0.87254 0.86852 0.87648 0.87869 0.90755 0.71271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 7.92 71.98 0.57 -2.70 16 2 C -0.06 -1.02 0.80 -52.18 -0.04 -1.06 16 3 C -0.13 -1.66 8.43 71.98 0.61 -1.05 16 4 C -0.16 -3.17 7.03 71.98 0.51 -2.66 16 5 C -0.10 -1.54 3.94 30.59 0.12 -1.42 16 6 C 0.15 3.76 2.11 44.24 0.09 3.85 16 7 H 0.11 3.29 5.49 -2.38 -0.01 3.28 16 8 N -0.70 -19.49 2.37 -446.10 -1.06 -20.54 16 9 C 0.53 20.41 6.85 87.66 0.60 21.01 16 10 O -0.57 -27.78 15.70 -3.01 -0.05 -27.83 16 11 C -0.07 -2.76 5.20 29.10 0.15 -2.60 16 12 C -0.18 -8.80 4.43 -19.41 -0.09 -8.89 16 13 C -0.10 -4.70 9.66 22.22 0.21 -4.48 16 14 C -0.23 -11.11 10.05 22.46 0.23 -10.88 16 15 C -0.12 -6.18 10.02 22.22 0.22 -5.96 16 16 C -0.18 -10.24 8.65 22.73 0.20 -10.05 16 17 C 0.09 5.23 5.55 -21.29 -0.12 5.11 16 18 C -0.48 -25.50 8.00 23.46 0.19 -25.31 16 19 H 0.07 3.75 6.87 -2.91 -0.02 3.73 16 20 C 0.03 1.57 5.36 85.26 0.46 2.03 16 21 N -0.84 -45.05 10.70 21.83 0.23 -44.82 16 22 Si 0.97 38.71 29.56 68.60 2.03 40.73 16 23 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 24 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 25 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 26 C 0.47 12.32 7.66 71.24 0.55 12.86 16 27 O -0.54 -18.38 17.08 21.99 0.38 -18.01 16 28 O -0.51 -9.39 13.24 -51.42 -0.68 -10.07 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.03 0.95 6.23 -2.39 -0.01 0.93 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.05 1.29 5.61 -2.38 -0.01 1.28 16 36 H 0.05 1.06 8.08 -2.39 -0.02 1.04 16 37 H 0.08 1.09 7.47 -2.39 -0.02 1.07 16 38 H 0.11 1.35 8.00 -2.39 -0.02 1.34 16 39 H 0.09 1.14 8.07 -2.38 -0.02 1.12 16 40 H 0.42 8.95 6.75 -92.71 -0.63 8.33 16 41 H 0.11 3.48 8.05 -2.39 -0.02 3.46 16 42 H 0.11 3.94 7.17 -2.39 -0.02 3.93 16 43 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 44 H 0.11 4.62 8.06 -2.92 -0.02 4.60 16 45 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 46 H 0.10 6.08 6.20 -2.91 -0.02 6.06 16 47 H 0.28 13.82 8.30 -92.71 -0.77 13.05 16 48 H 0.43 4.44 9.10 -74.06 -0.67 3.77 16 Total: -1.00 -75.30 387.89 5.00 -70.30 By element: Atomic # 1 Polarization: 42.75 SS G_CDS: -0.31 Total: 42.44 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 4.45 Total: -32.21 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.82 Total: -65.36 kcal Atomic # 8 Polarization: -55.56 SS G_CDS: -0.35 Total: -55.91 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.73 kcal Total: -75.30 5.00 -70.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609655499.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.715 kcal (2) G-P(sol) polarization free energy of solvation -75.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds