Wall clock time and date at job start Tue Mar 31 2020 17:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39894 * 109.47223 * 2 1 4 4 F 1.39900 * 109.46932 * 239.99905 * 2 1 3 5 5 C 1.50698 * 109.47311 * 120.00046 * 2 1 3 6 6 O 1.21288 * 120.00160 * 24.99810 * 5 2 1 7 7 N 1.34781 * 120.00019 * 204.99892 * 5 2 1 8 8 C 1.48427 * 127.98028 * 0.08868 * 7 5 2 9 9 C 1.54395 * 104.65420 * 140.36956 * 8 7 5 10 10 C 1.54289 * 104.95718 * 23.86731 * 9 8 7 11 11 C 1.52994 * 110.34095 * 118.87125 * 10 9 8 12 12 C 1.53005 * 110.43052 * 241.08491 * 10 9 8 13 13 N 1.46897 * 109.46871 * 295.58941 * 12 10 9 14 14 C 1.46901 * 110.99902 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47083 * 180.02562 * 14 13 12 16 16 O 1.21289 * 120.00140 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99815 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99974 * 180.02562 * 17 15 14 19 19 H 1.07997 * 119.99824 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00233 * 179.97438 * 18 17 15 21 21 N 1.31421 * 119.99755 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00316 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47156 * 59.99932 * 22 20 18 24 24 H 1.48498 * 109.47225 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46877 * 299.99911 * 22 20 18 26 26 C 1.48146 * 127.83592 * 179.97438 * 7 5 2 27 27 H 1.08998 * 109.46696 * 299.99731 * 1 2 3 28 28 H 1.08999 * 109.47150 * 60.00231 * 1 2 3 29 29 H 1.09005 * 109.46919 * 180.02562 * 1 2 3 30 30 H 1.09004 * 110.39413 * 21.57624 * 8 7 5 31 31 H 1.09006 * 110.49084 * 259.21655 * 8 7 5 32 32 H 1.08996 * 110.33994 * 264.99933 * 9 8 7 33 33 H 1.08995 * 110.34161 * 142.73488 * 9 8 7 34 34 H 1.08993 * 109.47398 * 304.45896 * 11 10 9 35 35 H 1.09003 * 109.47288 * 64.46376 * 11 10 9 36 36 H 1.09007 * 109.46770 * 184.45825 * 11 10 9 37 37 H 1.08996 * 109.46895 * 55.59180 * 12 10 9 38 38 H 1.08999 * 109.46848 * 175.58962 * 12 10 9 39 39 H 1.00897 * 111.00528 * 303.95493 * 13 12 10 40 40 H 1.08999 * 109.47049 * 300.00088 * 14 13 12 41 41 H 1.08995 * 109.46875 * 60.00108 * 14 13 12 42 42 H 0.96996 * 119.99974 * 0.02562 * 17 15 14 43 43 H 0.96989 * 120.00080 * 180.02562 * 21 20 18 44 44 H 1.09002 * 110.40776 * 100.80198 * 26 7 5 45 45 H 1.09002 * 110.40863 * 338.48606 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7104 1.2304 6 8 1.3371 -1.5394 1.7785 7 7 3.2545 -0.4246 1.7219 8 6 4.2440 0.5505 1.1993 9 6 4.8491 1.2063 2.4593 10 6 4.6330 0.1760 3.5872 11 6 5.9778 -0.2722 4.1629 12 6 3.7541 0.7685 4.6906 13 7 4.4535 1.8959 5.3213 14 6 3.6374 2.4915 6.3878 15 6 4.3857 3.6424 7.0095 16 8 5.4899 3.9377 6.6038 17 7 3.8279 4.3435 8.0164 18 6 4.5084 5.3909 8.5817 19 1 5.4916 5.6538 8.2205 20 6 3.9331 6.1140 9.6194 21 7 2.7368 5.7937 10.0593 22 14 4.8599 7.5415 10.3891 23 1 5.1421 8.5656 9.3515 24 1 4.0354 8.1430 11.4677 25 1 6.1396 7.0502 10.9606 26 6 3.9161 -1.0116 2.9103 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.7491 1.2998 0.5814 31 1 5.0185 0.0390 0.6278 32 1 4.3283 2.1356 2.6900 33 1 5.9133 1.3929 2.3153 34 1 6.6070 -0.6561 3.3599 35 1 6.4711 0.5763 4.6370 36 1 5.8133 -1.0563 4.9021 37 1 2.8161 1.1182 4.2594 38 1 3.5470 0.0044 5.4398 39 1 5.3556 1.6111 5.6722 40 1 2.6988 2.8532 5.9679 41 1 3.4292 1.7395 7.1488 42 1 2.9450 4.1071 8.3411 43 1 2.3351 6.2987 10.7833 44 1 4.6390 -1.7691 2.6075 45 1 3.1752 -1.4422 3.5840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649457380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:20 Heat of formation + Delta-G solvation = -182.421734 kcal Electronic energy + Delta-G solvation = -29290.495417 eV Core-core repulsion = 24785.046327 eV Total energy + Delta-G solvation = -4505.449091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.42492 -48.40662 -41.35512 -40.19216 -39.46590 -36.73344 -35.85432 -33.84649 -33.22256 -32.59658 -30.73084 -28.99986 -28.27353 -26.84989 -25.60829 -24.26778 -23.89503 -21.35934 -21.13714 -20.19826 -19.88398 -18.98188 -18.91448 -17.95845 -17.79660 -17.13561 -16.97526 -16.86160 -16.46564 -16.12194 -15.59514 -15.47679 -15.33909 -15.18511 -15.04964 -14.69386 -14.65922 -14.39517 -14.02981 -13.96054 -13.72911 -13.56334 -13.48381 -13.44488 -13.32738 -13.14179 -13.01131 -12.86213 -12.79889 -12.43504 -12.33013 -12.12812 -11.84553 -11.60179 -11.50053 -11.45173 -11.12982 -10.34720 -10.02546 -10.01897 -9.33546 -8.46743 -5.95756 0.90633 1.32932 1.39938 1.41823 1.52868 2.04713 2.28809 2.44808 2.75661 2.86203 3.20379 3.21268 3.39777 3.45701 3.60277 3.69786 3.76784 4.15633 4.23719 4.32201 4.34552 4.42247 4.46473 4.51464 4.52819 4.56184 4.62067 4.62829 4.75611 4.79615 4.83621 4.91553 5.00427 5.10623 5.23628 5.39204 5.40640 5.45334 5.86147 6.07410 6.11742 6.41995 6.50764 6.59375 7.11956 7.55666 8.10397 8.70558 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.002260 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.435883 B =12386.273770 C =12942.699679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.287 3.713 3 F -0.184 7.184 4 F -0.185 7.185 5 C 0.498 3.502 6 O -0.538 6.538 7 N -0.606 5.606 8 C 0.076 3.924 9 C -0.112 4.112 10 C -0.065 4.065 11 C -0.139 4.139 12 C 0.076 3.924 13 N -0.673 5.673 14 C 0.063 3.937 15 C 0.440 3.560 16 O -0.620 6.620 17 N -0.574 5.574 18 C -0.334 4.334 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.922 5.922 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.113 3.887 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.038 0.962 39 H 0.348 0.652 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.102 0.898 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.979 -15.269 -19.417 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.248 3.752 3 F -0.165 7.165 4 F -0.166 7.166 5 C 0.282 3.718 6 O -0.416 6.416 7 N -0.337 5.337 8 C -0.045 4.045 9 C -0.150 4.150 10 C -0.066 4.066 11 C -0.196 4.196 12 C -0.053 4.053 13 N -0.307 5.307 14 C -0.069 4.069 15 C 0.227 3.773 16 O -0.506 6.506 17 N -0.211 5.211 18 C -0.463 4.463 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.563 5.563 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.009 4.009 27 H 0.115 0.885 28 H 0.131 0.869 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.168 0.832 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.120 0.880 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.006 -14.985 -19.776 24.894 hybrid contribution -0.001 0.161 1.362 1.372 sum -2.007 -14.825 -18.414 23.725 Atomic orbital electron populations 1.22702 0.86798 1.07232 1.07071 1.21400 0.96969 0.75116 0.81742 1.92959 1.89895 1.37061 1.96563 1.93079 1.90734 1.80872 1.51935 1.20652 0.81076 0.83807 0.86219 1.90769 1.56065 1.34470 1.60298 1.49188 1.14395 1.40733 1.29420 1.23236 0.91354 0.92068 0.97864 1.22509 1.02539 0.97918 0.92075 1.21420 0.96121 0.94341 0.94707 1.21863 0.94541 1.01453 1.01767 1.22006 0.96610 0.91001 0.95676 1.60068 1.06073 1.32414 1.32149 1.21517 0.96919 0.94600 0.93870 1.20793 0.87644 0.86605 0.82219 1.90482 1.22961 1.71998 1.65170 1.41944 1.18839 1.28967 1.31383 1.19643 1.02041 1.08869 1.15771 0.90162 1.26061 0.96911 1.01372 0.97011 1.69671 1.15739 1.42282 1.28589 0.84983 0.77963 0.77540 0.77834 1.19671 1.19580 1.19565 1.22629 0.96477 0.95644 0.86106 0.88466 0.86902 0.87975 0.88044 0.88403 0.91475 0.88758 0.90166 0.92422 0.91737 0.92007 0.94389 0.83167 0.88433 0.91848 0.77074 0.91303 0.88017 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.92 71.98 0.64 -1.76 16 2 C 0.29 5.16 2.27 29.85 0.07 5.23 16 3 F -0.18 -3.39 13.88 44.97 0.62 -2.77 16 4 F -0.19 -3.47 17.05 44.97 0.77 -2.70 16 5 C 0.50 10.94 7.34 87.66 0.64 11.58 16 6 O -0.54 -14.58 16.36 -3.06 -0.05 -14.63 16 7 N -0.61 -11.62 3.33 -807.24 -2.69 -14.31 16 8 C 0.08 1.20 6.80 86.48 0.59 1.79 16 9 C -0.11 -2.04 6.10 31.51 0.19 -1.85 16 10 C -0.06 -1.15 0.82 -51.28 -0.04 -1.20 16 11 C -0.14 -2.14 7.91 71.98 0.57 -1.58 16 12 C 0.08 1.75 4.38 86.31 0.38 2.12 16 13 N -0.67 -20.18 5.72 -517.94 -2.96 -23.15 16 14 C 0.06 2.17 6.17 85.56 0.53 2.70 16 15 C 0.44 20.77 7.82 87.66 0.69 21.46 16 16 O -0.62 -33.74 15.78 -3.06 -0.05 -33.79 16 17 N -0.57 -29.50 5.29 -306.98 -1.62 -31.12 16 18 C -0.33 -18.93 9.68 84.04 0.81 -18.11 16 19 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 20 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 21 N -0.92 -49.95 13.05 21.66 0.28 -49.67 16 22 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 C 0.11 1.93 6.13 86.52 0.53 2.46 16 27 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 1.36 7.87 -2.38 -0.02 1.34 16 30 H 0.10 1.67 5.14 -2.38 -0.01 1.66 16 31 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.07 1.58 7.59 -2.39 -0.02 1.56 16 33 H 0.09 1.53 7.71 -2.39 -0.02 1.51 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.11 6.51 -2.39 -0.02 1.10 16 36 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.35 10.72 6.43 -89.70 -0.58 10.14 16 40 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.40 19.41 7.90 -92.71 -0.73 18.67 16 43 H 0.28 14.11 8.31 -92.72 -0.77 13.34 16 44 H 0.10 1.34 7.86 -2.39 -0.02 1.32 16 45 H 0.08 1.49 7.60 -2.39 -0.02 1.48 16 Total: -1.00 -69.35 374.51 2.12 -67.23 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.27 Total: 37.50 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 6.06 Total: 22.56 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -6.99 Total: -118.24 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.10 Total: -48.41 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 1.39 Total: -5.47 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -69.35 2.12 -67.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649457380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.195 kcal (2) G-P(sol) polarization free energy of solvation -69.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds