Wall clock time and date at job start Tue Mar 31 2020 17:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 110.35385 * 2 1 4 4 C 1.34779 * 120.00366 * 60.68713 * 3 2 1 5 5 O 1.21275 * 119.99957 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99980 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.46923 * 179.97438 * 6 4 3 8 8 C 1.53008 * 109.47049 * 179.97438 * 7 6 4 9 9 F 1.39895 * 109.46774 * 174.99847 * 8 7 6 10 10 F 1.39896 * 109.46741 * 294.99857 * 8 7 6 11 11 C 1.54599 * 110.30705 * 122.13780 * 2 1 3 12 12 C 1.54934 * 103.08136 * 140.96234 * 11 2 1 13 13 N 1.48536 * 103.22499 * 322.49500 * 12 11 2 14 14 C 1.46902 * 110.99647 * 159.72113 * 13 12 11 15 15 C 1.50707 * 109.46948 * 183.58802 * 14 13 12 16 16 O 1.21290 * 119.99920 * 354.03341 * 15 14 13 17 17 N 1.34776 * 119.99705 * 174.03414 * 15 14 13 18 18 C 1.37095 * 119.99676 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00240 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99853 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00088 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99788 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47079 * 60.00046 * 22 20 18 24 24 H 1.48494 * 109.46939 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46933 * 299.99673 * 22 20 18 26 26 C 1.47897 * 105.81843 * 39.20987 * 13 12 11 27 27 H 1.09007 * 109.47361 * 299.31611 * 1 2 3 28 28 H 1.08998 * 109.46985 * 59.30956 * 1 2 3 29 29 H 1.08991 * 109.47674 * 179.31692 * 1 2 3 30 30 H 0.97002 * 120.00120 * 240.68593 * 3 2 1 31 31 H 1.09003 * 109.46955 * 299.99354 * 6 4 3 32 32 H 1.09001 * 109.47591 * 59.99743 * 6 4 3 33 33 H 1.09003 * 109.46825 * 299.99492 * 7 6 4 34 34 H 1.08997 * 109.47193 * 60.00025 * 7 6 4 35 35 H 1.09002 * 109.46959 * 54.99793 * 8 7 6 36 36 H 1.09002 * 110.72366 * 22.51646 * 11 2 1 37 37 H 1.08996 * 110.72683 * 259.40944 * 11 2 1 38 38 H 1.08996 * 110.66915 * 80.92806 * 12 11 2 39 39 H 1.09003 * 110.66623 * 203.90100 * 12 11 2 40 40 H 1.09007 * 109.47144 * 303.58501 * 14 13 12 41 41 H 1.08998 * 109.47402 * 63.58602 * 14 13 12 42 42 H 0.97001 * 120.00347 * 0.02562 * 17 15 14 43 43 H 0.96994 * 119.99630 * 180.02562 * 21 20 18 44 44 H 1.09010 * 109.91839 * 94.02361 * 26 13 12 45 45 H 1.09005 * 109.91594 * 215.11561 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0395 1.3735 0.0000 4 6 1.7382 2.2041 1.0177 5 8 1.0448 1.8147 1.9333 6 6 2.2619 3.6172 1.0174 7 6 1.7768 4.3412 2.2749 8 6 2.3091 5.7757 2.2749 9 9 1.7738 6.4716 3.3640 10 9 3.7043 5.7553 2.3746 11 6 2.0665 -0.7713 1.2277 12 6 3.2876 -1.5347 0.6561 13 7 2.8367 -1.9273 -0.7036 14 6 3.9829 -2.2307 -1.5710 15 6 3.4922 -2.5385 -2.9624 16 8 2.3019 -2.6145 -3.1827 17 7 4.3762 -2.7292 -3.9618 18 6 3.9299 -3.0096 -5.2273 19 1 2.8700 -3.0774 -5.4235 20 6 4.8412 -3.2068 -6.2576 21 7 6.1308 -3.1248 -6.0188 22 14 4.2330 -3.5882 -7.9822 23 1 3.3816 -2.4715 -8.4651 24 1 5.3952 -3.7530 -8.8917 25 1 3.4388 -4.8428 -7.9607 26 6 2.0698 -0.7742 -1.2227 27 1 -0.3634 0.5032 0.8961 28 1 -0.3633 0.5245 -0.8837 29 1 -0.3634 -1.0275 -0.0123 30 1 2.5939 1.6852 -0.7325 31 1 3.3518 3.6007 1.0048 32 1 1.8963 4.1401 0.1336 33 1 0.6870 4.3577 2.2870 34 1 2.1422 3.8185 3.1589 35 1 2.0181 6.2711 1.3486 36 1 1.3172 -1.4682 1.6031 37 1 2.3761 -0.0806 2.0121 38 1 4.1578 -0.8809 0.5990 39 1 3.5082 -2.4149 1.2601 40 1 4.6517 -1.3705 -1.6036 41 1 4.5194 -3.0933 -1.1758 42 1 5.3281 -2.6687 -3.7855 43 1 6.7669 -3.2621 -6.7381 44 1 2.7221 -0.1290 -1.8114 45 1 1.2418 -1.1258 -1.8383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716843411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:52 Heat of formation + Delta-G solvation = -176.076655 kcal Electronic energy + Delta-G solvation = -28882.256872 eV Core-core repulsion = 24377.082924 eV Total energy + Delta-G solvation = -4505.173948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.31961 -47.33201 -40.63468 -38.94058 -37.61456 -34.73920 -34.15926 -33.87871 -31.66493 -31.19506 -29.66584 -27.42133 -27.33411 -25.46488 -23.97605 -22.97558 -21.58915 -20.71084 -19.61793 -19.16269 -18.06520 -17.90204 -17.85923 -17.17774 -16.61987 -16.06057 -15.95431 -15.72964 -15.40847 -14.78656 -14.52695 -14.29878 -14.11483 -13.97344 -13.76850 -13.67847 -13.45801 -13.39306 -13.04939 -12.90181 -12.56913 -12.44749 -12.26149 -12.06659 -11.85076 -11.71978 -11.55255 -11.30166 -11.27751 -11.24483 -11.05428 -10.95589 -10.71550 -10.48008 -10.25883 -9.86124 -9.53032 -9.20728 -8.50274 -8.07707 -7.99020 -6.46316 -3.87340 2.40062 2.81654 3.16261 3.22622 3.26646 3.48460 3.83319 3.85051 4.01499 4.03171 4.15815 4.24948 4.41761 4.60328 4.65611 4.70783 4.85520 4.95487 5.02161 5.08088 5.20140 5.33364 5.37431 5.43155 5.54199 5.58257 5.68627 5.76415 5.80096 5.85477 5.92196 6.03819 6.09915 6.21963 6.26204 6.39798 6.48915 7.11114 7.14602 7.32900 7.50477 8.00839 8.01390 8.56410 9.13074 9.48951 10.00401 10.71258 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.002207 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.089067 B =12684.676077 C =13449.180513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.159 3.841 3 N -0.719 5.719 4 C 0.517 3.483 5 O -0.535 6.535 6 C -0.145 4.145 7 C -0.155 4.155 8 C 0.261 3.739 9 F -0.206 7.206 10 F -0.206 7.206 11 C -0.119 4.119 12 C 0.030 3.970 13 N -0.489 5.489 14 C 0.036 3.964 15 C 0.441 3.559 16 O -0.579 6.579 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.050 3.950 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.400 0.600 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.092 0.908 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.044 0.956 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.244 15.134 14.621 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.074 3.926 3 N -0.371 5.371 4 C 0.303 3.697 5 O -0.412 6.412 6 C -0.185 4.185 7 C -0.193 4.193 8 C 0.207 3.793 9 F -0.187 7.187 10 F -0.188 7.188 11 C -0.158 4.158 12 C -0.098 4.098 13 N -0.214 5.214 14 C -0.095 4.095 15 C 0.226 3.774 16 O -0.463 6.463 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.079 4.079 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.235 0.765 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.670 14.297 15.014 21.493 hybrid contribution 1.488 0.739 -1.242 2.074 sum -4.182 15.035 13.772 20.814 Atomic orbital electron populations 1.22111 0.93171 1.03054 1.02638 1.21399 0.94778 0.80231 0.96238 1.46336 1.53566 1.12712 1.24476 1.20349 0.80311 0.86998 0.82060 1.90695 1.37819 1.77155 1.35525 1.21609 1.03533 0.93889 0.99480 1.22396 1.04061 0.92570 1.00276 1.21960 0.74812 0.93944 0.88537 1.92994 1.85897 1.81057 1.58775 1.92995 1.31429 1.97377 1.96980 1.22803 0.97664 0.98576 0.96729 1.23338 0.96382 0.98959 0.91120 1.64595 1.19981 1.35735 1.01041 1.22121 0.92376 1.01240 0.93807 1.19720 0.87182 0.84918 0.85595 1.90506 1.15931 1.56401 1.83459 1.41863 1.08422 1.61782 1.07880 1.19644 0.94603 1.44878 0.83805 0.87951 1.25268 0.94927 0.97401 1.00315 1.69601 1.00749 1.49766 1.34158 0.85918 0.77915 0.79228 0.81170 1.19929 1.20968 1.19844 1.23258 0.99828 0.90483 0.94297 0.90842 0.92656 0.91014 0.76504 0.87948 0.88160 0.87853 0.88583 0.87147 0.89848 0.90398 0.94136 0.89887 0.93534 0.88965 0.77494 0.91782 0.93808 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.17 37.16 0.30 -1.58 16 2 C 0.16 1.97 0.96 -130.22 -0.12 1.84 16 3 N -0.72 -7.11 5.15 -46.13 -0.24 -7.34 16 4 C 0.52 5.03 7.03 -10.98 -0.08 4.95 16 5 O -0.53 -6.89 12.85 5.56 0.07 -6.82 16 6 C -0.14 -0.88 5.62 -27.88 -0.16 -1.03 16 7 C -0.15 -1.02 4.73 -26.72 -0.13 -1.14 16 8 C 0.26 1.61 5.29 37.16 0.20 1.80 16 9 F -0.21 -1.77 17.34 2.25 0.04 -1.73 16 10 F -0.21 -1.71 17.02 2.25 0.04 -1.67 16 11 C -0.12 -1.47 5.80 -24.87 -0.14 -1.62 16 12 C 0.03 0.38 6.56 -1.90 -0.01 0.37 16 13 N -0.49 -7.87 5.12 -231.58 -1.19 -9.06 16 14 C 0.04 0.62 5.30 -4.97 -0.03 0.60 16 15 C 0.44 10.01 7.39 -10.98 -0.08 9.93 16 16 O -0.58 -14.98 14.10 5.55 0.08 -14.90 16 17 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 18 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 19 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.03 13.05 55.50 0.72 -23.30 16 22 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.05 0.76 4.86 -2.51 -0.01 0.74 16 27 H 0.07 0.95 6.31 -51.93 -0.33 0.62 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.40 3.25 8.11 -40.82 -0.33 2.92 16 31 H 0.10 0.54 7.94 -51.93 -0.41 0.13 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 1.05 7.86 -51.93 -0.41 0.64 16 37 H 0.08 0.98 6.57 -51.93 -0.34 0.63 16 38 H 0.04 0.49 7.95 -51.93 -0.41 0.07 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.72 8.00 -51.92 -0.42 0.30 16 41 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.39 9.24 7.90 -40.82 -0.32 8.91 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 44 H 0.04 0.66 7.05 -51.92 -0.37 0.30 16 45 H 0.11 1.99 6.59 -51.93 -0.34 1.65 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -32.32 372.45 -7.01 -39.33 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -6.57 Total: 11.09 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -0.50 Total: 7.09 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.76 Total: -53.60 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: 0.15 Total: -21.72 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.41 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.32 -7.01 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716843411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.749 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds