Wall clock time and date at job start Tue Mar 31 2020 17:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 119.99803 * 2 1 4 4 C 1.38213 * 119.99512 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00399 * 0.02562 * 4 3 2 6 6 C 1.38211 * 119.99688 * 359.95970 * 5 4 3 7 7 C 1.38214 * 120.00071 * 179.71991 * 2 1 3 8 8 C 1.50701 * 120.00051 * 0.02562 * 7 2 1 9 9 C 1.52995 * 109.47509 * 84.99528 * 8 7 2 10 10 H 1.08999 * 109.47162 * 305.00164 * 9 8 7 11 11 C 1.53004 * 109.47608 * 185.00206 * 9 8 7 12 12 N 1.46501 * 109.47025 * 64.99728 * 9 8 7 13 13 C 1.34774 * 120.00177 * 204.99818 * 12 9 8 14 14 O 1.21280 * 120.00334 * 0.02562 * 13 12 9 15 15 C 1.50706 * 120.00000 * 180.02562 * 13 12 9 16 16 O 1.45195 * 109.47231 * 180.02562 * 15 13 12 17 17 C 1.34230 * 117.00294 * 180.02562 * 16 15 13 18 18 O 1.20828 * 119.99599 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00315 * 179.97438 * 17 16 15 20 20 H 1.09005 * 109.47275 * 59.99816 * 19 17 16 21 21 C 1.52997 * 109.47031 * 299.99920 * 19 17 16 22 22 C 1.50699 * 109.46995 * 179.97438 * 19 17 16 23 23 H 1.07998 * 120.00059 * 35.10701 * 22 19 17 24 24 C 1.37880 * 119.99876 * 215.09976 * 22 19 17 25 25 N 1.31509 * 120.00081 * 184.91470 * 24 22 19 26 26 Si 1.86800 * 119.99953 * 4.91487 * 24 22 19 27 27 H 1.48504 * 109.47039 * 84.82282 * 26 24 22 28 28 H 1.48498 * 109.47006 * 204.82359 * 26 24 22 29 29 H 1.48496 * 109.47335 * 324.82323 * 26 24 22 30 30 H 1.09006 * 109.47033 * 90.00242 * 1 2 3 31 31 H 1.08997 * 109.47272 * 330.00201 * 1 2 3 32 32 H 1.08998 * 109.47407 * 210.00093 * 1 2 3 33 33 H 1.07994 * 120.00072 * 359.97438 * 3 2 1 34 34 H 1.08004 * 119.99760 * 179.97438 * 4 3 2 35 35 H 1.08002 * 119.99615 * 179.97438 * 5 4 3 36 36 H 1.07999 * 119.99749 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.47093 * 204.99894 * 8 7 2 38 38 H 1.09008 * 109.46912 * 324.99677 * 8 7 2 39 39 H 1.09005 * 109.46602 * 60.00033 * 11 9 8 40 40 H 1.08997 * 109.46873 * 180.02562 * 11 9 8 41 41 H 1.08999 * 109.46825 * 300.00165 * 11 9 8 42 42 H 0.97000 * 119.99681 * 25.00587 * 12 9 8 43 43 H 1.09004 * 109.47005 * 300.00076 * 15 13 12 44 44 H 1.08996 * 109.47013 * 60.00034 * 15 13 12 45 45 H 1.08999 * 109.47166 * 55.05710 * 21 19 17 46 46 H 1.09000 * 109.47426 * 175.06230 * 21 19 17 47 47 H 1.08998 * 109.46872 * 295.05787 * 21 19 17 48 48 H 0.96999 * 120.00435 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0008 7 6 2.1981 -1.1969 0.0059 8 6 1.4446 -2.5021 0.0116 9 6 1.0812 -2.8876 -1.4236 10 1 0.5317 -2.0706 -1.8912 11 6 0.2101 -4.1454 -1.4090 12 7 2.3057 -3.1504 -2.1837 13 6 2.3095 -3.0122 -3.5243 14 8 1.2994 -2.6699 -4.1016 15 6 3.5691 -3.2831 -4.3062 16 8 3.3177 -3.0654 -5.7195 17 6 4.3455 -3.2660 -6.5593 18 8 5.4198 -3.6116 -6.1275 19 6 4.1595 -3.0602 -8.0405 20 1 3.8625 -2.0286 -8.2296 21 6 3.0724 -4.0062 -8.5543 22 6 5.4552 -3.3482 -8.7542 23 1 6.1081 -4.1294 -8.3939 24 6 5.8069 -2.6144 -9.8673 25 7 6.8883 -2.9281 -10.5469 26 14 4.7476 -1.1748 -10.4100 27 1 5.1411 0.0418 -9.6547 28 1 4.9399 -0.9389 -11.8635 29 1 3.3196 -1.4827 -10.1433 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 0.8900 0.5138 32 1 -0.3634 -0.8899 0.5138 33 1 1.6583 2.1326 -0.0004 34 1 4.1204 2.1326 0.0001 35 1 5.3517 0.0000 0.0005 36 1 4.1206 -2.1323 0.0013 37 1 2.0694 -3.2804 0.4498 38 1 0.5336 -2.3931 0.6003 39 1 -0.7010 -3.9497 -0.8435 40 1 -0.0484 -4.4202 -2.4316 41 1 0.7596 -4.9624 -0.9414 42 1 3.1137 -3.4239 -1.7220 43 1 4.3575 -2.6097 -3.9698 44 1 3.8806 -4.3154 -4.1469 45 1 2.1594 -3.8578 -7.9777 46 1 2.8761 -3.7972 -9.6059 47 1 3.4073 -5.0378 -8.4454 48 1 7.1360 -2.4117 -11.3297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649875444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:54 Heat of formation + Delta-G solvation = -135.521398 kcal Electronic energy + Delta-G solvation = -28454.979806 eV Core-core repulsion = 24473.501245 eV Total energy + Delta-G solvation = -3981.478561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.67091 -40.97670 -40.14947 -37.58819 -36.93545 -35.82433 -34.12143 -33.48608 -33.03541 -31.80532 -29.40601 -28.21121 -27.31530 -27.02310 -25.02802 -23.29138 -22.70953 -21.70164 -21.50258 -21.29580 -19.32469 -18.55669 -18.22690 -17.67017 -17.41325 -17.31336 -16.89128 -16.28579 -16.09386 -15.96867 -15.83744 -15.02007 -14.88001 -14.69584 -14.55782 -14.47753 -14.02711 -13.95755 -13.83142 -13.73009 -13.37319 -13.28565 -13.06952 -13.03481 -12.99600 -12.79932 -12.67147 -12.65626 -12.28059 -11.98338 -11.82007 -11.80869 -11.78919 -11.62016 -11.36778 -11.18152 -10.93762 -10.79647 -10.20132 -9.68059 -9.44348 -8.34625 -6.43446 0.45248 0.49925 1.28125 1.32936 1.37533 1.41792 1.45778 1.49143 2.30607 2.39794 2.84197 3.02981 3.57466 3.75545 3.90556 3.97596 4.01425 4.03328 4.09397 4.14434 4.17225 4.30804 4.32403 4.40525 4.42112 4.55975 4.65100 4.73492 4.76927 4.80277 4.80989 4.85805 4.94477 4.99548 5.03977 5.05761 5.20455 5.28183 5.33040 5.37214 5.44531 5.44941 5.47146 5.60534 5.64727 5.77281 6.16164 6.18197 6.40460 6.65114 6.93691 7.12058 7.20830 8.81832 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.002632 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.459433 B =10637.600261 C =11358.900489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.096 4.096 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.140 4.140 6 C -0.120 4.120 7 C -0.093 4.093 8 C -0.081 4.081 9 C 0.149 3.851 10 H 0.068 0.932 11 C -0.161 4.161 12 N -0.703 5.703 13 C 0.524 3.476 14 O -0.560 6.560 15 C 0.034 3.966 16 O -0.348 6.348 17 C 0.471 3.529 18 O -0.530 6.530 19 C 0.019 3.981 20 H 0.076 0.924 21 C -0.128 4.128 22 C -0.516 4.516 23 H 0.037 0.963 24 C 0.021 3.979 25 N -0.938 5.938 26 Si 0.935 3.065 27 H -0.267 1.267 28 H -0.277 1.277 29 H -0.232 1.232 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.415 0.585 43 H 0.108 0.892 44 H 0.114 0.886 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.745 3.936 28.155 32.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.096 4.096 3 C -0.154 4.154 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.138 4.138 7 C -0.093 4.093 8 C -0.118 4.118 9 C 0.046 3.954 10 H 0.086 0.914 11 C -0.219 4.219 12 N -0.357 5.357 13 C 0.309 3.691 14 O -0.437 6.437 15 C -0.043 4.043 16 O -0.265 6.265 17 C 0.316 3.684 18 O -0.419 6.419 19 C -0.001 4.001 20 H 0.094 0.906 21 C -0.186 4.186 22 C -0.553 4.553 23 H 0.055 0.945 24 C -0.178 4.178 25 N -0.577 5.577 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.202 1.202 29 H -0.155 1.155 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.094 0.906 42 H 0.252 0.748 43 H 0.125 0.875 44 H 0.132 0.868 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.053 4.107 27.763 31.847 hybrid contribution 1.010 0.561 -0.387 1.219 sum -14.043 4.668 27.375 31.119 Atomic orbital electron populations 1.20915 0.90159 1.04021 1.02392 1.20094 0.97115 0.92905 0.99529 1.21288 0.94638 0.98249 1.01253 1.21400 0.94692 0.98897 1.00314 1.21414 1.00754 0.92907 1.00680 1.21313 0.93771 0.98799 0.99943 1.19890 0.93898 0.94969 1.00565 1.20975 1.02203 0.94003 0.94645 1.21014 0.84915 0.98201 0.91312 0.91414 1.22170 1.00541 0.97301 1.01869 1.45780 1.15581 1.69464 1.04875 1.20062 0.88635 0.76933 0.83445 1.90718 1.35511 1.47197 1.70321 1.22877 0.96930 1.05175 0.79290 1.86629 1.41134 1.80868 1.17835 1.24916 0.80956 0.71893 0.90671 1.90530 1.28453 1.44078 1.78794 1.19162 0.97603 0.99646 0.83649 0.90590 1.21827 0.96393 0.98814 1.01559 1.20788 1.03964 1.19437 1.11152 0.94456 1.25894 0.96283 0.99904 0.95719 1.70012 1.26839 1.41700 1.19140 0.85922 0.81167 0.79210 0.78029 1.19181 1.20222 1.15492 0.91800 0.90799 0.89565 0.85316 0.85267 0.85102 0.84234 0.88079 0.87094 0.89456 0.94440 0.90601 0.74826 0.87457 0.86827 0.91642 0.91617 0.93328 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.41 71.24 0.67 -0.75 16 2 C -0.10 -1.56 5.88 -19.87 -0.12 -1.68 16 3 C -0.14 -2.35 9.70 22.27 0.22 -2.14 16 4 C -0.14 -2.34 10.05 22.27 0.22 -2.12 16 5 C -0.14 -2.32 10.05 22.27 0.22 -2.09 16 6 C -0.12 -1.76 9.33 22.27 0.21 -1.56 16 7 C -0.09 -1.35 4.89 -19.87 -0.10 -1.44 16 8 C -0.08 -0.75 4.39 29.85 0.13 -0.62 16 9 C 0.15 2.21 2.56 44.99 0.12 2.32 16 10 H 0.07 1.39 7.37 -2.39 -0.02 1.37 16 11 C -0.16 -2.07 9.48 71.98 0.68 -1.39 16 12 N -0.70 -12.14 4.66 -442.53 -2.06 -14.20 16 13 C 0.52 14.26 7.87 87.66 0.69 14.95 16 14 O -0.56 -20.16 16.16 15.77 0.25 -19.90 16 15 C 0.03 1.01 5.94 71.24 0.42 1.43 16 16 O -0.35 -13.78 9.56 -45.06 -0.43 -14.21 16 17 C 0.47 21.74 7.25 71.23 0.52 22.26 16 18 O -0.53 -26.98 15.52 21.96 0.34 -26.64 16 19 C 0.02 0.92 2.40 -12.29 -0.03 0.89 16 20 H 0.08 3.51 5.29 -2.38 -0.01 3.50 16 21 C -0.13 -5.30 9.14 71.98 0.66 -4.65 16 22 C -0.52 -30.22 8.36 25.60 0.21 -30.01 16 23 H 0.04 2.50 7.61 -2.91 -0.02 2.48 16 24 C 0.02 1.20 5.47 84.66 0.46 1.66 16 25 N -0.94 -58.51 13.96 21.45 0.30 -58.21 16 26 Si 0.93 42.69 26.99 68.60 1.85 44.54 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 29 H -0.23 -9.51 6.82 99.48 0.68 -8.83 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 32 H 0.09 0.71 6.02 -2.39 -0.01 0.69 16 33 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.14 1.35 7.97 -2.91 -0.02 1.33 16 37 H 0.10 0.54 8.05 -2.39 -0.02 0.52 16 38 H 0.11 0.68 6.16 -2.38 -0.01 0.66 16 39 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.41 4.62 8.32 -92.71 -0.77 3.85 16 43 H 0.11 2.87 8.13 -2.38 -0.02 2.85 16 44 H 0.11 2.89 8.13 -2.39 -0.02 2.87 16 45 H 0.06 2.38 8.00 -2.39 -0.02 2.36 16 46 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -79.67 400.55 5.61 -74.06 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.16 Total: 19.51 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 5.19 Total: -4.94 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -1.76 Total: -72.41 kcal Atomic # 8 Polarization: -60.92 SS G_CDS: 0.16 Total: -60.76 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.85 Total: 44.54 kcal Total: -79.67 5.61 -74.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649875444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.464 kcal (2) G-P(sol) polarization free energy of solvation -79.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds