Wall clock time and date at job start Tue Mar 31 2020 17:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 110.83342 * 2 1 4 4 C 1.55223 * 110.88628 * 236.21773 * 2 1 3 5 5 O 1.44379 * 103.56794 * 278.74818 * 4 2 1 6 6 C 1.43749 * 106.97508 * 320.01153 * 5 4 2 7 7 H 1.09000 * 110.00804 * 267.01833 * 6 5 4 8 8 C 1.53001 * 109.87566 * 145.93703 * 6 5 4 9 9 C 1.50697 * 109.47350 * 67.17348 * 8 6 5 10 10 O 1.21280 * 120.00109 * 359.97438 * 9 8 6 11 11 N 1.34774 * 120.00159 * 180.02562 * 9 8 6 12 12 C 1.46494 * 120.00301 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47591 * 179.97438 * 12 11 9 14 14 C 1.38324 * 119.96712 * 269.72825 * 13 12 11 15 15 C 1.38277 * 120.13792 * 179.76809 * 14 13 12 16 16 C 1.38120 * 120.07316 * 0.49973 * 15 14 13 17 17 C 1.38870 * 119.92590 * 359.75090 * 16 15 14 18 18 O 1.35751 * 120.06595 * 180.02562 * 17 16 15 19 19 C 1.34823 * 117.00002 * 354.44363 * 18 17 16 20 20 H 1.08001 * 120.00705 * 5.05069 * 19 18 17 21 21 C 1.38658 * 119.99839 * 185.05977 * 19 18 17 22 22 N 1.31559 * 119.99969 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99954 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46849 * 90.00448 * 23 21 19 25 25 H 1.48500 * 109.47071 * 210.00173 * 23 21 19 26 26 H 1.48498 * 109.47222 * 330.00368 * 23 21 19 27 27 C 1.38086 * 119.96433 * 89.99413 * 13 12 11 28 28 C 1.54106 * 107.29015 * 26.51640 * 6 5 4 29 29 H 1.09004 * 109.46771 * 296.35604 * 1 2 3 30 30 H 1.09004 * 109.46661 * 56.34407 * 1 2 3 31 31 H 1.08998 * 109.47206 * 176.35075 * 1 2 3 32 32 H 1.08996 * 109.47198 * 183.64847 * 3 2 1 33 33 H 1.09000 * 109.47767 * 303.65044 * 3 2 1 34 34 H 1.09002 * 109.46935 * 63.64902 * 3 2 1 35 35 H 1.09006 * 110.51898 * 160.25547 * 4 2 1 36 36 H 1.08997 * 110.78410 * 37.37063 * 4 2 1 37 37 H 1.09001 * 109.47022 * 187.17901 * 8 6 5 38 38 H 1.09009 * 109.47071 * 307.16862 * 8 6 5 39 39 H 0.97001 * 119.99830 * 359.97438 * 11 9 8 40 40 H 1.08998 * 109.46777 * 299.99667 * 12 11 9 41 41 H 1.09004 * 109.47057 * 59.99214 * 12 11 9 42 42 H 1.08000 * 119.92722 * 359.97438 * 14 13 12 43 43 H 1.08003 * 119.96601 * 180.22947 * 15 14 13 44 44 H 1.07997 * 120.03859 * 179.72984 * 16 15 14 45 45 H 0.97003 * 119.99777 * 179.97438 * 22 21 19 46 46 H 1.07992 * 120.03689 * 0.02562 * 27 13 12 47 47 H 1.08993 * 110.48545 * 116.64374 * 28 6 5 48 48 H 1.08999 * 110.48545 * 239.15763 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0742 1.4299 0.0000 4 6 2.0834 -0.8064 -1.2054 5 8 2.0048 -2.1776 -0.7603 6 6 2.3976 -2.1933 0.6224 7 1 3.4654 -2.3962 0.7044 8 6 1.6054 -3.2635 1.3761 9 6 2.0114 -4.6288 0.8840 10 8 2.8512 -4.7354 0.0155 11 7 1.4404 -5.7313 1.4081 12 6 1.8355 -7.0586 0.9302 13 6 1.0552 -8.1127 1.6724 14 6 1.5574 -8.6460 2.8458 15 6 0.8421 -9.6099 3.5323 16 6 -0.3718 -10.0508 3.0426 17 6 -0.8762 -9.5211 1.8621 18 8 -2.0693 -9.9519 1.3785 19 6 -2.6591 -10.9758 2.0277 20 1 -2.2233 -11.3611 2.9376 21 6 -3.8253 -11.5344 1.5269 22 7 -4.4011 -12.5331 2.1607 23 14 -4.5794 -10.8677 -0.0467 24 1 -4.0223 -11.6009 -1.2118 25 1 -6.0526 -11.0500 -0.0055 26 1 -4.2628 -9.4225 -0.1738 27 6 -0.1578 -8.5492 1.1776 28 6 2.0824 -0.8014 1.2038 29 1 -0.3633 0.4563 0.9209 30 1 -0.3633 0.5696 -0.8555 31 1 -0.3633 -1.0256 -0.0654 32 1 3.1619 1.4047 -0.0654 33 1 1.6712 1.9721 -0.8554 34 1 1.7770 1.9317 0.9209 35 1 3.1174 -0.5277 -1.4091 36 1 1.4647 -0.6538 -2.0896 37 1 1.8133 -3.1852 2.4432 38 1 0.5394 -3.1166 1.2019 39 1 0.7684 -5.6461 2.1025 40 1 1.6283 -7.1368 -0.1371 41 1 2.9013 -7.2054 1.1051 42 1 2.5085 -8.3063 3.2282 43 1 1.2351 -10.0217 4.4501 44 1 -0.9279 -10.8068 3.5769 45 1 -5.2172 -12.9236 1.8105 46 1 -0.5472 -8.1359 0.2590 47 1 1.3303 -0.8773 1.9890 48 1 2.9890 -0.3347 1.5891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647398670.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:35 Heat of formation + Delta-G solvation = -118.671141 kcal Electronic energy + Delta-G solvation = -27718.671027 eV Core-core repulsion = 23737.923148 eV Total energy + Delta-G solvation = -3980.747879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.31996 -40.94650 -40.12383 -38.56202 -35.77025 -35.35694 -34.46014 -33.41207 -32.14209 -30.99827 -28.74063 -28.18154 -27.38835 -26.95504 -26.25775 -23.36221 -22.71423 -22.19519 -21.30276 -20.37404 -19.71670 -19.08530 -18.06094 -17.18550 -17.01296 -16.86811 -16.62019 -16.50938 -16.16301 -15.93680 -15.68275 -15.56367 -15.06649 -14.95849 -14.57667 -14.47200 -14.30845 -14.21405 -13.86293 -13.79473 -13.53459 -13.45755 -13.11875 -12.82739 -12.79256 -12.60424 -12.48057 -12.43305 -12.38952 -12.25201 -11.95304 -11.72295 -11.56241 -11.45255 -11.33394 -10.95327 -10.85878 -10.50022 -10.07778 -9.78998 -9.13488 -8.51062 -6.23683 0.34374 0.63444 1.30752 1.34153 1.50490 1.71757 2.26506 2.28571 2.78757 2.96636 2.98262 3.15463 3.47962 3.72123 3.76535 3.90277 3.96249 3.98450 4.04969 4.23336 4.26073 4.37873 4.40786 4.44920 4.48935 4.63517 4.64252 4.67543 4.71366 4.75253 4.82242 4.87135 4.91588 4.92180 5.01599 5.06930 5.15957 5.17463 5.26761 5.34909 5.35738 5.43165 5.45287 5.62074 5.67848 5.74080 5.88161 6.06731 6.18163 6.59760 6.83430 7.30528 7.57391 8.60210 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015290 B = 0.002147 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.825477 B =13037.368337 C =14201.717741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.134 4.134 4 C 0.044 3.956 5 O -0.392 6.392 6 C 0.089 3.911 7 H 0.058 0.942 8 C -0.135 4.135 9 C 0.509 3.491 10 O -0.578 6.578 11 N -0.718 5.718 12 C 0.174 3.826 13 C -0.059 4.059 14 C -0.158 4.158 15 C -0.073 4.073 16 C -0.228 4.228 17 C 0.119 3.881 18 O -0.245 6.245 19 C -0.398 4.398 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.921 5.921 23 Si 0.968 3.032 24 H -0.268 1.268 25 H -0.267 1.267 26 H -0.264 1.264 27 C -0.172 4.172 28 C -0.138 4.138 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.140 0.860 38 H 0.111 0.889 39 H 0.413 0.587 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.111 0.889 45 H 0.285 0.715 46 H 0.119 0.881 47 H 0.097 0.903 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.722 27.741 0.776 30.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.097 4.097 3 C -0.191 4.191 4 C -0.032 4.032 5 O -0.311 6.311 6 C 0.031 3.969 7 H 0.076 0.924 8 C -0.175 4.175 9 C 0.297 3.703 10 O -0.458 6.458 11 N -0.371 5.371 12 C 0.050 3.950 13 C -0.060 4.060 14 C -0.177 4.177 15 C -0.090 4.090 16 C -0.247 4.247 17 C 0.070 3.930 18 O -0.153 6.153 19 C -0.474 4.474 20 H 0.102 0.898 21 C -0.188 4.188 22 N -0.561 5.561 23 Si 0.790 3.210 24 H -0.194 1.194 25 H -0.192 1.192 26 H -0.188 1.188 27 C -0.191 4.191 28 C -0.175 4.175 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.158 0.842 38 H 0.130 0.870 39 H 0.249 0.751 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.168 0.832 43 H 0.163 0.837 44 H 0.129 0.871 45 H 0.094 0.906 46 H 0.137 0.863 47 H 0.116 0.884 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.959 27.403 -0.146 30.754 hybrid contribution -0.947 -0.657 -0.135 1.160 sum 13.013 26.746 -0.281 29.745 Atomic orbital electron populations 1.21772 0.93098 1.01702 1.02675 1.22156 0.96771 0.96419 0.94320 1.21732 1.00928 0.93507 1.02907 1.23852 1.00503 0.81037 0.97813 1.88992 1.88926 1.27269 1.25947 1.22515 0.97692 0.94986 0.81723 0.92404 1.22028 1.03275 0.89207 1.02980 1.21209 0.80606 0.87253 0.81206 1.90705 1.34683 1.87788 1.32585 1.46063 1.43825 1.04934 1.42247 1.19986 0.98128 0.79827 0.97026 1.19467 0.93300 0.97384 0.95849 1.21032 1.01588 0.99430 0.95678 1.21152 0.92514 0.95745 0.99639 1.21403 0.99878 1.05151 0.98274 1.19575 0.85550 0.94500 0.93366 1.83522 1.30350 1.47891 1.53543 1.20704 1.08497 1.09661 1.08547 0.89814 1.25245 0.96150 0.95374 1.02012 1.69724 1.20699 1.24272 1.41453 0.85259 0.77734 0.79561 0.78425 1.19359 1.19157 1.18798 1.20262 0.96332 1.00697 1.01856 1.23148 1.03076 0.92881 0.98412 0.91094 0.92152 0.93422 0.92152 0.91935 0.91167 0.92169 0.89175 0.84218 0.87040 0.75088 0.92112 0.89819 0.83236 0.83672 0.87106 0.90582 0.86252 0.88426 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.54 71.98 0.61 -0.90 16 2 C -0.10 -1.09 1.00 -50.80 -0.05 -1.15 16 3 C -0.13 -1.04 8.56 71.98 0.62 -0.43 16 4 C 0.04 0.74 6.64 72.74 0.48 1.22 16 5 O -0.39 -9.45 10.57 -138.16 -1.46 -10.91 16 6 C 0.09 1.58 2.93 30.97 0.09 1.67 16 7 H 0.06 1.19 7.93 -2.39 -0.02 1.17 16 8 C -0.14 -2.10 5.19 29.85 0.15 -1.94 16 9 C 0.51 12.27 7.73 87.66 0.68 12.95 16 10 O -0.58 -19.28 15.51 7.79 0.12 -19.16 16 11 N -0.72 -15.83 5.55 -466.81 -2.59 -18.42 16 12 C 0.17 4.47 5.80 85.63 0.50 4.96 16 13 C -0.06 -1.74 5.25 -19.88 -0.10 -1.84 16 14 C -0.16 -4.26 9.70 22.30 0.22 -4.04 16 15 C -0.07 -2.26 10.04 22.25 0.22 -2.04 16 16 C -0.23 -9.43 9.17 22.39 0.21 -9.23 16 17 C 0.12 5.38 6.65 22.58 0.15 5.53 16 18 O -0.25 -13.11 8.59 -22.68 -0.19 -13.31 16 19 C -0.40 -23.05 9.95 67.92 0.68 -22.37 16 20 H 0.08 5.04 5.44 -2.91 -0.02 5.03 16 21 C 0.01 0.62 5.49 84.83 0.47 1.09 16 22 N -0.92 -54.44 13.96 21.61 0.30 -54.14 16 23 Si 0.97 45.34 28.62 68.60 1.96 47.31 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 27 C -0.17 -6.38 9.65 22.39 0.22 -6.17 16 28 C -0.14 -1.46 5.80 31.59 0.18 -1.28 16 29 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.45 8.09 -2.39 -0.02 0.43 16 33 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.06 0.94 8.01 -2.38 -0.02 0.92 16 36 H 0.09 1.42 8.06 -2.39 -0.02 1.40 16 37 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.41 7.40 8.46 -92.71 -0.78 6.62 16 40 H 0.06 1.75 8.08 -2.39 -0.02 1.73 16 41 H 0.08 2.02 8.08 -2.38 -0.02 2.00 16 42 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 43 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 44 H 0.11 5.08 5.64 -2.91 -0.02 5.06 16 45 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 46 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 47 H 0.10 0.73 7.42 -2.39 -0.02 0.71 16 48 H 0.09 0.75 7.86 -2.39 -0.02 0.73 16 Total: -1.00 -73.65 394.75 3.63 -70.02 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.18 Total: 22.57 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 5.31 Total: -23.96 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -2.29 Total: -72.55 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -1.53 Total: -43.37 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.96 Total: 47.31 kcal Total: -73.65 3.63 -70.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647398670.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.653 kcal (2) G-P(sol) polarization free energy of solvation -73.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds