Wall clock time and date at job start Tue Mar 31 2020 17:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46251 * 2 1 4 4 N 1.46506 * 109.47010 * 60.02943 * 3 2 1 5 5 C 1.34777 * 119.99806 * 179.72853 * 4 3 2 6 6 O 1.21345 * 120.00107 * 0.26842 * 5 4 3 7 7 C 1.49447 * 119.99652 * 180.27473 * 5 4 3 8 8 O 1.21345 * 120.00333 * 359.97438 * 7 5 4 9 9 N 1.34778 * 119.99720 * 179.97438 * 7 5 4 10 10 C 1.46497 * 120.00062 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.47312 * 180.02562 * 10 9 7 12 12 F 1.39895 * 109.47282 * 300.00348 * 11 10 9 13 13 F 1.39901 * 109.46849 * 60.00573 * 11 10 9 14 14 C 1.53039 * 109.45021 * 119.96706 * 2 1 3 15 15 C 1.53194 * 109.31386 * 58.64778 * 14 2 1 16 16 N 1.46925 * 108.77707 * 54.63515 * 15 14 2 17 17 C 1.36935 * 120.63227 * 126.41254 * 16 15 14 18 18 H 1.08000 * 120.00045 * 207.65692 * 17 16 15 19 19 C 1.38807 * 119.99791 * 27.66369 * 17 16 15 20 20 N 1.31621 * 120.00424 * 17.37542 * 19 17 16 21 21 Si 1.86806 * 119.99910 * 197.37585 * 19 17 16 22 22 H 1.48499 * 109.46916 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47085 * 119.99644 * 21 19 17 24 24 H 1.48500 * 109.46792 * 239.99733 * 21 19 17 25 25 C 1.46930 * 118.73652 * 306.39281 * 16 15 14 26 26 C 1.53038 * 109.45965 * 240.02711 * 2 1 3 27 27 H 1.08996 * 109.47030 * 59.99661 * 1 2 3 28 28 H 1.09000 * 109.47578 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46976 * 300.00265 * 1 2 3 30 30 H 1.09001 * 109.46997 * 300.02917 * 3 2 1 31 31 H 1.08997 * 109.47102 * 180.02562 * 3 2 1 32 32 H 0.96994 * 119.99936 * 359.97438 * 4 3 2 33 33 H 0.96994 * 120.00135 * 0.02562 * 9 7 5 34 34 H 1.09002 * 109.47119 * 300.00314 * 10 9 7 35 35 H 1.09001 * 109.47092 * 59.99991 * 10 9 7 36 36 H 1.09004 * 109.46882 * 179.97438 * 11 10 9 37 37 H 1.08996 * 109.50008 * 178.59421 * 14 2 1 38 38 H 1.08998 * 109.49697 * 298.69646 * 14 2 1 39 39 H 1.09005 * 109.58390 * 294.84461 * 15 14 2 40 40 H 1.08998 * 109.58578 * 174.42352 * 15 14 2 41 41 H 0.97001 * 120.00341 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.58989 * 293.82028 * 25 16 15 43 43 H 1.08996 * 109.70146 * 173.46159 * 25 16 15 44 44 H 1.08999 * 109.49674 * 61.30818 * 26 2 1 45 45 H 1.08999 * 109.50309 * 181.40547 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5519 2.1329 1.1966 5 6 1.8819 3.4217 1.4127 6 8 2.5791 4.0116 0.6137 7 6 1.3892 4.1240 2.6364 8 8 0.6917 3.5342 3.4352 9 7 1.7197 5.4126 2.8528 10 6 1.2363 6.1013 4.0520 11 6 1.7507 7.5423 4.0548 12 9 3.1496 7.5381 4.0514 13 9 1.2835 8.2064 2.9156 14 6 2.0396 -0.7208 1.2501 15 6 1.4990 -2.1541 1.2643 16 7 1.8619 -2.8090 0.0001 17 6 2.5253 -4.0069 0.0002 18 1 3.1669 -4.2690 -0.8281 19 6 2.3730 -4.8845 1.0649 20 7 1.3596 -4.7448 1.8932 21 14 3.6062 -6.2638 1.3221 22 1 4.6443 -6.2037 0.2620 23 1 4.2486 -6.1118 2.6524 24 1 2.9064 -7.5720 1.2569 25 6 1.4992 -2.1542 -1.2642 26 6 2.0398 -0.7209 -1.2500 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6759 1.9565 -0.8897 31 1 3.1297 1.4427 -0.0005 32 1 0.9943 1.6614 1.8350 33 1 2.2769 5.8842 2.2141 34 1 0.1463 6.1050 4.0544 35 1 1.5999 5.5836 4.9397 36 1 1.3906 8.0548 4.9470 37 1 3.1292 -0.7432 1.2385 38 1 1.6955 -0.1934 2.1398 39 1 0.4140 -2.1344 1.3674 40 1 1.9375 -2.7018 2.0985 41 1 1.2534 -5.3578 2.6374 42 1 0.4143 -2.1345 -1.3674 43 1 1.9359 -2.7012 -2.0998 44 1 1.6959 -0.1936 -2.1398 45 1 3.1295 -0.7432 -1.2382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699860405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:36 Heat of formation + Delta-G solvation = -180.307229 kcal Electronic energy + Delta-G solvation = -29162.117673 eV Core-core repulsion = 24656.760274 eV Total energy + Delta-G solvation = -4505.357399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.98321 -47.99113 -41.85041 -40.46229 -39.42986 -36.90214 -36.17736 -34.66912 -32.69572 -31.57729 -30.94264 -28.87862 -28.23867 -26.40570 -25.17414 -23.95337 -23.38799 -22.37031 -21.57559 -20.15248 -19.55087 -18.65124 -18.40702 -18.21342 -17.74902 -17.35350 -17.14338 -16.80943 -16.54485 -16.12261 -15.88785 -15.56031 -15.47004 -15.04889 -15.02531 -14.98234 -14.78528 -14.46212 -14.36006 -14.08986 -13.91113 -13.45771 -13.44268 -13.17728 -12.97469 -12.90532 -12.67924 -12.57541 -12.32333 -12.24169 -12.13078 -11.88926 -11.79836 -11.47699 -11.16424 -11.06449 -10.79810 -10.54924 -10.49406 -10.27036 -8.62770 -7.85578 -5.29138 0.24702 1.18506 1.44957 1.47564 1.57363 2.04974 2.48873 2.52109 2.68515 3.28182 3.29255 3.33591 3.55770 3.71246 3.76389 3.84754 3.88763 3.93986 4.39728 4.46017 4.48297 4.52430 4.59927 4.67689 4.74829 4.82973 4.85345 4.90878 4.95870 5.08292 5.10416 5.16797 5.28687 5.32923 5.41459 5.49479 5.56437 5.67859 5.74927 5.85227 6.20007 6.41749 6.57239 6.83792 7.18050 7.91028 8.41229 9.20274 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.022597 B = 0.002224 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.830899 B =12586.804130 C =13085.897199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.056 4.056 3 C 0.136 3.864 4 N -0.685 5.685 5 C 0.504 3.496 6 O -0.544 6.544 7 C 0.515 3.485 8 O -0.534 6.534 9 N -0.696 5.696 10 C 0.061 3.939 11 C 0.255 3.745 12 F -0.215 7.215 13 F -0.215 7.215 14 C -0.119 4.119 15 C 0.179 3.821 16 N -0.610 5.610 17 C -0.258 4.258 18 H 0.064 0.936 19 C -0.052 4.052 20 N -0.934 5.934 21 Si 0.962 3.038 22 H -0.268 1.268 23 H -0.292 1.292 24 H -0.293 1.293 25 C 0.141 3.859 26 C -0.110 4.110 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.416 0.584 33 H 0.419 0.581 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.179 0.821 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.006 0.994 40 H 0.046 0.954 41 H 0.248 0.752 42 H 0.022 0.978 43 H 0.050 0.950 44 H 0.087 0.913 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.655 26.005 3.353 26.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.056 4.056 3 C 0.013 3.987 4 N -0.337 5.337 5 C 0.285 3.715 6 O -0.422 6.422 7 C 0.296 3.704 8 O -0.411 6.411 9 N -0.350 5.350 10 C -0.063 4.063 11 C 0.202 3.798 12 F -0.197 7.197 13 F -0.196 7.196 14 C -0.158 4.158 15 C 0.053 3.947 16 N -0.333 5.333 17 C -0.388 4.388 18 H 0.082 0.918 19 C -0.247 4.247 20 N -0.580 5.580 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.220 1.220 25 C 0.016 3.984 26 C -0.149 4.149 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.254 0.746 33 H 0.256 0.744 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.196 0.804 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.024 0.976 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.675 25.913 3.439 26.194 hybrid contribution 0.593 -1.235 0.280 1.398 sum -1.082 24.679 3.719 24.981 Atomic orbital electron populations 1.21893 0.93732 1.01864 1.02103 1.20594 0.96432 0.92367 0.96220 1.21581 0.99172 0.91206 0.86711 1.45914 1.51208 1.10778 1.25838 1.20112 0.81501 0.83261 0.86636 1.90760 1.38012 1.66363 1.47089 1.20006 0.81017 0.83037 0.86347 1.90795 1.37399 1.66178 1.46680 1.45567 1.52527 1.11191 1.25761 1.22964 1.03165 0.90899 0.89235 1.22703 0.75066 0.92610 0.89433 1.93011 1.32220 1.97338 1.97128 1.93011 1.88241 1.82616 1.55740 1.22067 0.99828 0.97020 0.96899 1.20571 0.95373 0.89925 0.88792 1.44309 1.66930 1.20865 1.01241 1.19529 1.19017 0.94361 1.05902 0.91788 1.25731 0.98784 1.00039 1.00187 1.70183 1.29565 1.39806 1.18456 0.85287 0.79128 0.79010 0.77519 1.19216 1.21877 1.22002 1.21071 0.96628 0.92545 0.88191 1.21877 1.00389 0.95937 0.96733 0.91039 0.93379 0.92466 0.89646 0.91319 0.74591 0.74397 0.86397 0.86635 0.80381 0.93438 0.91944 0.97630 0.93536 0.94249 0.96033 0.93151 0.89452 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 7.54 71.98 0.54 -3.26 16 2 C -0.06 -1.60 0.53 -52.16 -0.03 -1.62 16 3 C 0.14 3.37 4.56 86.38 0.39 3.76 16 4 N -0.68 -16.62 4.94 -464.41 -2.29 -18.91 16 5 C 0.50 12.56 7.89 87.27 0.69 13.25 16 6 O -0.54 -15.53 16.48 -3.23 -0.05 -15.58 16 7 C 0.52 11.40 7.89 87.27 0.69 12.09 16 8 O -0.53 -13.75 16.48 -3.23 -0.05 -13.80 16 9 N -0.70 -11.43 5.41 -464.42 -2.51 -13.94 16 10 C 0.06 0.56 5.91 86.38 0.51 1.07 16 11 C 0.26 1.65 5.42 71.98 0.39 2.04 16 12 F -0.22 -2.70 17.20 44.97 0.77 -1.93 16 13 F -0.21 -2.59 17.20 44.97 0.77 -1.81 16 14 C -0.12 -4.23 4.75 30.67 0.15 -4.08 16 15 C 0.18 8.37 4.84 86.36 0.42 8.79 16 16 N -0.61 -29.90 3.00 -699.09 -2.09 -31.99 16 17 C -0.26 -14.12 9.59 84.03 0.81 -13.31 16 18 H 0.06 3.44 7.89 -2.91 -0.02 3.42 16 19 C -0.05 -2.92 4.91 84.86 0.42 -2.51 16 20 N -0.93 -55.25 11.19 21.65 0.24 -55.00 16 21 Si 0.96 45.19 29.59 68.60 2.03 47.22 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 C 0.14 5.54 6.04 86.36 0.52 6.06 16 26 C -0.11 -3.34 4.91 30.67 0.15 -3.19 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 1.61 4.98 -2.39 -0.01 1.60 16 29 H 0.06 1.44 6.86 -2.38 -0.02 1.42 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.42 10.04 5.63 -92.71 -0.52 9.52 16 33 H 0.42 6.91 7.83 -92.71 -0.73 6.19 16 34 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.18 -0.52 8.14 -2.38 -0.02 -0.54 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.06 2.00 6.82 -2.39 -0.02 1.99 16 39 H 0.01 0.28 6.69 -2.38 -0.02 0.26 16 40 H 0.05 2.53 6.04 -2.39 -0.01 2.52 16 41 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 42 H 0.02 0.85 6.69 -2.39 -0.02 0.84 16 43 H 0.05 1.97 7.94 -2.39 -0.02 1.95 16 44 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -70.96 366.51 2.25 -68.71 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -0.21 Total: 17.97 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 5.65 Total: 19.09 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -6.66 Total: -119.85 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.11 Total: -29.39 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 1.55 Total: -3.74 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -70.96 2.25 -68.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699860405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.600 kcal (2) G-P(sol) polarization free energy of solvation -70.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds