Wall clock time and date at job start Tue Mar 31 2020 17:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39899 * 109.47330 * 2 1 4 4 F 1.39903 * 109.47117 * 239.99579 * 2 1 3 5 5 C 1.50700 * 109.46764 * 119.99834 * 2 1 3 6 6 O 1.21280 * 120.00347 * 24.99893 * 5 2 1 7 7 N 1.34774 * 119.99672 * 204.99474 * 5 2 1 8 8 C 1.47421 * 125.65176 * 0.04758 * 7 5 2 9 9 C 1.55122 * 104.94491 * 203.96491 * 8 7 5 10 10 C 1.55161 * 101.48445 * 323.22077 * 9 8 7 11 11 C 1.53003 * 110.72026 * 276.82881 * 10 9 8 12 12 C 1.53004 * 110.71917 * 153.73582 * 10 9 8 13 13 N 1.46895 * 109.47035 * 63.84256 * 12 10 9 14 14 C 1.46906 * 110.99789 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47109 * 179.97438 * 14 13 12 16 16 O 1.21296 * 119.99996 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99978 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99848 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00405 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99710 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00111 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99871 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47117 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46892 * 120.00408 * 22 20 18 25 25 H 1.48498 * 109.47545 * 240.00361 * 22 20 18 26 26 C 1.47033 * 125.64843 * 179.97438 * 7 5 2 27 27 H 1.09004 * 109.47174 * 300.00249 * 1 2 3 28 28 H 1.09007 * 109.46932 * 59.99915 * 1 2 3 29 29 H 1.09001 * 109.47562 * 180.02562 * 1 2 3 30 30 H 1.08999 * 110.36720 * 322.92975 * 8 7 5 31 31 H 1.09003 * 110.36861 * 85.25097 * 8 7 5 32 32 H 1.09005 * 111.16200 * 205.12921 * 9 8 7 33 33 H 1.08994 * 110.93837 * 81.21268 * 9 8 7 34 34 H 1.08998 * 109.47049 * 296.15972 * 11 10 9 35 35 H 1.09003 * 109.46958 * 56.15756 * 11 10 9 36 36 H 1.08998 * 109.46865 * 176.15679 * 11 10 9 37 37 H 1.08996 * 109.46863 * 303.84098 * 12 10 9 38 38 H 1.09002 * 109.46661 * 183.84275 * 12 10 9 39 39 H 1.00899 * 111.00672 * 56.04786 * 13 12 10 40 40 H 1.08992 * 109.47459 * 299.99826 * 14 13 12 41 41 H 1.09004 * 109.47040 * 59.99976 * 14 13 12 42 42 H 0.97002 * 119.99767 * 359.97438 * 17 15 14 43 43 H 0.96996 * 120.00275 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.87647 * 59.56422 * 26 7 5 45 45 H 1.08997 * 109.87814 * 298.39723 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0322 -0.7104 1.2305 6 8 1.3369 -1.5393 1.7785 7 7 3.2542 -0.4246 1.7219 8 6 4.1989 0.5569 1.1585 9 6 5.5965 0.0920 1.6452 10 6 5.2711 -0.4235 3.0720 11 6 5.2424 0.7339 4.0723 12 6 6.2813 -1.4872 3.5068 13 7 7.6182 -0.8850 3.5966 14 6 8.6164 -1.8792 4.0131 15 6 9.9723 -1.2264 4.0934 16 8 10.0950 -0.0487 3.8300 17 7 11.0486 -1.9511 4.4578 18 6 12.2820 -1.3571 4.5312 19 1 12.3913 -0.3086 4.2968 20 6 13.3916 -2.1042 4.9075 21 7 13.2588 -3.3802 5.1923 22 14 15.0723 -1.2951 5.0069 23 1 14.9539 0.1388 4.6392 24 1 15.5952 -1.4089 6.3922 25 1 16.0038 -1.9717 4.0691 26 6 3.8653 -1.0391 2.9097 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.1524 0.5464 0.0696 31 1 3.9807 1.5550 1.5387 32 1 6.2980 0.9255 1.6814 33 1 5.9799 -0.7122 1.0173 34 1 6.2342 1.1811 4.1390 35 1 4.5268 1.4852 3.7382 36 1 4.9457 0.3600 5.0522 37 1 6.2952 -2.2954 2.7757 38 1 5.9950 -1.8834 4.4811 39 1 7.6164 -0.0918 4.2201 40 1 8.3462 -2.2777 4.9909 41 1 8.6466 -2.6905 3.2858 42 1 10.9504 -2.8928 4.6687 43 1 14.0333 -3.9018 5.4546 44 1 3.9468 -2.1169 2.7689 45 1 3.2616 -0.8228 3.7910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649457379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:16 Heat of formation + Delta-G solvation = -188.710819 kcal Electronic energy + Delta-G solvation = -28933.036324 eV Core-core repulsion = 24427.314518 eV Total energy + Delta-G solvation = -4505.721806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.36355 -48.34476 -41.45024 -40.17744 -39.48855 -36.77906 -35.85136 -33.83521 -33.20761 -32.57900 -30.74868 -28.94959 -28.36875 -26.89053 -25.68648 -24.15268 -23.86239 -21.26513 -21.11009 -20.26779 -19.88111 -19.04255 -18.88595 -17.97892 -17.75633 -17.08559 -16.98514 -16.79982 -16.44924 -16.06842 -15.68881 -15.48696 -15.35896 -15.04834 -15.01165 -14.76465 -14.64104 -14.34878 -14.21381 -14.02607 -13.61046 -13.55950 -13.48294 -13.41013 -13.34927 -13.13361 -13.02656 -12.91226 -12.82647 -12.48733 -12.39650 -12.11138 -11.90173 -11.61821 -11.56017 -11.49725 -11.21069 -10.32136 -10.00351 -9.97098 -9.28980 -8.46128 -5.94578 0.88776 1.33612 1.37170 1.42588 1.56618 2.06912 2.29521 2.45629 2.77934 2.87549 3.21448 3.22268 3.41824 3.43931 3.50058 3.68935 3.76311 4.11528 4.15632 4.27663 4.35319 4.47126 4.49984 4.52681 4.53734 4.57292 4.57563 4.64040 4.75554 4.80714 4.87987 4.92935 5.00322 5.09266 5.13819 5.26353 5.40156 5.42099 5.88545 6.04028 6.10720 6.44152 6.49635 6.60991 7.13708 7.57875 8.12787 8.71481 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.032410 B = 0.001909 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.732960 B =14663.850349 C =14813.921987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.286 3.714 3 F -0.185 7.185 4 F -0.189 7.189 5 C 0.492 3.508 6 O -0.536 6.536 7 N -0.598 5.598 8 C 0.094 3.906 9 C -0.107 4.107 10 C -0.061 4.061 11 C -0.140 4.140 12 C 0.076 3.924 13 N -0.675 5.675 14 C 0.064 3.936 15 C 0.439 3.561 16 O -0.621 6.621 17 N -0.575 5.575 18 C -0.331 4.331 19 H 0.080 0.920 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.272 1.272 26 C 0.117 3.883 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.346 0.654 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.073 0.927 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.317 5.077 -7.171 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.247 3.753 3 F -0.166 7.166 4 F -0.170 7.170 5 C 0.276 3.724 6 O -0.414 6.414 7 N -0.330 5.330 8 C -0.028 4.028 9 C -0.145 4.145 10 C -0.062 4.062 11 C -0.197 4.197 12 C -0.053 4.053 13 N -0.308 5.308 14 C -0.068 4.068 15 C 0.226 3.774 16 O -0.507 6.507 17 N -0.212 5.212 18 C -0.461 4.461 19 H 0.098 0.902 20 C -0.215 4.215 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.005 4.005 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.167 0.833 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.230 0.770 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.368 5.202 -7.710 27.019 hybrid contribution 1.001 -0.400 0.968 1.449 sum -24.367 4.801 -6.741 25.734 Atomic orbital electron populations 1.22693 0.86542 1.07158 1.07216 1.21396 0.97087 0.75313 0.81545 1.93070 1.90512 1.36506 1.96549 1.93084 1.90789 1.81012 1.52109 1.20783 0.81397 0.83925 0.86321 1.90765 1.56234 1.34098 1.60294 1.48620 1.14844 1.40449 1.29068 1.22820 0.88106 0.92409 0.99454 1.22784 0.94890 1.02267 0.94593 1.21499 0.92016 0.96044 0.96659 1.21849 1.02607 0.97065 0.98181 1.21953 0.86767 0.95915 1.00649 1.60073 1.04273 1.09178 1.57305 1.21525 0.88897 0.95234 1.01163 1.20883 0.87083 0.87395 0.81992 1.90489 1.86680 1.18100 1.55467 1.41954 1.06709 1.12247 1.60326 1.19703 0.85203 0.96221 1.44977 0.90234 1.26046 1.03124 0.96026 0.96260 1.69676 1.32877 1.07289 1.46385 0.84868 0.77079 0.78137 0.78241 1.19713 1.19663 1.19748 1.22138 0.93106 0.97932 0.87366 0.87964 0.86945 0.88261 0.89896 0.88962 0.88858 0.90870 0.92041 0.91416 0.91616 0.90393 0.93659 0.83332 0.91615 0.87971 0.77019 0.91362 0.90853 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 8.92 71.98 0.64 -1.32 16 2 C 0.29 4.74 2.04 29.85 0.06 4.80 16 3 F -0.19 -2.96 14.53 44.97 0.65 -2.31 16 4 F -0.19 -3.60 17.05 44.97 0.77 -2.84 16 5 C 0.49 10.24 7.29 87.66 0.64 10.88 16 6 O -0.54 -13.88 16.42 -3.03 -0.05 -13.93 16 7 N -0.60 -11.25 3.33 -811.37 -2.70 -13.95 16 8 C 0.09 1.51 5.15 86.93 0.45 1.96 16 9 C -0.11 -1.95 5.81 32.06 0.19 -1.76 16 10 C -0.06 -1.06 0.70 -50.99 -0.04 -1.10 16 11 C -0.14 -2.26 8.08 71.98 0.58 -1.68 16 12 C 0.08 1.55 4.56 86.31 0.39 1.94 16 13 N -0.67 -18.98 5.85 -517.92 -3.03 -22.01 16 14 C 0.06 2.07 6.17 85.56 0.53 2.60 16 15 C 0.44 20.24 7.82 87.66 0.69 20.92 16 16 O -0.62 -33.33 15.78 -3.08 -0.05 -33.38 16 17 N -0.58 -29.03 5.29 -306.98 -1.62 -30.65 16 18 C -0.33 -18.63 9.68 84.04 0.81 -17.82 16 19 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 20 C -0.02 -0.80 5.50 84.93 0.47 -0.33 16 21 N -0.92 -49.45 13.05 21.66 0.28 -49.16 16 22 Si 0.99 42.66 29.55 68.60 2.03 44.68 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 C 0.12 2.06 6.05 86.72 0.52 2.59 16 27 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.10 1.16 7.87 -2.39 -0.02 1.14 16 30 H 0.08 1.32 7.18 -2.39 -0.02 1.30 16 31 H 0.09 1.29 7.67 -2.39 -0.02 1.27 16 32 H 0.09 1.82 8.04 -2.38 -0.02 1.80 16 33 H 0.07 1.47 8.05 -2.39 -0.02 1.45 16 34 H 0.06 1.17 6.64 -2.39 -0.02 1.16 16 35 H 0.07 0.97 7.49 -2.39 -0.02 0.96 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 39 H 0.35 10.21 6.54 -89.69 -0.59 9.62 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 42 H 0.40 19.02 7.90 -92.71 -0.73 18.28 16 43 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 44 H 0.07 1.36 7.82 -2.39 -0.02 1.34 16 45 H 0.08 1.37 7.84 -2.39 -0.02 1.35 16 Total: -1.00 -68.52 375.41 1.92 -66.59 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -0.29 Total: 35.27 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 5.93 Total: 21.68 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -7.07 Total: -115.78 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -0.10 Total: -47.30 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 1.42 Total: -5.14 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -68.52 1.92 -66.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649457379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.116 kcal (2) G-P(sol) polarization free energy of solvation -68.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds