Wall clock time and date at job start Tue Mar 31 2020 17:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46509 * 110.28561 * 2 1 4 4 C 1.34780 * 119.99944 * 299.32696 * 3 2 1 5 5 O 1.21277 * 120.00018 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99529 * 179.97438 * 4 3 2 7 7 C 1.53009 * 109.46953 * 180.02562 * 6 4 3 8 8 C 1.52995 * 109.47383 * 180.02562 * 7 6 4 9 9 F 1.39901 * 109.47050 * 64.99925 * 8 7 6 10 10 F 1.39896 * 109.47416 * 185.00381 * 8 7 6 11 11 C 1.54262 * 110.32513 * 237.87458 * 2 1 3 12 12 C 1.54377 * 105.05927 * 240.99970 * 11 2 1 13 13 N 1.48552 * 104.59445 * 336.14521 * 12 11 2 14 14 C 1.46902 * 110.99920 * 159.04050 * 13 12 11 15 15 C 1.50702 * 109.47027 * 69.87237 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00042 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 89.99599 * 22 20 18 24 24 H 1.48494 * 109.47201 * 209.99761 * 22 20 18 25 25 H 1.48507 * 109.46904 * 329.99936 * 22 20 18 26 26 C 1.48563 * 104.22423 * 39.48587 * 13 12 11 27 27 H 1.09006 * 109.47185 * 180.67440 * 1 2 3 28 28 H 1.09005 * 109.47366 * 300.67027 * 1 2 3 29 29 H 1.09002 * 109.47760 * 60.67469 * 1 2 3 30 30 H 0.96995 * 119.99860 * 119.32821 * 3 2 1 31 31 H 1.08999 * 109.47389 * 299.99610 * 6 4 3 32 32 H 1.09004 * 109.47503 * 60.00564 * 6 4 3 33 33 H 1.08999 * 109.46752 * 299.99998 * 7 6 4 34 34 H 1.09004 * 109.46556 * 59.99983 * 7 6 4 35 35 H 1.09008 * 109.46879 * 305.00513 * 8 7 6 36 36 H 1.09002 * 110.32250 * 122.10021 * 11 2 1 37 37 H 1.08998 * 110.40670 * 359.94081 * 11 2 1 38 38 H 1.09000 * 110.40771 * 217.36703 * 12 11 2 39 39 H 1.08995 * 110.51009 * 94.98023 * 12 11 2 40 40 H 1.09004 * 109.47131 * 309.87481 * 14 13 12 41 41 H 1.08994 * 109.47471 * 189.87230 * 14 13 12 42 42 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 43 43 H 0.97005 * 120.00014 * 180.02562 * 21 20 18 44 44 H 1.08995 * 110.40809 * 79.29078 * 26 13 12 45 45 H 1.08997 * 110.41077 * 201.73969 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0379 1.3742 0.0000 4 6 1.7353 2.2045 -1.0176 5 8 1.0421 1.8142 -1.9331 6 6 2.2573 3.6181 -1.0173 7 6 1.7710 4.3417 -2.2747 8 6 2.3014 5.7768 -2.2747 9 9 3.6968 5.7581 -2.3747 10 9 1.7651 6.4722 -3.3636 11 6 2.0657 -0.7692 -1.2251 12 6 2.8828 -1.9400 -0.6377 13 7 3.2720 -1.4805 0.7203 14 6 3.6119 -2.6192 1.5840 15 6 4.9067 -3.2339 1.1184 16 8 5.4894 -2.7689 0.1616 17 7 5.4205 -4.2966 1.7690 18 6 6.6013 -4.8523 1.3490 19 1 7.1200 -4.4382 0.4970 20 6 7.1307 -5.9482 2.0193 21 7 8.2628 -6.4805 1.6170 22 14 6.2331 -6.6648 3.4925 23 1 5.2888 -7.7152 3.0340 24 1 7.2182 -7.2602 4.4307 25 1 5.4787 -5.5887 4.1840 26 6 2.0683 -0.7706 1.2245 27 1 -0.3634 -1.0276 0.0121 28 1 -0.3634 0.5242 0.8839 29 1 -0.3635 0.5033 -0.8960 30 1 2.5919 1.6864 0.7323 31 1 1.8911 4.1405 -0.1335 32 1 3.3471 3.6031 -1.0050 33 1 2.1368 3.8195 -3.1587 34 1 0.6811 4.3568 -2.2865 35 1 2.0102 6.2718 -1.3482 36 1 2.7066 -0.1244 -1.8264 37 1 1.2398 -1.1484 -1.8268 38 1 3.7689 -2.1271 -1.2442 39 1 2.2701 -2.8391 -0.5738 40 1 2.8174 -3.3637 1.5332 41 1 3.7222 -2.2751 2.6123 42 1 4.9548 -4.6683 2.5344 43 1 8.6322 -7.2458 2.0847 44 1 1.3264 -1.4857 1.5799 45 1 2.3412 -0.0773 2.0201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716843412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:56 Heat of formation + Delta-G solvation = -169.041140 kcal Electronic energy + Delta-G solvation = -28716.549774 eV Core-core repulsion = 24211.680909 eV Total energy + Delta-G solvation = -4504.868865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.28381 -47.29679 -40.63855 -39.00038 -37.80217 -34.81202 -34.13500 -33.86887 -31.83192 -31.54951 -29.67874 -27.80600 -27.38738 -25.41132 -23.81101 -22.91861 -21.51040 -20.90461 -19.71372 -19.29492 -18.27874 -18.02764 -17.83466 -17.16874 -16.58976 -16.20019 -15.93708 -15.79526 -15.35871 -14.81478 -14.67366 -14.39943 -14.19570 -14.02212 -13.76636 -13.61009 -13.45345 -13.23311 -13.12127 -12.86506 -12.65069 -12.58672 -12.41314 -12.30735 -12.06044 -11.93622 -11.70649 -11.58896 -11.27447 -11.24246 -11.08067 -11.05439 -10.73501 -10.60995 -9.99255 -9.89229 -9.57319 -9.23194 -8.66304 -8.21598 -8.14416 -6.32237 -3.83757 2.42134 2.82408 3.00313 3.04651 3.13242 3.51114 3.71755 3.85542 3.91113 4.04560 4.08656 4.18435 4.27141 4.58295 4.65282 4.69123 4.80911 4.87807 4.94413 5.04963 5.19135 5.24779 5.28834 5.39970 5.41270 5.47326 5.56150 5.57901 5.60059 5.67858 5.68747 5.88421 5.92294 6.04286 6.17712 6.38093 6.44054 6.96300 7.01778 7.33168 7.56780 8.03280 8.13021 8.58808 8.94107 9.41025 9.81980 10.80893 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.021069 B = 0.002101 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.660395 B =13321.089188 C =14117.379430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 N -0.712 5.712 4 C 0.518 3.482 5 O -0.537 6.537 6 C -0.144 4.144 7 C -0.155 4.155 8 C 0.261 3.739 9 F -0.205 7.205 10 F -0.206 7.206 11 C -0.118 4.118 12 C 0.035 3.965 13 N -0.483 5.483 14 C 0.031 3.969 15 C 0.453 3.547 16 O -0.558 6.558 17 N -0.592 5.592 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.028 3.972 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.403 0.597 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.040 0.960 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.058 0.942 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.531 20.066 0.991 27.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.087 3.913 3 N -0.363 5.363 4 C 0.304 3.696 5 O -0.414 6.414 6 C -0.184 4.184 7 C -0.194 4.194 8 C 0.208 3.792 9 F -0.187 7.187 10 F -0.188 7.188 11 C -0.157 4.157 12 C -0.093 4.093 13 N -0.207 5.207 14 C -0.101 4.101 15 C 0.239 3.761 16 O -0.440 6.440 17 N -0.232 5.232 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.101 4.101 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.238 0.762 31 H 0.117 0.883 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.947 20.273 -0.326 27.078 hybrid contribution -0.817 -1.164 1.711 2.225 sum -18.763 19.109 1.385 26.817 Atomic orbital electron populations 1.22191 0.93599 1.02512 1.03201 1.21007 0.93490 0.81101 0.95731 1.46109 1.53399 1.12106 1.24727 1.20336 0.80246 0.87101 0.81947 1.90696 1.38100 1.77257 1.35340 1.21590 1.03804 0.93709 0.99283 1.22399 1.03905 0.92617 1.00451 1.21947 0.74906 0.93909 0.88461 1.93007 1.31318 1.97369 1.96965 1.92994 1.85868 1.81078 1.58824 1.22673 0.99545 0.96923 0.96563 1.23236 0.99819 0.95345 0.90906 1.65174 1.30698 1.22758 1.02039 1.22105 0.97199 0.92765 0.98019 1.19572 0.87398 0.82805 0.86338 1.90555 1.61993 1.62594 1.28811 1.42205 1.22926 1.28820 1.29214 1.19418 0.97255 1.11341 1.15232 0.86288 1.25040 0.96188 0.96801 0.98204 1.69622 1.18398 1.23401 1.40720 0.86671 0.80019 0.79816 0.82855 1.19684 1.20177 1.19529 1.23435 0.92513 0.97862 0.96279 0.91715 0.92637 0.90244 0.76223 0.88319 0.87702 0.88490 0.87972 0.87240 0.90537 0.90724 0.88028 0.94205 0.93027 0.89141 0.79773 0.91620 0.92399 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.17 37.15 0.30 -1.16 16 2 C 0.17 1.81 1.01 -130.44 -0.13 1.68 16 3 N -0.71 -6.38 5.10 -46.33 -0.24 -6.62 16 4 C 0.52 4.91 6.99 -10.99 -0.08 4.84 16 5 O -0.54 -6.87 13.27 5.56 0.07 -6.79 16 6 C -0.14 -0.86 5.62 -27.88 -0.16 -1.02 16 7 C -0.16 -1.04 4.73 -26.73 -0.13 -1.17 16 8 C 0.26 1.64 5.29 37.15 0.20 1.83 16 9 F -0.21 -1.80 17.02 2.25 0.04 -1.76 16 10 F -0.21 -1.80 17.34 2.25 0.04 -1.77 16 11 C -0.12 -1.53 5.48 -25.35 -0.14 -1.67 16 12 C 0.03 0.53 5.80 -2.19 -0.01 0.52 16 13 N -0.48 -7.24 5.06 -231.42 -1.17 -8.41 16 14 C 0.03 0.50 5.30 -4.97 -0.03 0.47 16 15 C 0.45 10.08 7.58 -10.98 -0.08 10.00 16 16 O -0.56 -14.71 14.42 5.55 0.08 -14.63 16 17 N -0.59 -13.88 5.09 -10.96 -0.06 -13.94 16 18 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 19 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 20 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 21 N -0.88 -25.64 13.96 55.50 0.77 -24.87 16 22 Si 0.88 19.14 27.74 -169.99 -4.71 14.43 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 26 C 0.03 0.29 5.69 -2.18 -0.01 0.28 16 27 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.87 6.31 -51.93 -0.33 0.55 16 30 H 0.40 2.80 8.26 -40.82 -0.34 2.47 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.61 7.94 -51.93 -0.41 0.20 16 33 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.11 0.31 8.14 -51.92 -0.42 -0.12 16 36 H 0.08 1.12 7.31 -51.93 -0.38 0.74 16 37 H 0.07 0.93 7.71 -51.93 -0.40 0.53 16 38 H 0.10 1.91 6.91 -51.93 -0.36 1.55 16 39 H 0.04 0.58 7.82 -51.93 -0.41 0.17 16 40 H 0.05 0.72 7.88 -51.93 -0.41 0.31 16 41 H 0.09 1.24 8.13 -51.93 -0.42 0.82 16 42 H 0.37 7.58 5.76 -40.82 -0.24 7.34 16 43 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 44 H 0.06 0.55 7.71 -51.93 -0.40 0.15 16 45 H 0.09 0.76 7.75 -51.93 -0.40 0.36 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -34.91 370.97 -6.67 -41.58 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.58 Total: 10.23 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.51 Total: 6.94 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.69 Total: -53.83 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.15 Total: -21.42 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.08 Total: -3.53 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.91 -6.67 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716843412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.456 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds