Wall clock time and date at job start Tue Mar 31 2020 19:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99836 * 2 1 4 4 C 1.50697 * 109.47470 * 270.00393 * 3 2 1 5 5 O 1.20758 * 119.99550 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00173 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.47030 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47252 * 299.99975 * 6 4 3 9 9 C 1.53008 * 109.47212 * 59.99948 * 6 4 3 10 10 C 1.34774 * 120.00045 * 180.02562 * 2 1 3 11 11 O 1.21282 * 120.00304 * 179.97438 * 10 2 1 12 12 C 1.50704 * 120.00135 * 359.97438 * 10 2 1 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 2 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47010 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46908 * 119.99967 * 23 21 19 26 26 H 1.48504 * 109.47373 * 240.00300 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.09008 * 109.47099 * 269.99816 * 1 2 3 29 29 H 1.08998 * 109.47367 * 29.99262 * 1 2 3 30 30 H 1.08997 * 109.47036 * 149.99798 * 1 2 3 31 31 H 1.09006 * 109.46954 * 30.00438 * 3 2 1 32 32 H 1.09003 * 109.47215 * 149.99975 * 3 2 1 33 33 H 1.09000 * 109.46677 * 60.00552 * 7 6 4 34 34 H 1.08997 * 109.46737 * 179.97438 * 7 6 4 35 35 H 1.08992 * 109.47268 * 300.00072 * 7 6 4 36 36 H 1.08995 * 109.47095 * 59.99406 * 8 6 4 37 37 H 1.08998 * 109.47215 * 180.02562 * 8 6 4 38 38 H 1.09004 * 109.46717 * 300.00324 * 8 6 4 39 39 H 1.09002 * 109.47263 * 59.99854 * 9 6 4 40 40 H 1.08998 * 109.46815 * 179.97438 * 9 6 4 41 41 H 1.08999 * 109.46392 * 299.99849 * 9 6 4 42 42 H 1.09002 * 109.46571 * 59.99894 * 12 10 2 43 43 H 1.08992 * 109.46782 * 300.00158 * 12 10 2 44 44 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 45 45 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 46 46 H 1.08006 * 120.03715 * 180.31908 * 16 15 14 47 47 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 48 48 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 8 2.0566 1.0241 -2.3386 6 6 3.1898 2.9867 -1.6961 7 6 3.3091 3.1925 -3.2075 8 6 2.4252 4.1600 -1.0799 9 6 4.5885 2.9099 -1.0804 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3854 -2.4723 -0.0005 13 6 2.3647 -3.6177 -0.0005 14 6 2.8133 -4.1431 -1.1989 15 6 3.7115 -5.1945 -1.2031 16 6 4.1685 -5.7190 -0.0099 17 6 3.7157 -5.1976 1.1948 18 8 4.1584 -5.7149 2.3692 19 6 4.9416 -6.8101 2.2990 20 1 5.2566 -7.1880 1.3376 21 6 5.3426 -7.4512 3.4612 22 7 4.9584 -6.9912 4.6323 23 14 6.4271 -8.9691 3.3640 24 1 6.7167 -9.2802 1.9411 25 1 7.7008 -8.7142 4.0837 26 1 5.7264 -10.1191 3.9899 27 6 2.8129 -4.1419 1.1956 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6083 2.0284 0.5139 32 1 3.1499 1.1385 0.5138 33 1 2.3129 3.2472 -3.6464 34 1 3.8449 4.1206 -3.4066 35 1 3.8541 2.3567 -3.6461 36 1 2.3405 4.0131 -0.0032 37 1 2.9611 5.0879 -1.2794 38 1 1.4288 4.2146 -1.5185 39 1 5.1333 2.0740 -1.5193 40 1 5.1247 3.8376 -1.2799 41 1 4.5037 2.7631 -0.0036 42 1 0.7584 -2.5298 -0.8903 43 1 0.7591 -2.5302 0.8896 44 1 2.4613 -3.7313 -2.1333 45 1 4.0596 -5.6028 -2.1403 46 1 4.8740 -6.5368 -0.0137 47 1 5.2387 -7.4400 5.4453 48 1 2.4617 -3.7317 2.1309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650222432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:45 Heat of formation + Delta-G solvation = -101.298242 kcal Electronic energy + Delta-G solvation = -28452.493082 eV Core-core repulsion = 24472.498549 eV Total energy + Delta-G solvation = -3979.994534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.65996 -40.87293 -40.15797 -38.23262 -36.77037 -36.43978 -34.35566 -33.58053 -31.07264 -30.48893 -28.49924 -28.23267 -27.99164 -27.35780 -26.83638 -24.01336 -23.27517 -22.57075 -20.54262 -19.48544 -19.40970 -18.75873 -18.17284 -17.51908 -17.30175 -16.81624 -16.55077 -16.20091 -16.05384 -16.01889 -15.52267 -15.39907 -15.04778 -14.70404 -14.65739 -14.36853 -14.31224 -14.03395 -13.87668 -13.60402 -13.32681 -13.26967 -13.13967 -13.03924 -12.98066 -12.85850 -12.83429 -12.57043 -12.49710 -12.34150 -12.25836 -12.08998 -11.91460 -11.84669 -11.21866 -11.04329 -10.83863 -10.78225 -9.66449 -9.58752 -9.00389 -8.47625 -6.16059 0.49017 0.72582 0.93551 1.33860 1.42491 1.52627 1.57109 1.93604 2.17244 2.81166 2.99197 3.14639 3.41015 3.67151 3.70993 3.84034 3.92182 3.98353 4.06709 4.21773 4.25173 4.29932 4.37294 4.41752 4.46257 4.54828 4.56113 4.66785 4.70516 4.71917 4.75929 4.81388 4.93101 4.93665 4.94552 5.01464 5.03596 5.12234 5.19584 5.25817 5.28117 5.35124 5.45461 5.62191 5.70079 5.72865 6.02109 6.16655 6.28817 6.48854 6.96955 7.13793 7.77785 8.76140 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.002310 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.851530 B =12120.287442 C =12294.062338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.057 3.943 4 C 0.349 3.651 5 O -0.480 6.480 6 C -0.113 4.113 7 C -0.132 4.132 8 C -0.135 4.135 9 C -0.140 4.140 10 C 0.514 3.486 11 O -0.576 6.576 12 C -0.089 4.089 13 C -0.026 4.026 14 C -0.184 4.184 15 C -0.073 4.073 16 C -0.245 4.245 17 C 0.114 3.886 18 O -0.232 6.232 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.020 2.980 24 H -0.253 1.253 25 H -0.268 1.268 26 H -0.265 1.265 27 C -0.189 4.189 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.105 0.895 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.035 0.965 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.137 0.863 45 H 0.144 0.856 46 H 0.119 0.881 47 H 0.273 0.727 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.537 23.023 -12.115 28.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.342 5.342 3 C -0.066 4.066 4 C 0.225 3.775 5 O -0.354 6.354 6 C -0.114 4.114 7 C -0.189 4.189 8 C -0.192 4.192 9 C -0.197 4.197 10 C 0.303 3.697 11 O -0.455 6.455 12 C -0.128 4.128 13 C -0.026 4.026 14 C -0.203 4.203 15 C -0.091 4.091 16 C -0.265 4.265 17 C 0.064 3.936 18 O -0.139 6.139 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.839 3.161 24 H -0.176 1.176 25 H -0.193 1.193 26 H -0.190 1.190 27 C -0.208 4.208 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.171 0.829 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.151 0.849 43 H 0.143 0.857 44 H 0.155 0.845 45 H 0.161 0.839 46 H 0.137 0.863 47 H 0.082 0.918 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.160 22.691 -12.160 27.676 hybrid contribution 0.832 -0.928 0.244 1.270 sum -9.328 21.764 -11.916 26.508 Atomic orbital electron populations 1.22149 0.76361 1.04889 1.03702 1.47690 1.08741 1.04442 1.73361 1.22155 1.00870 0.87235 0.96358 1.25654 0.74607 0.86106 0.91176 1.90366 1.42769 1.53757 1.48484 1.21239 0.97332 0.94613 0.98239 1.21707 1.02096 1.01955 0.93187 1.21865 0.99869 0.95870 1.01572 1.21874 0.93642 1.02917 1.01304 1.20969 0.87625 0.86313 0.74777 1.90723 1.16229 1.87852 1.50729 1.20709 0.96947 0.87776 1.07341 1.19170 0.96567 0.95048 0.91834 1.20913 1.02250 0.99624 0.97482 1.21094 0.95574 0.95453 0.96990 1.21284 1.06848 1.05650 0.92677 1.19842 0.93268 0.93868 0.86585 1.83936 1.60886 1.42108 1.26965 1.21860 1.27806 1.03791 0.95558 0.88317 1.26605 0.99529 1.02521 0.93415 1.70189 1.45529 1.41836 0.98392 0.84516 0.76833 0.75192 0.79539 1.17650 1.19301 1.19011 1.20181 1.02343 0.99679 0.98592 0.89968 0.89646 0.89700 0.82868 0.87665 0.92647 0.89867 0.94587 0.90106 0.89805 0.91879 0.94599 0.89283 0.90880 0.84882 0.85681 0.84518 0.83866 0.86294 0.91803 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 10.24 127.77 1.31 2.14 16 2 N -0.61 -12.91 2.36 -851.12 -2.01 -14.92 16 3 C 0.06 1.01 5.16 85.63 0.44 1.45 16 4 C 0.35 7.09 6.03 29.10 0.18 7.27 16 5 O -0.48 -13.48 16.05 -1.44 -0.02 -13.50 16 6 C -0.11 -1.60 0.87 -52.93 -0.05 -1.65 16 7 C -0.13 -2.08 7.76 71.98 0.56 -1.52 16 8 C -0.13 -0.95 8.26 71.98 0.59 -0.36 16 9 C -0.14 -1.99 8.25 71.98 0.59 -1.40 16 10 C 0.51 15.58 7.67 87.66 0.67 16.26 16 11 O -0.58 -23.62 15.61 -3.04 -0.05 -23.67 16 12 C -0.09 -2.37 4.38 29.10 0.13 -2.24 16 13 C -0.03 -0.97 4.37 -19.88 -0.09 -1.05 16 14 C -0.18 -6.73 9.70 22.30 0.22 -6.51 16 15 C -0.07 -2.86 10.04 22.25 0.22 -2.64 16 16 C -0.25 -11.76 9.17 22.39 0.21 -11.56 16 17 C 0.11 6.18 6.65 22.58 0.15 6.33 16 18 O -0.23 -14.75 9.76 -22.74 -0.22 -14.97 16 19 C -0.41 -25.27 9.49 67.92 0.64 -24.62 16 20 H 0.10 5.59 5.21 -2.91 -0.02 5.58 16 21 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 22 N -0.92 -58.10 13.67 21.61 0.30 -57.81 16 23 Si 1.02 44.42 29.55 68.60 2.03 46.44 16 24 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 C -0.19 -8.81 9.65 22.39 0.22 -8.59 16 28 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.08 0.74 8.07 -2.39 -0.02 0.72 16 30 H 0.08 0.90 6.44 -2.39 -0.02 0.88 16 31 H 0.15 1.25 7.31 -2.38 -0.02 1.23 16 32 H 0.11 2.22 6.66 -2.39 -0.02 2.21 16 33 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 35 H 0.03 0.73 8.10 -2.39 -0.02 0.71 16 36 H 0.08 0.32 7.28 -2.39 -0.02 0.31 16 37 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 39 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.92 7.28 -2.39 -0.02 0.90 16 42 H 0.13 2.65 7.34 -2.39 -0.02 2.64 16 43 H 0.13 2.71 8.05 -2.39 -0.02 2.69 16 44 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 45 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 46 H 0.12 5.73 5.64 -2.91 -0.02 5.71 16 47 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 48 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -88.95 398.33 7.43 -81.52 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.95 Total: 26.52 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 6.46 Total: -29.61 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -1.71 Total: -72.73 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -0.29 Total: -52.14 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -88.95 7.43 -81.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650222432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.780 kcal (2) G-P(sol) polarization free energy of solvation -88.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds