Wall clock time and date at job start Tue Mar 31 2020 17:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38256 * 120.00076 * 2 1 4 4 C 1.38214 * 120.00274 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99678 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00128 * 359.70007 * 5 4 3 7 7 C 1.38208 * 120.00076 * 179.97438 * 2 1 3 8 8 C 1.50700 * 119.99946 * 359.97438 * 7 2 1 9 9 C 1.53003 * 109.47213 * 85.00446 * 8 7 2 10 10 H 1.09000 * 109.46865 * 305.00297 * 9 8 7 11 11 C 1.52995 * 109.47468 * 185.00351 * 9 8 7 12 12 N 1.46500 * 109.47069 * 64.99615 * 9 8 7 13 13 C 1.34773 * 119.99942 * 205.00050 * 12 9 8 14 14 O 1.21283 * 120.00314 * 0.02562 * 13 12 9 15 15 C 1.50707 * 119.99820 * 180.02562 * 13 12 9 16 16 O 1.45202 * 109.46995 * 179.97438 * 15 13 12 17 17 C 1.34228 * 117.00107 * 179.97438 * 16 15 13 18 18 O 1.20822 * 119.99844 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00316 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.46889 * 300.00737 * 19 17 16 21 21 C 1.53000 * 109.46939 * 60.00271 * 19 17 16 22 22 C 1.50694 * 109.47166 * 180.02562 * 19 17 16 23 23 H 1.08000 * 120.00563 * 0.02562 * 22 19 17 24 24 C 1.37885 * 119.99902 * 180.02562 * 22 19 17 25 25 N 1.31516 * 119.99913 * 359.97438 * 24 22 19 26 26 Si 1.86798 * 119.99766 * 179.97438 * 24 22 19 27 27 H 1.48506 * 109.46985 * 179.97438 * 26 24 22 28 28 H 1.48494 * 109.47276 * 299.99832 * 26 24 22 29 29 H 1.48498 * 109.47150 * 60.00043 * 26 24 22 30 30 H 1.08994 * 109.46637 * 270.02167 * 1 2 3 31 31 H 1.09001 * 109.46959 * 30.01856 * 1 2 3 32 32 H 1.08997 * 109.47124 * 150.02215 * 1 2 3 33 33 H 1.08000 * 119.99746 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.00554 * 179.97438 * 4 3 2 35 35 H 1.08007 * 120.00142 * 179.97438 * 5 4 3 36 36 H 1.08002 * 120.00363 * 180.29519 * 6 5 4 37 37 H 1.09004 * 109.47225 * 325.00330 * 8 7 2 38 38 H 1.08999 * 109.47411 * 205.00515 * 8 7 2 39 39 H 1.08996 * 109.47656 * 59.99159 * 11 9 8 40 40 H 1.09004 * 109.47603 * 179.97438 * 11 9 8 41 41 H 1.09007 * 109.46727 * 299.99612 * 11 9 8 42 42 H 0.97002 * 119.99922 * 25.00990 * 12 9 8 43 43 H 1.09001 * 109.46984 * 60.00372 * 15 13 12 44 44 H 1.08998 * 109.47262 * 299.99801 * 15 13 12 45 45 H 1.08997 * 109.47359 * 180.02562 * 21 19 17 46 46 H 1.09007 * 109.47356 * 300.00035 * 21 19 17 47 47 H 1.09000 * 109.47156 * 59.99760 * 21 19 17 48 48 H 0.97001 * 119.99646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1969 0.0063 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0017 9 6 1.0802 -2.8819 -1.4349 10 1 0.5305 -2.0630 -1.8989 11 6 0.2092 -4.1396 -1.4247 12 7 2.3043 -3.1417 -2.1968 13 6 2.3072 -2.9981 -3.5368 14 8 1.2967 -2.6534 -4.1121 15 6 3.5663 -3.2659 -4.3206 16 8 3.3137 -3.0437 -5.7330 17 6 4.3411 -3.2401 -6.5742 18 8 5.4159 -3.5866 -6.1445 19 6 4.1542 -3.0283 -8.0544 20 1 3.3799 -3.7013 -8.4228 21 6 3.7362 -1.5796 -8.3136 22 6 5.4493 -3.3136 -8.7702 23 1 6.3206 -3.6183 -8.2094 24 6 5.5220 -3.1857 -10.1411 25 7 4.4609 -2.8153 -10.8242 26 14 7.1276 -3.5387 -11.0282 27 1 6.9434 -3.3302 -12.4870 28 1 8.1825 -2.6222 -10.5260 29 1 7.5331 -4.9450 -10.7771 30 1 -0.3632 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6583 2.1326 -0.0004 34 1 4.1205 2.1326 0.0001 35 1 5.3518 0.0000 0.0005 36 1 4.1206 -2.1323 0.0111 37 1 0.5340 -2.3954 0.5914 38 1 2.0696 -3.2821 0.4364 39 1 -0.7015 -3.9464 -0.8578 40 1 -0.0508 -4.4100 -2.4482 41 1 0.7590 -4.9585 -0.9607 42 1 3.1126 -3.4171 -1.7367 43 1 3.8779 -4.2989 -4.1657 44 1 4.3549 -2.5939 -3.9820 45 1 3.6005 -1.4264 -9.3842 46 1 2.7993 -1.3735 -7.7959 47 1 4.5104 -0.9065 -7.9451 48 1 4.5122 -2.7250 -11.7886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649875442.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:50 Heat of formation + Delta-G solvation = -135.338516 kcal Electronic energy + Delta-G solvation = -28397.367153 eV Core-core repulsion = 24415.896522 eV Total energy + Delta-G solvation = -3981.470631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.65787 -40.97453 -40.14381 -37.58754 -36.94764 -35.93969 -34.11596 -33.07665 -32.71281 -31.78126 -29.34750 -28.22462 -27.29603 -27.01112 -25.03812 -23.30087 -22.70432 -21.75642 -21.60298 -21.33748 -18.71185 -18.58159 -18.01642 -17.68141 -17.40019 -17.26919 -17.01253 -16.25659 -16.18625 -15.98258 -15.67799 -15.10050 -14.78152 -14.68841 -14.63358 -14.24112 -13.98283 -13.92303 -13.70713 -13.46132 -13.32250 -13.24018 -12.98681 -12.97169 -12.87287 -12.79000 -12.73497 -12.62460 -12.31806 -12.04824 -11.98279 -11.80328 -11.77641 -11.65619 -11.22080 -11.13267 -10.93390 -10.54137 -10.20316 -9.67656 -9.42644 -8.19805 -6.34284 0.45662 0.50847 1.34313 1.36713 1.44789 1.45413 1.46364 1.55460 2.35558 2.51271 2.84335 3.10204 3.57978 3.75870 3.90778 3.97125 4.02155 4.03324 4.09967 4.17188 4.23371 4.29962 4.39447 4.49200 4.53148 4.65657 4.74978 4.75677 4.82582 4.85306 4.87493 4.91577 4.95870 4.98116 5.05549 5.22075 5.28599 5.32188 5.36938 5.39943 5.44818 5.61408 5.65297 5.66387 5.76666 5.85288 6.06857 6.16709 6.40627 6.72188 6.96256 7.12638 7.34658 8.86878 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.002402 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.799720 B =11656.279480 C =12256.092108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.097 4.097 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.139 4.139 6 C -0.120 4.120 7 C -0.094 4.094 8 C -0.079 4.079 9 C 0.148 3.852 10 H 0.067 0.933 11 C -0.161 4.161 12 N -0.701 5.701 13 C 0.523 3.477 14 O -0.562 6.562 15 C 0.035 3.965 16 O -0.351 6.351 17 C 0.476 3.524 18 O -0.533 6.533 19 C 0.051 3.949 20 H 0.048 0.952 21 C -0.121 4.121 22 C -0.539 4.539 23 H 0.062 0.938 24 C 0.020 3.980 25 N -0.911 5.911 26 Si 0.968 3.032 27 H -0.276 1.276 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.415 0.585 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.040 0.960 47 H 0.031 0.969 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.803 2.679 28.189 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.097 4.097 3 C -0.155 4.155 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.138 4.138 7 C -0.094 4.094 8 C -0.116 4.116 9 C 0.044 3.956 10 H 0.085 0.915 11 C -0.219 4.219 12 N -0.356 5.356 13 C 0.308 3.692 14 O -0.440 6.440 15 C -0.042 4.042 16 O -0.268 6.268 17 C 0.321 3.679 18 O -0.422 6.422 19 C 0.032 3.968 20 H 0.066 0.934 21 C -0.179 4.179 22 C -0.577 4.577 23 H 0.080 0.920 24 C -0.180 4.180 25 N -0.550 5.550 26 Si 0.792 3.208 27 H -0.201 1.201 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.095 0.905 42 H 0.253 0.747 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.050 0.950 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.301 2.861 27.767 28.853 hybrid contribution 1.282 -0.045 -0.527 1.386 sum -6.020 2.816 27.240 28.039 Atomic orbital electron populations 1.20914 0.90259 1.03220 1.03199 1.20099 0.97063 0.92956 0.99541 1.21286 0.94692 0.98203 1.01292 1.21401 0.94639 0.98945 1.00279 1.21417 1.00789 0.92852 1.00643 1.21320 0.93700 0.98855 0.99916 1.19891 0.93963 0.94916 1.00610 1.20938 1.02165 0.94094 0.94442 1.21049 0.84994 0.98192 0.91362 0.91492 1.22174 1.00570 0.97369 1.01805 1.45751 1.15566 1.69433 1.04822 1.20109 0.88683 0.76920 0.83491 1.90729 1.35604 1.47159 1.70472 1.22879 0.96881 1.05186 0.79237 1.86650 1.41294 1.80834 1.18002 1.24873 0.80951 0.71287 0.90749 1.90467 1.28137 1.44616 1.78955 1.18679 0.99093 0.97273 0.81762 0.93391 1.21566 0.97964 0.94638 1.03735 1.21227 0.96159 1.47778 0.92488 0.92001 1.25713 1.00282 0.94263 0.97705 1.69977 1.30191 1.46880 1.07916 0.85460 0.79178 0.78899 0.77227 1.20058 1.19674 1.19687 0.89536 0.91709 0.90976 0.85366 0.85208 0.84971 0.84142 0.87325 0.87940 0.89452 0.94587 0.90461 0.74747 0.86716 0.87241 0.90238 0.94105 0.94954 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.22 71.24 0.66 -0.89 16 2 C -0.10 -1.63 5.88 -19.87 -0.12 -1.75 16 3 C -0.14 -2.43 9.70 22.27 0.22 -2.22 16 4 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 5 C -0.14 -2.32 10.05 22.27 0.22 -2.09 16 6 C -0.12 -1.78 9.38 22.27 0.21 -1.58 16 7 C -0.09 -1.41 4.88 -19.87 -0.10 -1.51 16 8 C -0.08 -0.80 4.19 29.85 0.13 -0.67 16 9 C 0.15 2.36 2.31 44.99 0.10 2.46 16 10 H 0.07 1.47 6.46 -2.39 -0.02 1.45 16 11 C -0.16 -2.28 9.48 71.98 0.68 -1.59 16 12 N -0.70 -12.88 4.68 -442.53 -2.07 -14.95 16 13 C 0.52 15.15 7.87 87.66 0.69 15.84 16 14 O -0.56 -21.71 16.16 15.76 0.25 -21.46 16 15 C 0.04 1.08 5.94 71.24 0.42 1.51 16 16 O -0.35 -15.00 9.66 -45.04 -0.43 -15.43 16 17 C 0.48 23.02 7.25 71.24 0.52 23.53 16 18 O -0.53 -26.69 15.21 21.98 0.33 -26.36 16 19 C 0.05 2.72 2.74 -12.29 -0.03 2.69 16 20 H 0.05 2.70 8.14 -2.39 -0.02 2.68 16 21 C -0.12 -6.09 8.90 71.98 0.64 -5.45 16 22 C -0.54 -30.95 8.37 25.60 0.21 -30.74 16 23 H 0.06 3.66 6.76 -2.91 -0.02 3.64 16 24 C 0.02 1.13 5.30 84.66 0.45 1.58 16 25 N -0.91 -51.79 11.32 21.45 0.24 -51.55 16 26 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 27 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 29 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.86 8.09 -2.39 -0.02 0.84 16 32 H 0.07 0.91 5.49 -2.39 -0.01 0.89 16 33 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.14 1.36 8.03 -2.91 -0.02 1.34 16 37 H 0.11 0.77 6.99 -2.39 -0.02 0.76 16 38 H 0.10 0.60 8.05 -2.39 -0.02 0.58 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.08 0.81 8.14 -2.38 -0.02 0.80 16 42 H 0.42 4.89 8.40 -92.71 -0.78 4.11 16 43 H 0.12 3.03 8.13 -2.39 -0.02 3.01 16 44 H 0.11 3.01 8.13 -2.39 -0.02 2.99 16 45 H 0.08 4.26 6.07 -2.39 -0.01 4.25 16 46 H 0.04 1.87 8.11 -2.38 -0.02 1.85 16 47 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -74.31 399.48 5.66 -68.64 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.19 Total: 18.06 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.13 Total: -3.03 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -1.83 Total: -66.50 kcal Atomic # 8 Polarization: -63.40 SS G_CDS: 0.15 Total: -63.25 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -74.31 5.66 -68.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649875442.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.696 kcal (2) G-P(sol) polarization free energy of solvation -74.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds