Wall clock time and date at job start Tue Mar 31 2020 19:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99836 * 2 1 4 4 C 1.50697 * 109.47470 * 270.00393 * 3 2 1 5 5 O 1.20758 * 119.99550 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00173 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.47030 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47252 * 299.99975 * 6 4 3 9 9 C 1.53008 * 109.47212 * 59.99948 * 6 4 3 10 10 C 1.34774 * 120.00045 * 180.02562 * 2 1 3 11 11 O 1.21282 * 120.00304 * 179.97438 * 10 2 1 12 12 C 1.50704 * 120.00135 * 359.97438 * 10 2 1 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 2 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47010 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46908 * 119.99967 * 23 21 19 26 26 H 1.48504 * 109.47373 * 240.00300 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.09008 * 109.47099 * 269.99816 * 1 2 3 29 29 H 1.08998 * 109.47367 * 29.99262 * 1 2 3 30 30 H 1.08997 * 109.47036 * 149.99798 * 1 2 3 31 31 H 1.09006 * 109.46954 * 30.00438 * 3 2 1 32 32 H 1.09003 * 109.47215 * 149.99975 * 3 2 1 33 33 H 1.09000 * 109.46677 * 60.00552 * 7 6 4 34 34 H 1.08997 * 109.46737 * 179.97438 * 7 6 4 35 35 H 1.08992 * 109.47268 * 300.00072 * 7 6 4 36 36 H 1.08995 * 109.47095 * 59.99406 * 8 6 4 37 37 H 1.08998 * 109.47215 * 180.02562 * 8 6 4 38 38 H 1.09004 * 109.46717 * 300.00324 * 8 6 4 39 39 H 1.09002 * 109.47263 * 59.99854 * 9 6 4 40 40 H 1.08998 * 109.46815 * 179.97438 * 9 6 4 41 41 H 1.08999 * 109.46392 * 299.99849 * 9 6 4 42 42 H 1.09002 * 109.46571 * 59.99894 * 12 10 2 43 43 H 1.08992 * 109.46782 * 300.00158 * 12 10 2 44 44 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 45 45 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 46 46 H 1.08006 * 120.03715 * 180.31908 * 16 15 14 47 47 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 48 48 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 8 2.0566 1.0241 -2.3386 6 6 3.1898 2.9867 -1.6961 7 6 3.3091 3.1925 -3.2075 8 6 2.4252 4.1600 -1.0799 9 6 4.5885 2.9099 -1.0804 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3854 -2.4723 -0.0005 13 6 2.3647 -3.6177 -0.0005 14 6 2.8133 -4.1431 -1.1989 15 6 3.7115 -5.1945 -1.2031 16 6 4.1685 -5.7190 -0.0099 17 6 3.7157 -5.1976 1.1948 18 8 4.1584 -5.7149 2.3692 19 6 4.9416 -6.8101 2.2990 20 1 5.2566 -7.1880 1.3376 21 6 5.3426 -7.4512 3.4612 22 7 4.9584 -6.9912 4.6323 23 14 6.4271 -8.9691 3.3640 24 1 6.7167 -9.2802 1.9411 25 1 7.7008 -8.7142 4.0837 26 1 5.7264 -10.1191 3.9899 27 6 2.8129 -4.1419 1.1956 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6083 2.0284 0.5139 32 1 3.1499 1.1385 0.5138 33 1 2.3129 3.2472 -3.6464 34 1 3.8449 4.1206 -3.4066 35 1 3.8541 2.3567 -3.6461 36 1 2.3405 4.0131 -0.0032 37 1 2.9611 5.0879 -1.2794 38 1 1.4288 4.2146 -1.5185 39 1 5.1333 2.0740 -1.5193 40 1 5.1247 3.8376 -1.2799 41 1 4.5037 2.7631 -0.0036 42 1 0.7584 -2.5298 -0.8903 43 1 0.7591 -2.5302 0.8896 44 1 2.4613 -3.7313 -2.1333 45 1 4.0596 -5.6028 -2.1403 46 1 4.8740 -6.5368 -0.0137 47 1 5.2387 -7.4400 5.4453 48 1 2.4617 -3.7317 2.1309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650222432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:46 Heat of formation + Delta-G solvation = -77.882231 kcal Electronic energy + Delta-G solvation = -28451.477688 eV Core-core repulsion = 24472.498549 eV Total energy + Delta-G solvation = -3978.979139 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.68917 -39.47976 -38.65976 -36.46540 -36.03553 -35.38867 -32.38870 -32.01053 -29.80440 -29.02472 -27.74654 -27.43875 -27.13962 -26.04769 -25.14450 -23.10646 -21.57722 -20.94089 -19.38064 -18.65545 -17.56413 -17.10206 -16.91842 -16.71994 -16.28042 -15.47346 -15.21744 -14.96540 -14.78007 -14.33465 -14.26443 -13.99782 -13.96026 -13.61526 -13.44914 -13.22785 -13.04656 -12.72962 -12.67398 -12.56603 -12.49509 -12.40460 -12.34342 -12.11552 -11.91524 -11.79143 -11.47745 -11.30744 -11.25869 -11.21895 -10.77937 -10.68383 -10.53823 -10.37851 -10.03814 -9.68818 -9.26089 -8.77559 -8.68528 -7.98248 -7.13533 -6.37937 -3.96604 1.75747 2.15467 2.47478 2.71478 2.89466 3.17043 3.18018 3.23688 3.74592 4.02390 4.33149 4.42183 4.52387 4.58742 4.74687 4.86680 4.95747 5.05981 5.09774 5.16804 5.17340 5.23407 5.23760 5.26984 5.36330 5.40107 5.44959 5.46688 5.50583 5.56061 5.57240 5.73047 5.76752 5.82866 5.89418 5.91503 6.02804 6.24120 6.27482 6.42027 6.73568 6.99993 7.15370 7.24688 7.30710 7.35595 7.45609 7.51702 7.91148 8.07705 8.26664 9.08205 9.79941 10.80636 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.002310 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.851530 B =12120.287442 C =12294.062338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.616 5.616 3 C 0.065 3.935 4 C 0.349 3.651 5 O -0.437 6.437 6 C -0.115 4.115 7 C -0.133 4.133 8 C -0.138 4.138 9 C -0.140 4.140 10 C 0.520 3.480 11 O -0.516 6.516 12 C -0.090 4.090 13 C -0.034 4.034 14 C -0.194 4.194 15 C -0.075 4.075 16 C -0.230 4.230 17 C 0.154 3.846 18 O -0.181 6.181 19 C -0.389 4.389 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.174 4.174 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.107 0.893 46 H 0.126 0.874 47 H 0.268 0.732 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.045 21.227 -10.466 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.351 5.351 3 C -0.059 4.059 4 C 0.221 3.779 5 O -0.308 6.308 6 C -0.116 4.116 7 C -0.190 4.190 8 C -0.196 4.196 9 C -0.198 4.198 10 C 0.309 3.691 11 O -0.390 6.390 12 C -0.130 4.130 13 C -0.034 4.034 14 C -0.213 4.213 15 C -0.093 4.093 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.085 6.085 19 C -0.465 4.465 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.501 5.501 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.193 4.193 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.144 0.856 47 H 0.078 0.922 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.599 20.829 -10.473 24.849 hybrid contribution 0.540 -0.625 -0.064 0.828 sum -8.059 20.204 -10.536 24.170 Atomic orbital electron populations 1.21807 0.79075 1.03494 1.01808 1.47619 1.07006 1.04993 1.75528 1.21872 1.00583 0.86987 0.96427 1.25167 0.75696 0.85681 0.91374 1.90381 1.40685 1.52348 1.47379 1.21202 0.97289 0.94834 0.98321 1.21706 1.02450 1.01989 0.92885 1.21847 1.00034 0.96880 1.00807 1.21855 0.93836 1.02994 1.01092 1.20808 0.88251 0.84894 0.75144 1.90740 1.13886 1.86916 1.47468 1.20605 0.97815 0.90176 1.04389 1.18677 0.96989 0.94617 0.93138 1.20369 1.03935 1.00930 0.96103 1.20676 0.96172 0.95670 0.96814 1.21174 1.06376 1.05281 0.92122 1.19267 0.91621 0.92412 0.86568 1.83975 1.58956 1.40813 1.24726 1.21364 1.27221 1.03297 0.94668 0.89107 1.25267 0.98108 0.99004 0.94215 1.70049 1.43138 1.39516 0.97393 0.85660 0.79075 0.79988 0.78768 1.19138 1.20211 1.20200 1.19930 1.02275 0.99986 0.97117 0.92205 0.91482 0.90463 0.87355 0.86379 0.92251 0.91994 0.92018 0.91727 0.91263 0.92267 0.91827 0.91363 0.91617 0.88316 0.88227 0.87967 0.87498 0.85623 0.92202 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.24 59.85 0.61 1.25 16 2 N -0.62 -7.24 2.36 -182.95 -0.43 -7.67 16 3 C 0.07 0.64 5.16 -5.19 -0.03 0.62 16 4 C 0.35 3.77 6.03 -29.04 -0.18 3.59 16 5 O -0.44 -6.29 16.05 6.00 0.10 -6.20 16 6 C -0.11 -0.91 0.87 -155.66 -0.14 -1.05 16 7 C -0.13 -1.11 7.76 37.16 0.29 -0.82 16 8 C -0.14 -0.72 8.26 37.16 0.31 -0.41 16 9 C -0.14 -1.07 8.25 37.16 0.31 -0.77 16 10 C 0.52 8.24 7.67 -10.98 -0.08 8.15 16 11 O -0.52 -10.48 15.61 5.56 0.09 -10.39 16 12 C -0.09 -1.32 4.38 -29.03 -0.13 -1.44 16 13 C -0.03 -0.65 4.37 -104.65 -0.46 -1.11 16 14 C -0.19 -3.76 9.70 -39.53 -0.38 -4.15 16 15 C -0.08 -1.52 10.04 -39.61 -0.40 -1.92 16 16 C -0.23 -5.38 9.17 -39.40 -0.36 -5.74 16 17 C 0.15 3.97 6.65 -39.11 -0.26 3.71 16 18 O -0.18 -5.38 9.76 0.05 0.00 -5.38 16 19 C -0.39 -11.27 9.49 30.89 0.29 -10.97 16 20 H 0.09 2.45 5.21 -52.49 -0.27 2.18 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 22 N -0.87 -26.01 13.67 55.48 0.76 -25.25 16 23 Si 0.94 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 C -0.17 -3.93 9.65 -39.39 -0.38 -4.31 16 28 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.08 0.56 6.44 -51.93 -0.33 0.23 16 31 H 0.11 0.65 7.31 -51.93 -0.38 0.27 16 32 H 0.12 1.29 6.66 -51.93 -0.35 0.94 16 33 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.06 0.26 7.28 -51.93 -0.38 -0.12 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.45 7.28 -51.93 -0.38 0.08 16 42 H 0.10 1.19 7.34 -51.93 -0.38 0.81 16 43 H 0.10 1.22 8.05 -51.93 -0.42 0.80 16 44 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 46 H 0.13 2.91 5.64 -52.48 -0.30 2.61 16 47 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 398.33 15.07 6.00 6.00 Total: -1.00 -37.16 398.33 -6.97 -44.14 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.39 Total: 3.04 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -1.08 Total: -14.40 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.33 Total: -32.92 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.18 Total: -21.97 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.16 -6.97 -44.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650222432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.745 kcal (2) G-P(sol) polarization free energy of solvation -37.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds