Wall clock time and date at job start Tue Mar 31 2020 17:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39894 * 109.47223 * 2 1 4 4 F 1.39900 * 109.46932 * 239.99905 * 2 1 3 5 5 C 1.50698 * 109.47311 * 120.00046 * 2 1 3 6 6 O 1.21288 * 120.00160 * 24.99810 * 5 2 1 7 7 N 1.34781 * 120.00019 * 204.99892 * 5 2 1 8 8 C 1.48427 * 127.98028 * 0.08868 * 7 5 2 9 9 C 1.54395 * 104.65420 * 140.36956 * 8 7 5 10 10 C 1.54289 * 104.95718 * 23.86731 * 9 8 7 11 11 C 1.52994 * 110.34095 * 118.87125 * 10 9 8 12 12 C 1.53005 * 110.43052 * 241.08491 * 10 9 8 13 13 N 1.46897 * 109.46871 * 295.58941 * 12 10 9 14 14 C 1.46901 * 110.99902 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47083 * 180.02562 * 14 13 12 16 16 O 1.21289 * 120.00140 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99815 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99974 * 180.02562 * 17 15 14 19 19 H 1.07997 * 119.99824 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00233 * 179.97438 * 18 17 15 21 21 N 1.31421 * 119.99755 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00316 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47156 * 59.99932 * 22 20 18 24 24 H 1.48498 * 109.47225 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46877 * 299.99911 * 22 20 18 26 26 C 1.48146 * 127.83592 * 179.97438 * 7 5 2 27 27 H 1.08998 * 109.46696 * 299.99731 * 1 2 3 28 28 H 1.08999 * 109.47150 * 60.00231 * 1 2 3 29 29 H 1.09005 * 109.46919 * 180.02562 * 1 2 3 30 30 H 1.09004 * 110.39413 * 21.57624 * 8 7 5 31 31 H 1.09006 * 110.49084 * 259.21655 * 8 7 5 32 32 H 1.08996 * 110.33994 * 264.99933 * 9 8 7 33 33 H 1.08995 * 110.34161 * 142.73488 * 9 8 7 34 34 H 1.08993 * 109.47398 * 304.45896 * 11 10 9 35 35 H 1.09003 * 109.47288 * 64.46376 * 11 10 9 36 36 H 1.09007 * 109.46770 * 184.45825 * 11 10 9 37 37 H 1.08996 * 109.46895 * 55.59180 * 12 10 9 38 38 H 1.08999 * 109.46848 * 175.58962 * 12 10 9 39 39 H 1.00897 * 111.00528 * 303.95493 * 13 12 10 40 40 H 1.08999 * 109.47049 * 300.00088 * 14 13 12 41 41 H 1.08995 * 109.46875 * 60.00108 * 14 13 12 42 42 H 0.96996 * 119.99974 * 0.02562 * 17 15 14 43 43 H 0.96989 * 120.00080 * 180.02562 * 21 20 18 44 44 H 1.09002 * 110.40776 * 100.80198 * 26 7 5 45 45 H 1.09002 * 110.40863 * 338.48606 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7104 1.2304 6 8 1.3371 -1.5394 1.7785 7 7 3.2545 -0.4246 1.7219 8 6 4.2440 0.5505 1.1993 9 6 4.8491 1.2063 2.4593 10 6 4.6330 0.1760 3.5872 11 6 5.9778 -0.2722 4.1629 12 6 3.7541 0.7685 4.6906 13 7 4.4535 1.8959 5.3213 14 6 3.6374 2.4915 6.3878 15 6 4.3857 3.6424 7.0095 16 8 5.4899 3.9377 6.6038 17 7 3.8279 4.3435 8.0164 18 6 4.5084 5.3909 8.5817 19 1 5.4916 5.6538 8.2205 20 6 3.9331 6.1140 9.6194 21 7 2.7368 5.7937 10.0593 22 14 4.8599 7.5415 10.3891 23 1 5.1421 8.5656 9.3515 24 1 4.0354 8.1430 11.4677 25 1 6.1396 7.0502 10.9606 26 6 3.9161 -1.0116 2.9103 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.7491 1.2998 0.5814 31 1 5.0185 0.0390 0.6278 32 1 4.3283 2.1356 2.6900 33 1 5.9133 1.3929 2.3153 34 1 6.6070 -0.6561 3.3599 35 1 6.4711 0.5763 4.6370 36 1 5.8133 -1.0563 4.9021 37 1 2.8161 1.1182 4.2594 38 1 3.5470 0.0044 5.4398 39 1 5.3556 1.6111 5.6722 40 1 2.6988 2.8532 5.9679 41 1 3.4292 1.7395 7.1488 42 1 2.9450 4.1071 8.3411 43 1 2.3351 6.2987 10.7833 44 1 4.6390 -1.7691 2.6075 45 1 3.1752 -1.4422 3.5840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649457380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:21 Heat of formation + Delta-G solvation = -159.761580 kcal Electronic energy + Delta-G solvation = -29289.512799 eV Core-core repulsion = 24785.046327 eV Total energy + Delta-G solvation = -4504.466473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.66704 -47.64684 -40.50988 -38.79665 -38.10456 -35.53406 -33.92091 -32.77298 -31.93083 -31.20702 -29.93867 -27.68625 -27.46412 -25.41725 -24.38623 -23.25917 -22.94530 -20.55708 -19.53182 -19.11585 -18.20982 -18.11882 -17.86943 -17.14211 -16.50625 -16.10406 -15.95129 -15.54453 -15.00632 -14.63996 -14.56419 -14.40788 -14.24572 -13.93022 -13.91377 -13.74376 -13.66515 -13.27996 -13.08841 -12.95895 -12.92366 -12.80265 -12.66370 -12.34515 -12.12153 -12.06168 -11.66481 -11.53866 -11.40825 -11.03179 -11.01289 -10.75220 -10.62850 -10.44959 -10.29726 -10.21879 -9.50629 -9.21352 -8.47094 -8.07232 -7.96574 -6.42183 -3.83200 1.76167 2.10078 3.19531 3.21364 3.25331 3.29571 3.45734 3.87731 3.90449 4.02231 4.10888 4.22210 4.37701 4.50224 4.67666 4.94404 4.97432 4.98986 5.08828 5.12072 5.15857 5.25075 5.27934 5.34856 5.42715 5.45454 5.52094 5.56571 5.68458 5.75640 5.81824 5.87639 5.97045 5.99337 6.18432 6.24372 6.26592 6.92460 7.18259 7.35019 7.54382 7.64738 8.05429 8.60558 9.17063 9.53704 10.04990 10.75529 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.002260 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.435883 B =12386.273770 C =12942.699679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.286 3.714 3 F -0.182 7.182 4 F -0.183 7.183 5 C 0.505 3.495 6 O -0.508 6.508 7 N -0.603 5.603 8 C 0.072 3.928 9 C -0.115 4.115 10 C -0.071 4.071 11 C -0.143 4.143 12 C 0.073 3.927 13 N -0.665 5.665 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.112 3.888 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.349 0.651 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.080 0.920 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 -14.694 -18.807 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.246 3.754 3 F -0.163 7.163 4 F -0.164 7.164 5 C 0.289 3.711 6 O -0.384 6.384 7 N -0.336 5.336 8 C -0.049 4.049 9 C -0.153 4.153 10 C -0.072 4.072 11 C -0.201 4.201 12 C -0.057 4.057 13 N -0.299 5.299 14 C -0.083 4.083 15 C 0.227 3.773 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.010 4.010 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.170 0.830 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.158 -14.401 -19.156 24.063 hybrid contribution 0.024 0.009 1.209 1.209 sum -2.134 -14.392 -17.947 23.104 Atomic orbital electron populations 1.22651 0.88546 1.06822 1.05976 1.21336 0.95850 0.75538 0.82633 1.92961 1.89719 1.36992 1.96602 1.93085 1.90566 1.80787 1.51924 1.20298 0.81067 0.83988 0.85765 1.90790 1.55269 1.33097 1.59209 1.49036 1.14457 1.40794 1.29306 1.23170 0.91287 0.92179 0.98299 1.22568 1.02207 0.98964 0.91554 1.21484 0.95932 0.94301 0.95501 1.21897 0.95224 1.01899 1.01041 1.21980 0.96782 0.91900 0.95033 1.60082 1.06109 1.30739 1.32989 1.21667 0.97298 0.96348 0.92943 1.19790 0.87985 0.86153 0.83392 1.90514 1.21137 1.70784 1.64366 1.41863 1.18686 1.28849 1.30617 1.19651 1.02117 1.06956 1.14222 0.87971 1.25267 0.96124 0.99358 0.97193 1.69606 1.14923 1.41457 1.28362 0.85915 0.79004 0.80734 0.78549 1.19864 1.20981 1.19918 1.22576 0.96404 0.95601 0.86428 0.88583 0.88958 0.88038 0.87879 0.90639 0.88998 0.89757 0.92129 0.90775 0.92489 0.91122 0.95315 0.82979 0.89711 0.93934 0.77464 0.91807 0.90140 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 8.92 37.16 0.33 -0.99 16 2 C 0.29 2.72 2.27 -27.88 -0.06 2.66 16 3 F -0.18 -1.77 13.88 2.25 0.03 -1.74 16 4 F -0.18 -1.83 17.05 2.25 0.04 -1.79 16 5 C 0.51 5.77 7.34 -10.98 -0.08 5.69 16 6 O -0.51 -7.00 16.36 5.55 0.09 -6.91 16 7 N -0.60 -6.21 3.33 -169.08 -0.56 -6.78 16 8 C 0.07 0.64 6.80 -2.25 -0.02 0.62 16 9 C -0.11 -1.12 6.10 -25.33 -0.15 -1.27 16 10 C -0.07 -0.69 0.82 -153.12 -0.13 -0.81 16 11 C -0.14 -1.25 7.91 37.15 0.29 -0.96 16 12 C 0.07 0.87 4.38 -3.82 -0.02 0.86 16 13 N -0.67 -10.18 5.72 -115.06 -0.66 -10.84 16 14 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 15 C 0.44 10.31 7.82 -10.98 -0.09 10.22 16 16 O -0.58 -15.58 15.78 5.55 0.09 -15.49 16 17 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 18 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 21 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 22 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.11 1.06 6.13 -2.42 -0.01 1.04 16 27 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.72 7.87 -51.93 -0.41 0.31 16 30 H 0.10 0.92 5.14 -51.93 -0.27 0.65 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.10 7.59 -51.93 -0.39 0.70 16 33 H 0.08 0.75 7.71 -51.93 -0.40 0.35 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.76 6.51 -51.93 -0.34 0.42 16 36 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.35 5.47 6.43 -39.29 -0.25 5.21 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 44 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 45 H 0.09 0.89 7.60 -51.93 -0.39 0.49 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -32.10 374.51 -6.39 -38.49 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -6.50 Total: 11.68 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -0.20 Total: 9.91 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.55 Total: -55.77 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.18 Total: -22.40 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.07 Total: -3.53 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.10 -6.39 -38.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649457380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.275 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds