Wall clock time and date at job start Tue Mar 31 2020 17:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46251 * 2 1 4 4 N 1.46506 * 109.47010 * 60.02943 * 3 2 1 5 5 C 1.34777 * 119.99806 * 179.72853 * 4 3 2 6 6 O 1.21345 * 120.00107 * 0.26842 * 5 4 3 7 7 C 1.49447 * 119.99652 * 180.27473 * 5 4 3 8 8 O 1.21345 * 120.00333 * 359.97438 * 7 5 4 9 9 N 1.34778 * 119.99720 * 179.97438 * 7 5 4 10 10 C 1.46497 * 120.00062 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.47312 * 180.02562 * 10 9 7 12 12 F 1.39895 * 109.47282 * 300.00348 * 11 10 9 13 13 F 1.39901 * 109.46849 * 60.00573 * 11 10 9 14 14 C 1.53039 * 109.45021 * 119.96706 * 2 1 3 15 15 C 1.53194 * 109.31386 * 58.64778 * 14 2 1 16 16 N 1.46925 * 108.77707 * 54.63515 * 15 14 2 17 17 C 1.36935 * 120.63227 * 126.41254 * 16 15 14 18 18 H 1.08000 * 120.00045 * 207.65692 * 17 16 15 19 19 C 1.38807 * 119.99791 * 27.66369 * 17 16 15 20 20 N 1.31621 * 120.00424 * 17.37542 * 19 17 16 21 21 Si 1.86806 * 119.99910 * 197.37585 * 19 17 16 22 22 H 1.48499 * 109.46916 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47085 * 119.99644 * 21 19 17 24 24 H 1.48500 * 109.46792 * 239.99733 * 21 19 17 25 25 C 1.46930 * 118.73652 * 306.39281 * 16 15 14 26 26 C 1.53038 * 109.45965 * 240.02711 * 2 1 3 27 27 H 1.08996 * 109.47030 * 59.99661 * 1 2 3 28 28 H 1.09000 * 109.47578 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46976 * 300.00265 * 1 2 3 30 30 H 1.09001 * 109.46997 * 300.02917 * 3 2 1 31 31 H 1.08997 * 109.47102 * 180.02562 * 3 2 1 32 32 H 0.96994 * 119.99936 * 359.97438 * 4 3 2 33 33 H 0.96994 * 120.00135 * 0.02562 * 9 7 5 34 34 H 1.09002 * 109.47119 * 300.00314 * 10 9 7 35 35 H 1.09001 * 109.47092 * 59.99991 * 10 9 7 36 36 H 1.09004 * 109.46882 * 179.97438 * 11 10 9 37 37 H 1.08996 * 109.50008 * 178.59421 * 14 2 1 38 38 H 1.08998 * 109.49697 * 298.69646 * 14 2 1 39 39 H 1.09005 * 109.58390 * 294.84461 * 15 14 2 40 40 H 1.08998 * 109.58578 * 174.42352 * 15 14 2 41 41 H 0.97001 * 120.00341 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.58989 * 293.82028 * 25 16 15 43 43 H 1.08996 * 109.70146 * 173.46159 * 25 16 15 44 44 H 1.08999 * 109.49674 * 61.30818 * 26 2 1 45 45 H 1.08999 * 109.50309 * 181.40547 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5519 2.1329 1.1966 5 6 1.8819 3.4217 1.4127 6 8 2.5791 4.0116 0.6137 7 6 1.3892 4.1240 2.6364 8 8 0.6917 3.5342 3.4352 9 7 1.7197 5.4126 2.8528 10 6 1.2363 6.1013 4.0520 11 6 1.7507 7.5423 4.0548 12 9 3.1496 7.5381 4.0514 13 9 1.2835 8.2064 2.9156 14 6 2.0396 -0.7208 1.2501 15 6 1.4990 -2.1541 1.2643 16 7 1.8619 -2.8090 0.0001 17 6 2.5253 -4.0069 0.0002 18 1 3.1669 -4.2690 -0.8281 19 6 2.3730 -4.8845 1.0649 20 7 1.3596 -4.7448 1.8932 21 14 3.6062 -6.2638 1.3221 22 1 4.6443 -6.2037 0.2620 23 1 4.2486 -6.1118 2.6524 24 1 2.9064 -7.5720 1.2569 25 6 1.4992 -2.1542 -1.2642 26 6 2.0398 -0.7209 -1.2500 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6759 1.9565 -0.8897 31 1 3.1297 1.4427 -0.0005 32 1 0.9943 1.6614 1.8350 33 1 2.2769 5.8842 2.2141 34 1 0.1463 6.1050 4.0544 35 1 1.5999 5.5836 4.9397 36 1 1.3906 8.0548 4.9470 37 1 3.1292 -0.7432 1.2385 38 1 1.6955 -0.1934 2.1398 39 1 0.4140 -2.1344 1.3674 40 1 1.9375 -2.7018 2.0985 41 1 1.2534 -5.3578 2.6374 42 1 0.4143 -2.1345 -1.3674 43 1 1.9359 -2.7012 -2.0998 44 1 1.6959 -0.1936 -2.1398 45 1 3.1295 -0.7432 -1.2382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699860405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:37 Heat of formation + Delta-G solvation = -157.493920 kcal Electronic energy + Delta-G solvation = -29161.128414 eV Core-core repulsion = 24656.760274 eV Total energy + Delta-G solvation = -4504.368140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.55005 -47.53962 -40.86050 -39.24432 -38.24808 -35.82727 -34.99770 -33.17489 -30.93891 -30.36500 -29.94590 -27.40299 -27.04147 -25.11171 -23.87855 -22.81605 -22.22795 -20.91740 -20.57063 -19.16175 -18.13130 -17.98801 -17.96644 -16.87369 -16.80315 -16.40720 -16.18881 -15.61342 -15.20281 -14.98216 -14.81584 -14.43953 -14.21807 -14.00750 -13.89546 -13.86296 -13.54376 -13.47382 -13.14085 -13.02354 -12.84117 -12.66230 -12.07777 -11.90758 -11.73665 -11.48139 -11.30760 -11.19888 -10.79043 -10.71279 -10.57194 -10.22390 -10.19017 -9.86671 -9.82325 -9.81874 -9.52937 -9.43980 -9.18576 -8.45022 -6.65976 -5.79002 -3.20497 1.21188 2.02175 3.02029 3.05452 3.35968 3.36944 3.45253 3.47242 3.57172 3.93989 4.15638 4.30160 4.49850 4.86749 4.87744 4.95930 5.10688 5.19658 5.39891 5.50185 5.61031 5.71186 5.76488 5.83903 6.03798 6.08128 6.11346 6.21193 6.31384 6.47514 6.49432 6.56814 6.62025 6.66502 6.76214 6.85857 6.98405 7.16031 7.36637 7.47883 7.67202 7.80332 7.84110 8.45151 9.21724 9.85420 10.41759 11.29391 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.022597 B = 0.002224 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.830899 B =12586.804130 C =13085.897199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.065 4.065 3 C 0.126 3.874 4 N -0.686 5.686 5 C 0.504 3.496 6 O -0.525 6.525 7 C 0.513 3.487 8 O -0.512 6.512 9 N -0.705 5.705 10 C 0.068 3.932 11 C 0.255 3.745 12 F -0.199 7.199 13 F -0.199 7.199 14 C -0.132 4.132 15 C 0.171 3.829 16 N -0.591 5.591 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.146 3.854 26 C -0.119 4.119 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.414 0.586 33 H 0.418 0.582 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.131 0.869 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.022 0.978 40 H 0.086 0.914 41 H 0.253 0.747 42 H 0.021 0.979 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 23.813 3.597 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.065 4.065 3 C 0.003 3.997 4 N -0.339 5.339 5 C 0.284 3.716 6 O -0.401 6.401 7 C 0.294 3.706 8 O -0.387 6.387 9 N -0.360 5.360 10 C -0.057 4.057 11 C 0.201 3.799 12 F -0.180 7.180 13 F -0.181 7.181 14 C -0.171 4.171 15 C 0.045 3.955 16 N -0.314 5.314 17 C -0.380 4.380 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.019 3.981 26 C -0.159 4.159 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.253 0.747 33 H 0.256 0.744 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.148 0.852 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.826 23.676 3.701 24.033 hybrid contribution 0.668 -0.591 0.232 0.921 sum -1.159 23.086 3.933 23.447 Atomic orbital electron populations 1.21967 0.94522 1.03270 1.00397 1.20723 0.95960 0.91601 0.98224 1.21760 0.99441 0.92604 0.85854 1.45945 1.51312 1.10658 1.25985 1.19851 0.82012 0.83403 0.86360 1.90770 1.37119 1.65960 1.46286 1.20297 0.80986 0.82300 0.87035 1.90799 1.36136 1.65563 1.46170 1.45481 1.53545 1.12061 1.24949 1.22636 1.02301 0.90319 0.90421 1.22239 0.76113 0.93133 0.88443 1.93043 1.30627 1.97309 1.97045 1.93040 1.88146 1.82394 1.54505 1.22278 1.00708 0.99735 0.94413 1.20796 0.96588 0.87713 0.90373 1.44048 1.66811 1.21107 0.99462 1.19223 1.19207 0.93445 1.06110 0.91689 1.25022 0.97154 0.97558 0.99998 1.70038 1.27925 1.38807 1.17946 0.86256 0.81082 0.81868 0.77765 1.20290 1.21611 1.21777 1.20908 0.96447 0.90552 0.90169 1.22000 1.00811 0.98246 0.94853 0.93297 0.90522 0.93531 0.91165 0.90951 0.74745 0.74442 0.87657 0.87606 0.85196 0.92437 0.93512 0.95999 0.89562 0.93724 0.96117 0.92857 0.92842 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 7.54 37.16 0.28 -1.83 16 2 C -0.06 -0.98 0.53 -154.47 -0.08 -1.06 16 3 C 0.13 1.72 4.56 -4.04 -0.02 1.70 16 4 N -0.69 -8.98 4.94 -60.73 -0.30 -9.28 16 5 C 0.50 6.68 7.89 -11.59 -0.09 6.59 16 6 O -0.52 -7.92 16.48 5.50 0.09 -7.83 16 7 C 0.51 6.05 7.89 -11.59 -0.09 5.96 16 8 O -0.51 -6.96 16.48 5.50 0.09 -6.87 16 9 N -0.70 -6.36 5.41 -60.73 -0.33 -6.69 16 10 C 0.07 0.39 5.91 -4.04 -0.02 0.36 16 11 C 0.25 1.14 5.42 37.16 0.20 1.34 16 12 F -0.20 -1.43 17.20 2.25 0.04 -1.39 16 13 F -0.20 -1.39 17.20 2.25 0.04 -1.35 16 14 C -0.13 -2.36 4.75 -26.61 -0.13 -2.49 16 15 C 0.17 3.89 4.84 -3.71 -0.02 3.87 16 16 N -0.59 -14.27 3.00 -172.32 -0.52 -14.78 16 17 C -0.25 -6.74 9.59 -15.06 -0.14 -6.89 16 18 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 19 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 20 N -0.90 -25.85 11.19 55.49 0.62 -25.23 16 21 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.15 2.90 6.04 -3.71 -0.02 2.88 16 26 C -0.12 -1.93 4.91 -26.61 -0.13 -2.06 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.31 4.98 -51.93 -0.26 1.05 16 29 H 0.05 0.63 6.86 -51.93 -0.36 0.27 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.41 5.36 5.63 -40.82 -0.23 5.14 16 33 H 0.42 3.74 7.83 -40.82 -0.32 3.42 16 34 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.13 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.76 6.82 -51.93 -0.35 0.41 16 39 H 0.02 0.52 6.69 -51.93 -0.35 0.17 16 40 H 0.09 2.26 6.04 -51.93 -0.31 1.94 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.02 0.42 6.69 -51.93 -0.35 0.07 16 43 H 0.05 1.06 7.94 -51.93 -0.41 0.64 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -32.07 366.51 -6.42 -38.48 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.29 Total: 4.55 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -0.35 Total: 8.32 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.52 Total: -55.98 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.18 Total: -14.69 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.08 Total: -2.74 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.07 -6.42 -38.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699860405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.011 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds