Wall clock time and date at job start Tue Mar 31 2020 17:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 119.99803 * 2 1 4 4 C 1.38213 * 119.99512 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00399 * 0.02562 * 4 3 2 6 6 C 1.38211 * 119.99688 * 359.95970 * 5 4 3 7 7 C 1.38214 * 120.00071 * 179.71991 * 2 1 3 8 8 C 1.50701 * 120.00051 * 0.02562 * 7 2 1 9 9 C 1.52995 * 109.47509 * 84.99528 * 8 7 2 10 10 H 1.08999 * 109.47162 * 305.00164 * 9 8 7 11 11 C 1.53004 * 109.47608 * 185.00206 * 9 8 7 12 12 N 1.46501 * 109.47025 * 64.99728 * 9 8 7 13 13 C 1.34774 * 120.00177 * 204.99818 * 12 9 8 14 14 O 1.21280 * 120.00334 * 0.02562 * 13 12 9 15 15 C 1.50706 * 120.00000 * 180.02562 * 13 12 9 16 16 O 1.45195 * 109.47231 * 180.02562 * 15 13 12 17 17 C 1.34230 * 117.00294 * 180.02562 * 16 15 13 18 18 O 1.20828 * 119.99599 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00315 * 179.97438 * 17 16 15 20 20 H 1.09005 * 109.47275 * 59.99816 * 19 17 16 21 21 C 1.52997 * 109.47031 * 299.99920 * 19 17 16 22 22 C 1.50699 * 109.46995 * 179.97438 * 19 17 16 23 23 H 1.07998 * 120.00059 * 35.10701 * 22 19 17 24 24 C 1.37880 * 119.99876 * 215.09976 * 22 19 17 25 25 N 1.31509 * 120.00081 * 184.91470 * 24 22 19 26 26 Si 1.86800 * 119.99953 * 4.91487 * 24 22 19 27 27 H 1.48504 * 109.47039 * 84.82282 * 26 24 22 28 28 H 1.48498 * 109.47006 * 204.82359 * 26 24 22 29 29 H 1.48496 * 109.47335 * 324.82323 * 26 24 22 30 30 H 1.09006 * 109.47033 * 90.00242 * 1 2 3 31 31 H 1.08997 * 109.47272 * 330.00201 * 1 2 3 32 32 H 1.08998 * 109.47407 * 210.00093 * 1 2 3 33 33 H 1.07994 * 120.00072 * 359.97438 * 3 2 1 34 34 H 1.08004 * 119.99760 * 179.97438 * 4 3 2 35 35 H 1.08002 * 119.99615 * 179.97438 * 5 4 3 36 36 H 1.07999 * 119.99749 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.47093 * 204.99894 * 8 7 2 38 38 H 1.09008 * 109.46912 * 324.99677 * 8 7 2 39 39 H 1.09005 * 109.46602 * 60.00033 * 11 9 8 40 40 H 1.08997 * 109.46873 * 180.02562 * 11 9 8 41 41 H 1.08999 * 109.46825 * 300.00165 * 11 9 8 42 42 H 0.97000 * 119.99681 * 25.00587 * 12 9 8 43 43 H 1.09004 * 109.47005 * 300.00076 * 15 13 12 44 44 H 1.08996 * 109.47013 * 60.00034 * 15 13 12 45 45 H 1.08999 * 109.47166 * 55.05710 * 21 19 17 46 46 H 1.09000 * 109.47426 * 175.06230 * 21 19 17 47 47 H 1.08998 * 109.46872 * 295.05787 * 21 19 17 48 48 H 0.96999 * 120.00435 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0008 7 6 2.1981 -1.1969 0.0059 8 6 1.4446 -2.5021 0.0116 9 6 1.0812 -2.8876 -1.4236 10 1 0.5317 -2.0706 -1.8912 11 6 0.2101 -4.1454 -1.4090 12 7 2.3057 -3.1504 -2.1837 13 6 2.3095 -3.0122 -3.5243 14 8 1.2994 -2.6699 -4.1016 15 6 3.5691 -3.2831 -4.3062 16 8 3.3177 -3.0654 -5.7195 17 6 4.3455 -3.2660 -6.5593 18 8 5.4198 -3.6116 -6.1275 19 6 4.1595 -3.0602 -8.0405 20 1 3.8625 -2.0286 -8.2296 21 6 3.0724 -4.0062 -8.5543 22 6 5.4552 -3.3482 -8.7542 23 1 6.1081 -4.1294 -8.3939 24 6 5.8069 -2.6144 -9.8673 25 7 6.8883 -2.9281 -10.5469 26 14 4.7476 -1.1748 -10.4100 27 1 5.1411 0.0418 -9.6547 28 1 4.9399 -0.9389 -11.8635 29 1 3.3196 -1.4827 -10.1433 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 0.8900 0.5138 32 1 -0.3634 -0.8899 0.5138 33 1 1.6583 2.1326 -0.0004 34 1 4.1204 2.1326 0.0001 35 1 5.3517 0.0000 0.0005 36 1 4.1206 -2.1323 0.0013 37 1 2.0694 -3.2804 0.4498 38 1 0.5336 -2.3931 0.6003 39 1 -0.7010 -3.9497 -0.8435 40 1 -0.0484 -4.4202 -2.4316 41 1 0.7596 -4.9624 -0.9414 42 1 3.1137 -3.4239 -1.7220 43 1 4.3575 -2.6097 -3.9698 44 1 3.8806 -4.3154 -4.1469 45 1 2.1594 -3.8578 -7.9777 46 1 2.8761 -3.7972 -9.6059 47 1 3.4073 -5.0378 -8.4454 48 1 7.1360 -2.4117 -11.3297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649875444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:55 Heat of formation + Delta-G solvation = -114.781519 kcal Electronic energy + Delta-G solvation = -28454.080457 eV Core-core repulsion = 24473.501245 eV Total energy + Delta-G solvation = -3980.579212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.43436 -39.81647 -39.08527 -36.38674 -35.56354 -33.80754 -33.41099 -32.33559 -31.42817 -31.02049 -28.18635 -27.64715 -26.45164 -25.28965 -23.31963 -22.49822 -21.97471 -20.80228 -20.55586 -19.69004 -17.33625 -17.30030 -16.81201 -16.59966 -16.26934 -16.10038 -15.56340 -15.38091 -15.21064 -14.72155 -14.21942 -14.17555 -13.96454 -13.60281 -13.41133 -13.31842 -12.97465 -12.77192 -12.62116 -12.56409 -12.44530 -12.25958 -12.18128 -12.16574 -12.02215 -11.33970 -11.31497 -11.21022 -11.11531 -11.03610 -10.76700 -10.40216 -10.21174 -9.91151 -9.79554 -9.29445 -9.27360 -9.21997 -9.04972 -8.81337 -8.64337 -6.15506 -4.17257 1.08594 1.13246 2.57060 2.60343 3.15168 3.26609 3.33994 3.34590 3.47532 3.70042 4.31343 4.33647 4.46649 4.52469 4.64447 4.68537 4.77885 4.89149 4.97641 5.01709 5.14064 5.17081 5.22881 5.25559 5.26567 5.33080 5.39996 5.42683 5.45202 5.53211 5.70670 5.78816 5.85101 5.91253 5.95928 6.19971 6.20457 6.25886 6.29383 6.39460 6.48953 6.53483 6.75951 6.82311 7.03775 7.21299 7.31193 7.48690 8.13822 8.37323 8.73493 8.96938 9.42302 10.96732 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.002632 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.459433 B =10637.600261 C =11358.900489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.082 4.082 3 C -0.119 4.119 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.112 4.112 7 C -0.084 4.084 8 C -0.091 4.091 9 C 0.150 3.850 10 H 0.091 0.909 11 C -0.165 4.165 12 N -0.725 5.725 13 C 0.519 3.481 14 O -0.515 6.515 15 C 0.043 3.957 16 O -0.345 6.345 17 C 0.464 3.536 18 O -0.502 6.502 19 C 0.027 3.973 20 H 0.066 0.934 21 C -0.135 4.135 22 C -0.506 4.506 23 H 0.088 0.912 24 C 0.077 3.923 25 N -0.888 5.888 26 Si 0.868 3.132 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.260 1.260 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.399 0.601 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.040 0.960 46 H 0.058 0.942 47 H 0.051 0.949 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.705 3.603 26.303 29.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.082 4.082 3 C -0.137 4.137 4 C -0.137 4.137 5 C -0.140 4.140 6 C -0.130 4.130 7 C -0.084 4.084 8 C -0.128 4.128 9 C 0.045 3.955 10 H 0.109 0.891 11 C -0.224 4.224 12 N -0.379 5.379 13 C 0.305 3.695 14 O -0.388 6.388 15 C -0.035 4.035 16 O -0.262 6.262 17 C 0.307 3.693 18 O -0.387 6.387 19 C 0.007 3.993 20 H 0.084 0.916 21 C -0.193 4.193 22 C -0.543 4.543 23 H 0.106 0.894 24 C -0.126 4.126 25 N -0.525 5.525 26 Si 0.695 3.305 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.184 1.184 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.233 0.767 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.059 0.941 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.999 3.792 25.839 29.172 hybrid contribution 0.336 0.716 0.020 0.791 sum -12.663 4.509 25.859 29.144 Atomic orbital electron populations 1.20895 0.91308 1.02749 1.02702 1.19758 0.96017 0.92667 0.99712 1.21030 0.94333 0.97461 1.00850 1.21151 0.94335 0.98182 1.00065 1.21147 0.99998 0.92554 1.00350 1.20995 0.93436 0.98122 1.00408 1.19621 0.93659 0.94245 1.00841 1.20982 1.01109 0.94486 0.96241 1.20899 0.85722 0.98362 0.90472 0.89081 1.22209 0.99566 0.97445 1.03136 1.45893 1.14223 1.71423 1.06405 1.20260 0.89870 0.77168 0.82235 1.90729 1.34304 1.44635 1.69170 1.22472 0.95535 1.03446 0.82036 1.86723 1.42621 1.81467 1.15401 1.25405 0.81022 0.72361 0.90545 1.90542 1.27290 1.42658 1.78256 1.19192 0.98921 0.98391 0.82781 0.91599 1.21930 0.96613 0.99871 1.00917 1.20749 1.02793 1.20427 1.10376 0.89387 1.24985 0.94853 0.96888 0.95889 1.69866 1.24500 1.39917 1.18224 0.86986 0.81792 0.83480 0.78282 1.19816 1.20916 1.18415 0.90824 0.91616 0.91186 0.86182 0.86163 0.86038 0.86239 0.90316 0.88970 0.91543 0.91579 0.92288 0.76697 0.88840 0.88805 0.94074 0.92278 0.92957 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.41 36.01 0.34 -0.48 16 2 C -0.08 -0.71 5.88 -104.62 -0.62 -1.33 16 3 C -0.12 -1.06 9.70 -39.58 -0.38 -1.45 16 4 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 5 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 6 C -0.11 -0.93 9.33 -39.59 -0.37 -1.30 16 7 C -0.08 -0.69 4.89 -104.62 -0.51 -1.21 16 8 C -0.09 -0.57 4.39 -27.88 -0.12 -0.69 16 9 C 0.15 1.28 2.56 -67.93 -0.17 1.11 16 10 H 0.09 0.99 7.37 -51.93 -0.38 0.61 16 11 C -0.17 -1.28 9.48 37.16 0.35 -0.93 16 12 N -0.72 -7.08 4.66 -53.80 -0.25 -7.33 16 13 C 0.52 7.44 7.87 -10.98 -0.09 7.35 16 14 O -0.51 -9.43 16.16 -14.10 -0.23 -9.66 16 15 C 0.04 0.66 5.94 36.01 0.21 0.88 16 16 O -0.34 -7.03 9.56 -45.90 -0.44 -7.47 16 17 C 0.46 10.77 7.25 36.00 0.26 11.04 16 18 O -0.50 -12.63 15.52 -18.75 -0.29 -12.93 16 19 C 0.03 0.66 2.40 -92.93 -0.22 0.43 16 20 H 0.07 1.59 5.29 -51.93 -0.27 1.31 16 21 C -0.14 -2.91 9.14 37.16 0.34 -2.57 16 22 C -0.51 -14.49 8.36 -34.44 -0.29 -14.78 16 23 H 0.09 2.81 7.61 -52.49 -0.40 2.41 16 24 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 25 N -0.89 -26.99 13.96 55.43 0.77 -26.21 16 26 Si 0.87 21.02 26.99 -169.99 -4.59 16.43 16 27 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 29 H -0.26 -5.92 6.82 56.52 0.39 -5.54 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 32 H 0.07 0.38 6.02 -51.93 -0.31 0.06 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.75 7.97 -52.49 -0.42 0.34 16 37 H 0.08 0.39 8.05 -51.93 -0.42 -0.03 16 38 H 0.09 0.46 6.16 -51.92 -0.32 0.14 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.40 2.84 8.32 -40.82 -0.34 2.50 16 43 H 0.09 1.33 8.13 -51.93 -0.42 0.90 16 44 H 0.09 1.28 8.13 -51.93 -0.42 0.86 16 45 H 0.04 0.80 8.00 -51.93 -0.42 0.38 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -35.42 400.55 -8.65 -44.07 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.50 Total: 1.81 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.16 Total: -4.75 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.52 Total: -33.54 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.96 Total: -30.05 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.59 Total: 16.43 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.42 -8.65 -44.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649875444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.715 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds