Wall clock time and date at job start Tue Mar 31 2020 17:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38256 * 120.00076 * 2 1 4 4 C 1.38214 * 120.00274 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99678 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00128 * 359.70007 * 5 4 3 7 7 C 1.38208 * 120.00076 * 179.97438 * 2 1 3 8 8 C 1.50700 * 119.99946 * 359.97438 * 7 2 1 9 9 C 1.53003 * 109.47213 * 85.00446 * 8 7 2 10 10 H 1.09000 * 109.46865 * 305.00297 * 9 8 7 11 11 C 1.52995 * 109.47468 * 185.00351 * 9 8 7 12 12 N 1.46500 * 109.47069 * 64.99615 * 9 8 7 13 13 C 1.34773 * 119.99942 * 205.00050 * 12 9 8 14 14 O 1.21283 * 120.00314 * 0.02562 * 13 12 9 15 15 C 1.50707 * 119.99820 * 180.02562 * 13 12 9 16 16 O 1.45202 * 109.46995 * 179.97438 * 15 13 12 17 17 C 1.34228 * 117.00107 * 179.97438 * 16 15 13 18 18 O 1.20822 * 119.99844 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00316 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.46889 * 300.00737 * 19 17 16 21 21 C 1.53000 * 109.46939 * 60.00271 * 19 17 16 22 22 C 1.50694 * 109.47166 * 180.02562 * 19 17 16 23 23 H 1.08000 * 120.00563 * 0.02562 * 22 19 17 24 24 C 1.37885 * 119.99902 * 180.02562 * 22 19 17 25 25 N 1.31516 * 119.99913 * 359.97438 * 24 22 19 26 26 Si 1.86798 * 119.99766 * 179.97438 * 24 22 19 27 27 H 1.48506 * 109.46985 * 179.97438 * 26 24 22 28 28 H 1.48494 * 109.47276 * 299.99832 * 26 24 22 29 29 H 1.48498 * 109.47150 * 60.00043 * 26 24 22 30 30 H 1.08994 * 109.46637 * 270.02167 * 1 2 3 31 31 H 1.09001 * 109.46959 * 30.01856 * 1 2 3 32 32 H 1.08997 * 109.47124 * 150.02215 * 1 2 3 33 33 H 1.08000 * 119.99746 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.00554 * 179.97438 * 4 3 2 35 35 H 1.08007 * 120.00142 * 179.97438 * 5 4 3 36 36 H 1.08002 * 120.00363 * 180.29519 * 6 5 4 37 37 H 1.09004 * 109.47225 * 325.00330 * 8 7 2 38 38 H 1.08999 * 109.47411 * 205.00515 * 8 7 2 39 39 H 1.08996 * 109.47656 * 59.99159 * 11 9 8 40 40 H 1.09004 * 109.47603 * 179.97438 * 11 9 8 41 41 H 1.09007 * 109.46727 * 299.99612 * 11 9 8 42 42 H 0.97002 * 119.99922 * 25.00990 * 12 9 8 43 43 H 1.09001 * 109.46984 * 60.00372 * 15 13 12 44 44 H 1.08998 * 109.47262 * 299.99801 * 15 13 12 45 45 H 1.08997 * 109.47359 * 180.02562 * 21 19 17 46 46 H 1.09007 * 109.47356 * 300.00035 * 21 19 17 47 47 H 1.09000 * 109.47156 * 59.99760 * 21 19 17 48 48 H 0.97001 * 119.99646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1969 0.0063 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0017 9 6 1.0802 -2.8819 -1.4349 10 1 0.5305 -2.0630 -1.8989 11 6 0.2092 -4.1396 -1.4247 12 7 2.3043 -3.1417 -2.1968 13 6 2.3072 -2.9981 -3.5368 14 8 1.2967 -2.6534 -4.1121 15 6 3.5663 -3.2659 -4.3206 16 8 3.3137 -3.0437 -5.7330 17 6 4.3411 -3.2401 -6.5742 18 8 5.4159 -3.5866 -6.1445 19 6 4.1542 -3.0283 -8.0544 20 1 3.3799 -3.7013 -8.4228 21 6 3.7362 -1.5796 -8.3136 22 6 5.4493 -3.3136 -8.7702 23 1 6.3206 -3.6183 -8.2094 24 6 5.5220 -3.1857 -10.1411 25 7 4.4609 -2.8153 -10.8242 26 14 7.1276 -3.5387 -11.0282 27 1 6.9434 -3.3302 -12.4870 28 1 8.1825 -2.6222 -10.5260 29 1 7.5331 -4.9450 -10.7771 30 1 -0.3632 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6583 2.1326 -0.0004 34 1 4.1205 2.1326 0.0001 35 1 5.3518 0.0000 0.0005 36 1 4.1206 -2.1323 0.0111 37 1 0.5340 -2.3954 0.5914 38 1 2.0696 -3.2821 0.4364 39 1 -0.7015 -3.9464 -0.8578 40 1 -0.0508 -4.4100 -2.4482 41 1 0.7590 -4.9585 -0.9607 42 1 3.1126 -3.4171 -1.7367 43 1 3.8779 -4.2989 -4.1657 44 1 4.3549 -2.5939 -3.9820 45 1 3.6005 -1.4264 -9.3842 46 1 2.7993 -1.3735 -7.7959 47 1 4.5104 -0.9065 -7.9451 48 1 4.5122 -2.7250 -11.7886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649875442.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:51 Heat of formation + Delta-G solvation = -117.033761 kcal Electronic energy + Delta-G solvation = -28396.573399 eV Core-core repulsion = 24415.896522 eV Total energy + Delta-G solvation = -3980.676877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.40271 -39.76246 -39.02902 -36.35483 -35.51302 -33.86873 -33.37587 -32.30690 -31.08728 -30.58263 -28.06602 -27.63893 -26.41423 -25.17239 -23.23015 -22.47883 -21.93698 -20.79928 -20.54166 -19.80027 -17.29593 -16.95701 -16.63393 -16.52238 -16.08595 -15.90210 -15.49060 -15.33339 -15.29355 -14.63062 -14.23380 -14.12844 -13.94774 -13.53076 -13.38039 -13.32035 -12.86471 -12.69405 -12.65782 -12.44885 -12.35799 -12.34983 -12.13059 -11.98326 -11.49409 -11.30365 -11.17322 -11.03875 -11.02146 -10.80650 -10.66510 -10.33438 -10.16398 -10.05299 -9.78202 -9.25005 -9.15868 -9.03389 -9.02654 -8.78573 -8.42770 -6.08137 -4.14186 1.10242 1.15278 2.62234 2.66485 3.26713 3.33861 3.36530 3.40829 3.48772 3.78941 4.34629 4.43145 4.49174 4.54318 4.67596 4.74074 4.80454 4.90904 5.01495 5.09225 5.14233 5.24494 5.27159 5.29943 5.30910 5.34369 5.37346 5.44465 5.47208 5.54837 5.74006 5.81686 5.92940 6.00065 6.03556 6.22850 6.27946 6.32078 6.41803 6.71918 6.77813 6.91967 6.93015 7.15363 7.35411 7.47082 7.77164 7.96432 8.15329 8.19726 8.80748 8.93984 9.50985 10.99184 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.002402 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.799720 B =11656.279480 C =12256.092108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 C -0.118 4.118 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.112 4.112 7 C -0.083 4.083 8 C -0.089 4.089 9 C 0.148 3.852 10 H 0.092 0.908 11 C -0.166 4.166 12 N -0.725 5.725 13 C 0.519 3.481 14 O -0.512 6.512 15 C 0.044 3.956 16 O -0.341 6.341 17 C 0.467 3.533 18 O -0.518 6.518 19 C 0.060 3.940 20 H 0.066 0.934 21 C -0.134 4.134 22 C -0.514 4.514 23 H 0.075 0.925 24 C 0.062 3.938 25 N -0.891 5.891 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.275 1.275 29 H -0.275 1.275 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.398 0.602 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.026 0.974 47 H 0.030 0.970 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 3.405 26.416 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.081 4.081 3 C -0.136 4.136 4 C -0.138 4.138 5 C -0.141 4.141 6 C -0.130 4.130 7 C -0.083 4.083 8 C -0.127 4.127 9 C 0.044 3.956 10 H 0.110 0.890 11 C -0.224 4.224 12 N -0.380 5.380 13 C 0.304 3.696 14 O -0.386 6.386 15 C -0.035 4.035 16 O -0.258 6.258 17 C 0.311 3.689 18 O -0.405 6.405 19 C 0.041 3.959 20 H 0.084 0.916 21 C -0.192 4.192 22 C -0.552 4.552 23 H 0.093 0.907 24 C -0.140 4.140 25 N -0.529 5.529 26 Si 0.733 3.267 27 H -0.212 1.212 28 H -0.201 1.201 29 H -0.201 1.201 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.233 0.767 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.115 0.885 46 H 0.045 0.955 47 H 0.050 0.950 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.860 3.593 25.929 27.331 hybrid contribution 1.515 -0.294 -0.099 1.547 sum -6.344 3.299 25.830 26.802 Atomic orbital electron populations 1.20890 0.91294 1.03298 1.02213 1.19767 0.96023 0.92655 0.99685 1.21037 0.94330 0.97478 1.00788 1.21145 0.94339 0.98165 1.00109 1.21139 0.99962 0.92565 1.00391 1.20997 0.93445 0.98103 1.00471 1.19628 0.93654 0.94261 1.00743 1.20952 1.01065 0.94487 0.96204 1.20931 0.85801 0.98418 0.90424 0.89000 1.22214 0.99551 0.97441 1.03185 1.45881 1.14171 1.71482 1.06453 1.20260 0.89902 0.77214 0.82209 1.90740 1.34226 1.44400 1.69222 1.22448 0.95488 1.03272 0.82243 1.86738 1.42461 1.81333 1.15272 1.25547 0.80827 0.71442 0.91042 1.90491 1.27557 1.43836 1.78641 1.18772 1.00283 0.97022 0.79793 0.91636 1.21741 0.97346 0.95322 1.04810 1.21086 0.95764 1.46654 0.91716 0.90678 1.24943 0.97008 0.94805 0.97219 1.69881 1.28577 1.46961 1.07518 0.86423 0.83176 0.79016 0.78036 1.21207 1.20096 1.20096 0.91150 0.91411 0.91080 0.86168 0.86170 0.86077 0.86261 0.89116 0.90295 0.91546 0.91532 0.92289 0.76746 0.88928 0.88959 0.88524 0.95484 0.95031 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.22 36.01 0.33 -0.52 16 2 C -0.08 -0.73 5.88 -104.63 -0.62 -1.35 16 3 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 4 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 5 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 6 C -0.11 -0.95 9.38 -39.58 -0.37 -1.32 16 7 C -0.08 -0.71 4.88 -104.62 -0.51 -1.22 16 8 C -0.09 -0.59 4.19 -27.88 -0.12 -0.70 16 9 C 0.15 1.33 2.31 -67.93 -0.16 1.17 16 10 H 0.09 1.04 6.46 -51.93 -0.34 0.70 16 11 C -0.17 -1.34 9.48 37.15 0.35 -0.99 16 12 N -0.72 -7.37 4.68 -53.80 -0.25 -7.62 16 13 C 0.52 7.73 7.87 -10.98 -0.09 7.65 16 14 O -0.51 -9.79 16.16 -14.10 -0.23 -10.02 16 15 C 0.04 0.70 5.94 36.01 0.21 0.91 16 16 O -0.34 -7.30 9.66 -45.90 -0.44 -7.74 16 17 C 0.47 11.23 7.25 36.00 0.26 11.49 16 18 O -0.52 -13.04 15.21 -18.75 -0.29 -13.33 16 19 C 0.06 1.58 2.74 -92.93 -0.25 1.33 16 20 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 21 C -0.13 -3.33 8.90 37.16 0.33 -3.00 16 22 C -0.51 -14.61 8.37 -34.44 -0.29 -14.90 16 23 H 0.08 2.20 6.76 -52.49 -0.35 1.84 16 24 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 25 N -0.89 -25.21 11.32 55.43 0.63 -24.59 16 26 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.07 0.49 5.49 -51.93 -0.29 0.21 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.12 0.77 8.03 -52.49 -0.42 0.34 16 37 H 0.09 0.48 6.99 -51.93 -0.36 0.12 16 38 H 0.08 0.41 8.05 -51.93 -0.42 -0.01 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.40 2.96 8.40 -40.82 -0.34 2.62 16 43 H 0.09 1.31 8.13 -51.93 -0.42 0.89 16 44 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 45 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 46 H 0.03 0.61 8.11 -51.93 -0.42 0.19 16 47 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 399.48 15.07 6.02 6.02 Total: -1.00 -34.04 399.48 -9.23 -43.27 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.46 Total: 1.65 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -2.18 Total: -4.25 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.38 Total: -32.20 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.96 Total: -31.09 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.04 -9.23 -43.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649875442.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.768 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds