Wall clock time and date at job start Tue Mar 31 2020 17:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39899 * 109.47330 * 2 1 4 4 F 1.39903 * 109.47117 * 239.99579 * 2 1 3 5 5 C 1.50700 * 109.46764 * 119.99834 * 2 1 3 6 6 O 1.21280 * 120.00347 * 24.99893 * 5 2 1 7 7 N 1.34774 * 119.99672 * 204.99474 * 5 2 1 8 8 C 1.47421 * 125.65176 * 0.04758 * 7 5 2 9 9 C 1.55122 * 104.94491 * 203.96491 * 8 7 5 10 10 C 1.55161 * 101.48445 * 323.22077 * 9 8 7 11 11 C 1.53003 * 110.72026 * 276.82881 * 10 9 8 12 12 C 1.53004 * 110.71917 * 153.73582 * 10 9 8 13 13 N 1.46895 * 109.47035 * 63.84256 * 12 10 9 14 14 C 1.46906 * 110.99789 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47109 * 179.97438 * 14 13 12 16 16 O 1.21296 * 119.99996 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99978 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99848 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00405 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99710 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00111 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99871 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47117 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46892 * 120.00408 * 22 20 18 25 25 H 1.48498 * 109.47545 * 240.00361 * 22 20 18 26 26 C 1.47033 * 125.64843 * 179.97438 * 7 5 2 27 27 H 1.09004 * 109.47174 * 300.00249 * 1 2 3 28 28 H 1.09007 * 109.46932 * 59.99915 * 1 2 3 29 29 H 1.09001 * 109.47562 * 180.02562 * 1 2 3 30 30 H 1.08999 * 110.36720 * 322.92975 * 8 7 5 31 31 H 1.09003 * 110.36861 * 85.25097 * 8 7 5 32 32 H 1.09005 * 111.16200 * 205.12921 * 9 8 7 33 33 H 1.08994 * 110.93837 * 81.21268 * 9 8 7 34 34 H 1.08998 * 109.47049 * 296.15972 * 11 10 9 35 35 H 1.09003 * 109.46958 * 56.15756 * 11 10 9 36 36 H 1.08998 * 109.46865 * 176.15679 * 11 10 9 37 37 H 1.08996 * 109.46863 * 303.84098 * 12 10 9 38 38 H 1.09002 * 109.46661 * 183.84275 * 12 10 9 39 39 H 1.00899 * 111.00672 * 56.04786 * 13 12 10 40 40 H 1.08992 * 109.47459 * 299.99826 * 14 13 12 41 41 H 1.09004 * 109.47040 * 59.99976 * 14 13 12 42 42 H 0.97002 * 119.99767 * 359.97438 * 17 15 14 43 43 H 0.96996 * 120.00275 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.87647 * 59.56422 * 26 7 5 45 45 H 1.08997 * 109.87814 * 298.39723 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0322 -0.7104 1.2305 6 8 1.3369 -1.5393 1.7785 7 7 3.2542 -0.4246 1.7219 8 6 4.1989 0.5569 1.1585 9 6 5.5965 0.0920 1.6452 10 6 5.2711 -0.4235 3.0720 11 6 5.2424 0.7339 4.0723 12 6 6.2813 -1.4872 3.5068 13 7 7.6182 -0.8850 3.5966 14 6 8.6164 -1.8792 4.0131 15 6 9.9723 -1.2264 4.0934 16 8 10.0950 -0.0487 3.8300 17 7 11.0486 -1.9511 4.4578 18 6 12.2820 -1.3571 4.5312 19 1 12.3913 -0.3086 4.2968 20 6 13.3916 -2.1042 4.9075 21 7 13.2588 -3.3802 5.1923 22 14 15.0723 -1.2951 5.0069 23 1 14.9539 0.1388 4.6392 24 1 15.5952 -1.4089 6.3922 25 1 16.0038 -1.9717 4.0691 26 6 3.8653 -1.0391 2.9097 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.1524 0.5464 0.0696 31 1 3.9807 1.5550 1.5387 32 1 6.2980 0.9255 1.6814 33 1 5.9799 -0.7122 1.0173 34 1 6.2342 1.1811 4.1390 35 1 4.5268 1.4852 3.7382 36 1 4.9457 0.3600 5.0522 37 1 6.2952 -2.2954 2.7757 38 1 5.9950 -1.8834 4.4811 39 1 7.6164 -0.0918 4.2201 40 1 8.3462 -2.2777 4.9909 41 1 8.6466 -2.6905 3.2858 42 1 10.9504 -2.8928 4.6687 43 1 14.0333 -3.9018 5.4546 44 1 3.9468 -2.1169 2.7689 45 1 3.2616 -0.8228 3.7910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649457379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:17 Heat of formation + Delta-G solvation = -166.205523 kcal Electronic energy + Delta-G solvation = -28932.060421 eV Core-core repulsion = 24427.314518 eV Total energy + Delta-G solvation = -4504.745903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.64769 -47.62465 -40.62482 -38.84010 -38.13549 -35.62826 -33.93847 -32.78093 -31.97471 -31.21978 -29.94916 -27.72338 -27.53707 -25.56035 -24.41261 -23.10913 -23.02041 -20.48703 -19.60391 -19.17050 -18.28812 -18.13218 -17.87307 -17.21391 -16.45222 -16.19615 -15.83320 -15.58978 -14.97877 -14.85484 -14.50688 -14.44955 -14.14307 -13.99246 -13.92774 -13.87990 -13.60604 -13.51193 -13.07457 -13.05426 -12.91157 -12.80198 -12.64662 -12.40254 -12.20934 -12.15254 -11.68891 -11.55653 -11.54812 -11.08782 -11.06640 -10.79388 -10.75253 -10.38578 -10.35795 -10.24122 -9.53754 -9.16253 -8.48913 -8.09751 -7.97894 -6.43554 -3.84414 1.71786 2.09285 3.15030 3.19350 3.25785 3.32844 3.42665 3.84176 3.88869 3.97758 4.07329 4.19306 4.27871 4.44585 4.64708 4.88187 4.91296 4.92011 5.05024 5.06480 5.11071 5.23751 5.27338 5.32879 5.36862 5.40756 5.53065 5.58506 5.65555 5.74678 5.81647 5.86841 5.90714 5.95328 6.06073 6.16316 6.24020 6.84013 7.14807 7.31793 7.53702 7.61093 8.04647 8.59142 9.16102 9.52499 10.03563 10.74216 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.032410 B = 0.001909 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.732960 B =14663.850349 C =14813.921987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.285 3.715 3 F -0.187 7.187 4 F -0.181 7.181 5 C 0.497 3.503 6 O -0.508 6.508 7 N -0.597 5.597 8 C 0.089 3.911 9 C -0.109 4.109 10 C -0.070 4.070 11 C -0.144 4.144 12 C 0.074 3.926 13 N -0.665 5.665 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.116 3.884 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.350 0.650 40 H 0.043 0.957 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.076 0.924 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.466 4.977 -7.153 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.246 3.754 3 F -0.168 7.168 4 F -0.162 7.162 5 C 0.281 3.719 6 O -0.383 6.383 7 N -0.329 5.329 8 C -0.033 4.033 9 C -0.147 4.147 10 C -0.071 4.071 11 C -0.201 4.201 12 C -0.056 4.056 13 N -0.299 5.299 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.007 4.007 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.170 0.830 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.507 5.115 -7.688 26.189 hybrid contribution 0.771 -0.385 0.978 1.304 sum -23.735 4.730 -6.710 25.115 Atomic orbital electron populations 1.22637 0.88701 1.06830 1.05748 1.21289 0.95733 0.75667 0.82743 1.93069 1.90353 1.36733 1.96626 1.93098 1.90526 1.80775 1.51823 1.20399 0.81485 0.84163 0.85901 1.90784 1.55453 1.32836 1.59270 1.48505 1.14880 1.40496 1.29067 1.22794 0.88990 0.92215 0.99278 1.22841 0.94542 1.02753 0.94540 1.21598 0.92499 0.96283 0.96670 1.21888 1.03079 0.97190 0.97941 1.21909 0.88397 0.95542 0.99765 1.60092 1.02937 1.09465 1.57358 1.21673 0.92133 0.95134 0.99311 1.19797 0.85422 0.87830 0.84318 1.90519 1.85655 1.16207 1.54409 1.41876 1.06714 1.11987 1.59467 1.19753 0.83329 0.96784 1.42976 0.87846 1.25274 1.00103 0.95482 0.97165 1.69617 1.31685 1.06529 1.46446 0.85796 0.81355 0.79406 0.77758 1.19209 1.20786 1.20741 1.22155 0.93196 0.98113 0.87202 0.88806 0.89003 0.88024 0.90145 0.90202 0.88337 0.89951 0.90811 0.92327 0.92377 0.90685 0.95033 0.82972 0.93868 0.89597 0.77462 0.91912 0.90550 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 8.92 37.16 0.33 -0.82 16 2 C 0.29 2.55 2.04 -27.89 -0.06 2.50 16 3 F -0.19 -1.65 14.53 2.25 0.03 -1.61 16 4 F -0.18 -1.82 17.05 2.25 0.04 -1.79 16 5 C 0.50 5.44 7.29 -10.99 -0.08 5.36 16 6 O -0.51 -6.75 16.42 5.56 0.09 -6.66 16 7 N -0.60 -6.00 3.33 -170.39 -0.57 -6.57 16 8 C 0.09 0.78 5.15 -2.42 -0.01 0.77 16 9 C -0.11 -1.04 5.81 -24.46 -0.14 -1.18 16 10 C -0.07 -0.66 0.70 -152.67 -0.11 -0.76 16 11 C -0.14 -1.28 8.08 37.16 0.30 -0.98 16 12 C 0.07 0.81 4.56 -3.82 -0.02 0.80 16 13 N -0.66 -9.74 5.85 -115.06 -0.67 -10.41 16 14 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 15 C 0.44 10.12 7.82 -10.98 -0.09 10.04 16 16 O -0.58 -15.39 15.78 5.54 0.09 -15.30 16 17 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 18 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 22 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 C 0.12 1.11 6.05 -3.06 -0.02 1.09 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.10 0.66 7.87 -51.93 -0.41 0.25 16 30 H 0.08 0.69 7.18 -51.93 -0.37 0.32 16 31 H 0.08 0.63 7.67 -51.93 -0.40 0.23 16 32 H 0.10 0.99 8.04 -51.93 -0.42 0.57 16 33 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 34 H 0.07 0.74 6.64 -51.93 -0.34 0.39 16 35 H 0.06 0.48 7.49 -51.93 -0.39 0.09 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.35 5.29 6.54 -39.29 -0.26 5.03 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.08 0.76 7.82 -51.93 -0.41 0.35 16 45 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -31.88 375.41 -6.46 -38.34 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.61 Total: 10.56 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -0.16 Total: 9.70 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.57 Total: -54.75 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.18 Total: -21.96 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.07 Total: -3.40 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.88 -6.46 -38.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649457379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.866 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds