Wall clock time and date at job start Tue Mar 31 2020 17:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 110.35385 * 2 1 4 4 C 1.34779 * 120.00366 * 60.68713 * 3 2 1 5 5 O 1.21275 * 119.99957 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99980 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.46923 * 179.97438 * 6 4 3 8 8 C 1.53008 * 109.47049 * 179.97438 * 7 6 4 9 9 F 1.39895 * 109.46774 * 174.99847 * 8 7 6 10 10 F 1.39896 * 109.46741 * 294.99857 * 8 7 6 11 11 C 1.54599 * 110.30705 * 122.13780 * 2 1 3 12 12 C 1.54934 * 103.08136 * 140.96234 * 11 2 1 13 13 N 1.48536 * 103.22499 * 322.49500 * 12 11 2 14 14 C 1.46902 * 110.99647 * 159.72113 * 13 12 11 15 15 C 1.50707 * 109.46948 * 183.58802 * 14 13 12 16 16 O 1.21290 * 119.99920 * 354.03341 * 15 14 13 17 17 N 1.34776 * 119.99705 * 174.03414 * 15 14 13 18 18 C 1.37095 * 119.99676 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00240 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99853 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00088 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99788 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47079 * 60.00046 * 22 20 18 24 24 H 1.48494 * 109.46939 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46933 * 299.99673 * 22 20 18 26 26 C 1.47897 * 105.81843 * 39.20987 * 13 12 11 27 27 H 1.09007 * 109.47361 * 299.31611 * 1 2 3 28 28 H 1.08998 * 109.46985 * 59.30956 * 1 2 3 29 29 H 1.08991 * 109.47674 * 179.31692 * 1 2 3 30 30 H 0.97002 * 120.00120 * 240.68593 * 3 2 1 31 31 H 1.09003 * 109.46955 * 299.99354 * 6 4 3 32 32 H 1.09001 * 109.47591 * 59.99743 * 6 4 3 33 33 H 1.09003 * 109.46825 * 299.99492 * 7 6 4 34 34 H 1.08997 * 109.47193 * 60.00025 * 7 6 4 35 35 H 1.09002 * 109.46959 * 54.99793 * 8 7 6 36 36 H 1.09002 * 110.72366 * 22.51646 * 11 2 1 37 37 H 1.08996 * 110.72683 * 259.40944 * 11 2 1 38 38 H 1.08996 * 110.66915 * 80.92806 * 12 11 2 39 39 H 1.09003 * 110.66623 * 203.90100 * 12 11 2 40 40 H 1.09007 * 109.47144 * 303.58501 * 14 13 12 41 41 H 1.08998 * 109.47402 * 63.58602 * 14 13 12 42 42 H 0.97001 * 120.00347 * 0.02562 * 17 15 14 43 43 H 0.96994 * 119.99630 * 180.02562 * 21 20 18 44 44 H 1.09010 * 109.91839 * 94.02361 * 26 13 12 45 45 H 1.09005 * 109.91594 * 215.11561 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0395 1.3735 0.0000 4 6 1.7382 2.2041 1.0177 5 8 1.0448 1.8147 1.9333 6 6 2.2619 3.6172 1.0174 7 6 1.7768 4.3412 2.2749 8 6 2.3091 5.7757 2.2749 9 9 1.7738 6.4716 3.3640 10 9 3.7043 5.7553 2.3746 11 6 2.0665 -0.7713 1.2277 12 6 3.2876 -1.5347 0.6561 13 7 2.8367 -1.9273 -0.7036 14 6 3.9829 -2.2307 -1.5710 15 6 3.4922 -2.5385 -2.9624 16 8 2.3019 -2.6145 -3.1827 17 7 4.3762 -2.7292 -3.9618 18 6 3.9299 -3.0096 -5.2273 19 1 2.8700 -3.0774 -5.4235 20 6 4.8412 -3.2068 -6.2576 21 7 6.1308 -3.1248 -6.0188 22 14 4.2330 -3.5882 -7.9822 23 1 3.3816 -2.4715 -8.4651 24 1 5.3952 -3.7530 -8.8917 25 1 3.4388 -4.8428 -7.9607 26 6 2.0698 -0.7742 -1.2227 27 1 -0.3634 0.5032 0.8961 28 1 -0.3633 0.5245 -0.8837 29 1 -0.3634 -1.0275 -0.0123 30 1 2.5939 1.6852 -0.7325 31 1 3.3518 3.6007 1.0048 32 1 1.8963 4.1401 0.1336 33 1 0.6870 4.3577 2.2870 34 1 2.1422 3.8185 3.1589 35 1 2.0181 6.2711 1.3486 36 1 1.3172 -1.4682 1.6031 37 1 2.3761 -0.0806 2.0121 38 1 4.1578 -0.8809 0.5990 39 1 3.5082 -2.4149 1.2601 40 1 4.6517 -1.3705 -1.6036 41 1 4.5194 -3.0933 -1.1758 42 1 5.3281 -2.6687 -3.7855 43 1 6.7669 -3.2621 -6.7381 44 1 2.7221 -0.1290 -1.8114 45 1 1.2418 -1.1258 -1.8383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716843411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:51 Heat of formation + Delta-G solvation = -200.245462 kcal Electronic energy + Delta-G solvation = -28883.304910 eV Core-core repulsion = 24377.082924 eV Total energy + Delta-G solvation = -4506.221986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.86973 -47.90139 -41.59859 -40.32899 -39.03478 -36.08698 -35.53059 -34.76892 -33.29720 -32.56039 -30.76442 -28.76321 -27.98158 -26.98694 -25.48674 -23.60153 -22.59933 -21.68403 -20.90412 -20.51673 -19.84018 -18.66320 -18.45484 -17.78520 -17.74748 -17.45646 -16.80814 -16.67403 -16.51020 -16.41590 -15.91023 -15.59174 -15.31265 -14.88660 -14.86126 -14.70221 -14.42211 -14.25812 -14.13811 -13.80155 -13.64642 -13.52127 -13.44629 -13.28168 -13.10346 -12.95985 -12.85155 -12.42144 -12.40374 -12.35247 -12.18932 -12.11707 -12.06326 -11.80781 -11.76894 -11.46909 -10.72008 -10.28997 -10.08783 -10.00178 -9.35584 -8.45827 -5.94144 1.39960 1.42537 1.52842 1.65272 2.04302 2.06266 2.29047 2.83010 2.99478 3.21188 3.32431 3.37363 3.44561 3.53226 3.68430 3.74981 3.89123 3.97035 4.26135 4.26441 4.27617 4.33744 4.39340 4.41593 4.51925 4.57994 4.62161 4.73549 4.81347 4.87912 4.89415 4.97948 5.05610 5.07950 5.15408 5.26213 5.41851 5.51964 5.83803 5.94329 6.07646 6.55808 6.61455 7.13769 7.25783 7.57017 8.12489 8.71270 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.002207 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.089067 B =12684.676077 C =13449.180513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.168 3.832 3 N -0.714 5.714 4 C 0.515 3.485 5 O -0.569 6.569 6 C -0.136 4.136 7 C -0.151 4.151 8 C 0.259 3.741 9 F -0.222 7.222 10 F -0.219 7.219 11 C -0.113 4.113 12 C 0.036 3.964 13 N -0.511 5.511 14 C 0.049 3.951 15 C 0.440 3.560 16 O -0.614 6.614 17 N -0.573 5.573 18 C -0.331 4.331 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.274 1.274 26 C 0.056 3.944 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.411 0.589 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.043 0.957 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 16.365 14.585 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.081 3.919 3 N -0.367 5.367 4 C 0.303 3.697 5 O -0.448 6.448 6 C -0.175 4.175 7 C -0.189 4.189 8 C 0.206 3.794 9 F -0.204 7.204 10 F -0.201 7.201 11 C -0.151 4.151 12 C -0.091 4.091 13 N -0.236 5.236 14 C -0.083 4.083 15 C 0.227 3.773 16 O -0.500 6.500 17 N -0.210 5.210 18 C -0.460 4.460 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.073 4.073 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.247 0.753 31 H 0.134 0.866 32 H 0.150 0.850 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.169 0.831 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.128 0.872 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.756 15.546 14.989 22.112 hybrid contribution 1.164 0.344 -1.170 1.686 sum -3.593 15.890 13.819 21.363 Atomic orbital electron populations 1.22043 0.93473 1.02469 1.02445 1.21135 0.94488 0.81447 0.94853 1.46222 1.53623 1.11695 1.25125 1.20974 0.79502 0.88135 0.81085 1.90688 1.39389 1.78000 1.36735 1.21615 1.04228 0.91261 1.00419 1.22326 1.03913 0.92902 0.99796 1.22325 0.73895 0.93789 0.89376 1.92961 1.86100 1.81360 1.59946 1.92969 1.32596 1.97416 1.97071 1.22736 0.97444 0.98408 0.96555 1.23379 0.96862 0.99809 0.89082 1.64529 1.20004 1.36736 1.02282 1.21990 0.92976 1.02980 0.90310 1.20703 0.86498 0.82817 0.87268 1.90491 1.17624 1.57344 1.84538 1.41922 1.08825 1.62573 1.07719 1.19600 0.93890 1.46913 0.85615 0.90274 1.26008 0.95037 0.96716 1.03477 1.69661 1.01370 1.49772 1.35314 0.85020 0.77751 0.78846 0.76935 1.19599 1.19628 1.19887 1.23050 0.98649 0.90509 0.95070 0.91194 0.92504 0.91897 0.75256 0.86554 0.84986 0.88022 0.90620 0.83110 0.90430 0.90158 0.92549 0.88734 0.91050 0.87178 0.77037 0.91335 0.93828 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.17 71.98 0.59 -3.04 16 2 C 0.17 4.01 0.96 4.64 0.00 4.01 16 3 N -0.71 -12.86 5.15 -418.24 -2.16 -15.01 16 4 C 0.51 9.09 7.03 87.66 0.62 9.71 16 5 O -0.57 -14.13 12.85 -3.01 -0.04 -14.16 16 6 C -0.14 -1.26 5.62 29.85 0.17 -1.09 16 7 C -0.15 -1.72 4.73 30.60 0.14 -1.58 16 8 C 0.26 2.61 5.29 71.98 0.38 2.99 16 9 F -0.22 -3.55 17.34 44.97 0.78 -2.77 16 10 F -0.22 -3.21 17.02 44.97 0.77 -2.44 16 11 C -0.11 -2.65 5.80 31.80 0.18 -2.46 16 12 C 0.04 0.84 6.56 86.65 0.57 1.40 16 13 N -0.51 -15.90 5.12 -886.57 -4.54 -20.44 16 14 C 0.05 1.61 5.30 85.56 0.45 2.06 16 15 C 0.44 20.09 7.39 87.66 0.65 20.74 16 16 O -0.61 -32.58 14.10 -3.06 -0.04 -32.62 16 17 N -0.57 -28.40 5.29 -306.98 -1.62 -30.02 16 18 C -0.33 -18.25 9.68 84.04 0.81 -17.44 16 19 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 21 N -0.92 -48.57 13.05 21.66 0.28 -48.29 16 22 Si 0.99 42.00 29.55 68.60 2.03 44.03 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 C 0.06 1.68 4.86 86.61 0.42 2.10 16 27 H 0.07 1.80 6.31 -2.38 -0.02 1.79 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.41 5.74 8.11 -92.71 -0.75 4.99 16 31 H 0.12 0.84 7.94 -2.39 -0.02 0.82 16 32 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.10 1.21 8.10 -2.39 -0.02 1.19 16 34 H 0.08 1.18 8.10 -2.39 -0.02 1.16 16 35 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.08 1.91 7.86 -2.39 -0.02 1.89 16 37 H 0.08 1.89 6.57 -2.39 -0.02 1.87 16 38 H 0.06 1.17 7.95 -2.39 -0.02 1.15 16 39 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.07 2.03 8.00 -2.38 -0.02 2.01 16 41 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.40 18.65 7.90 -92.71 -0.73 17.91 16 43 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 44 H 0.04 1.29 7.05 -2.38 -0.02 1.27 16 45 H 0.07 2.78 6.59 -2.38 -0.02 2.77 16 Total: -1.00 -71.17 372.45 0.47 -70.70 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.45 Total: 33.81 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 5.46 Total: 17.22 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -8.03 Total: -113.76 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -0.08 Total: -46.78 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 1.54 Total: -5.21 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -71.17 0.47 -70.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716843411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.544 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds